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LOCUS XM_022361503 6802 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X22, mRNA. ACCESSION XM_022361503 VERSION XM_022361503.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022361503.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6802 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6802 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 42 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6653 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X22" /protein_id="XP_022217195.2" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL EDIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFII TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDD GISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE KGNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNI RRGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENG AIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRN QSVGATNGGTTCLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKD VMVLNDIIEQAAGRHSRASDRGEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLK LQEWISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIE ATMKLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKS WPTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPR WNFTDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLAL LLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQ PSGERTNQISWIWSEEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIH GDMKNNKPKKSKYLNNATDDDTASINSYGSHKNRPFKDESHKGSAETMEGEEKRDASK EDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDEYPADCCPDSYYKKFPILAGDDD SPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLPQRPILQDILYYM DRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGIQAFK TMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAG KYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQVATFKGWI QIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKA GGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDIVIMLF IGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYFIEPWNLFD VVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMS LPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQMSTSA GWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMYIAVIL ENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKP NKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGNPIEETGEIGEIAARPDTEGYE PVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAGGGGGAALML GVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAAAAVAPQPAGDGGEGPDGGATAD PHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVESDGFVTKNGHKVVIHSRSPSIT SRTADV" misc_feature 690..1544 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1899..2456 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2661..3296 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3372..4070 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4080..4895 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4863..5021 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4908..4919 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5043..5795 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5826..5969 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gaggtgccgc aatatggtcg caagaaaaaa caaaaagaaa 421 tccgatatga tgacgaggac gaggatgaag gtccacaacc ggatcctaca cttgaacagg 481 gtgtgccaat acctgttcga ctgcagggca gcttccctcc ggaattggcc tccactcccc 541 tcgaggatat cgatcccttc tacagcaata tactgacatt cgtagttgta agcaaaggaa 601 aagatatttt tcgcttttct gcatcaaaag caatgtggct gctcgatcca ttcaatccga 661 tacgtcgtgt ggccatttac attttagtgc atccactatt ttcgttattc atcattacca 721 caattctcgt caactgcatc ctgatgataa tgccgacaac gcccacagtt gagtccactg 781 aggtgatatt caccggaatc tacacatttg aatcagctgt taaagtgatg gcacgaggtt 841 tcattttatg cccgtttacg tatcttagag atgcatggaa ttggctggac ttcgtagtaa 901 tagctttagc ttatgtgacc atgggtatag atttaggtaa tcttgcagcc ttgcgaacgt 961 ttagggtgct gcgagcgctt aaaaccgtag ccattgtgcc aggcttgaag accattgtcg 1021 gtgcggtcat cgaatctgta aagaatctgc gcgatgtgat aattttgaca atgttctccc 1081 tgtcggtgtt cgcgctgatg gggctgcaaa tctacatggg cgtgctaacg cagaagtgca 1141 tcaagaagtt cccgctggac ggctcctggg gcaacctgac cgacgagaac tgggcctatc 1201 acaatagcaa caactctaat tggtattcgg aagacgacgg tatatccttt ccgttgtgcg 1261 gtaatatctc tggagcgggg caatgtgaag acgattacgt gtgtctgcag gggttcgggc 1321 cgaacccgaa ctatggctac accagtttcg attcgttcgg ttgggcgttt ctgtccgcct 1381 tccggctgat gacgcaggac ttctgggagg atctgtatca gctggtgttg cgtgccgcag 1441 gaccctggca catgctgttc tttatagtca tcatcttcct aggttcattc tatcttgtga 1501 atttgatttt ggccattgtt gccatgtcgt atgacgaatt gcaaaagaag gccgaagaag 1561 aagaggctgc cgaagaggag gcgatacgtg aagccgagga agctgccgcc gccaaagcag 1621 ccaagctgga ggagcgcgcc aatgcgcagg cccaggccgc cgccgatgca gctgccgccg 1681 aagaggcggc tcttcatccg gagatggcca agagtccgac gtattcgtgc atcagctatg 1741 agctatttgt gggcggcgag aaaggcaacg atgacaacaa caaggagaag atgtccatac 1801 gcagcgttga ggtggagtcg gagtcggtga gcgttataca aagacaacca gcacctacca 1861 cagcacacca agctaccaaa gttcgtaaag tgagcacgac atccttatcc ttacctggtt 1921 caccgtttaa catacgcagg ggatcacgta gttctcacaa gtacacgatc cggaatggac 1981 gtggacgctt tggtataccc ggcagcgatc gcaagccgtt ggtattgtca acatatcagg 2041 atgctcagca gcacttgccc tatgccgatg attcgaacgc tgttacgccc atgtccgagg 2101 agaacggtgc cattatagtg cccgtttatt atggaaatct aggctccagg cattcatcgt 2161 atacttcgca tcagtccaga atatcgtata cctcacatgg cgatctattg ggcggcatgg 2221 ccgtcatggg cgtcagcaca atgaccaagg agagcaaatt gcgaaatcgc aactcacgca 2281 atcaatcagt gggcgccacc aatggcggca ccacctgcct ggaccccaat cacaaggtcg 2341 agcatcgcga cttcgaaatc ggtctggagt gcacggacga agctggcaag attaaacatc 2401 atgacaatcc ttttatcgag cccgtccaga cacaaacggt agtcgacatg aaagatgtga 2461 tggtactgaa tgacattatc gaacaggccg ctggtcggca cagtcgggct agtgatcgcg 2521 gtgaggacga tgatgaggat gggccgacat taaaagacaa ggccctcgaa gcgctaatga 2581 aaggcatcga agtgttttgt gtgtgggact gttgctgggt ttggttgaaa ttgcaggagt 2641 ggatatcgct gatcgtcttc gatccctttg tcgagctctt catcacgctg tgcattgtgg 2701 tcaacacgat gttcatggcc atggaccatc acgacatgaa caaggagatg gaacgcatcc 2761 ttaagtgcgg aaattatttc ttcacggcaa cattcgccat tgaggcaacc atgaaactgt 2821 gcgccatgag ccccaaatac tatttccagg agggctggaa catctttgac ttcatcattg 2881 tggcactctc attgctggag ctgggcctcg agggcgttca gggcctctcc gtcttgcgtt 2941 cgtttcgttt gctgcgtgta ttcaaattgg ccaagtcctg gccaacactt aatttactca 3001 tttcgattat gggacgcacc atgggcgctt tgggtaatct gacatttgta ctttgcatta 3061 tcatcttcat ctttgcggtg atgggaatgc aactgttcgg aaagaattat catgataaca 3121 aggatcgctt cccggacggt gacctgcccc gctggaactt caccgacttc atgcacagct 3181 tcatgatcgt gtttcgggtg ctatgcggcg agtggatcga gtccatgtgg gactgtatgc 3241 acgtgggcga tgtatcgtgc attccattct tcttggccac cgttgtcatc ggcaatttag 3301 tggttcttaa ccttttctta gccctgcttt tgtcaaattt tggttcatct agcttatcag 3361 cgccgacagc cgataacgat accaataaaa tagccgaggc cttcaatcga attgggcgat 3421 ttaaaagttg ggttaagcgt aatattgctg attgtttcaa gttaatacgt aacaaattga 3481 caaatcaaat aagtgatcaa ccatcaggtg agaggaccaa ccagatcagt tggatttgga 3541 gcgaagagca cggcgacaac gagctggagc tgggccacga cgagatactc gccgacgggc 3601 tcatcaagaa gggcatcaag gaggcgacac agctggaggt ggccatcggt gatggcatgg 3661 agttcacgat acacggcgac atgaagaaca acaagccgaa gaaatccaaa tatctaaata 3721 acgcaacgga cgacgacact gccagcatta actcatatgg tagccataag aatcgaccat 3781 tcaaggatga gagccacaag ggcagcgccg agacgatgga gggcgaggag aagcgggacg 3841 ccagcaagga ggatttaggt atcgatgagg agctcgacga ggagggcgaa ttggaggagg 3901 gcccgctcga cggcgatatc atcatacatg ccaacgatga ggatatactc gatgaatatc 3961 cagctgattg ctgccccgat tcgtactata agaaatttcc gatcttagcc ggtgatgatg 4021 actcgccgtt ctggcaagga tggggcaatt tacgactgaa aacttttcaa ttaattgaaa 4081 ataaatattt tgaaacagct gttatcacta tgattttaat gagtagctta gctttggcat 4141 tagaagatgt acatctgcca caaagaccca tactgcagga tattttatac tatatggaca 4201 gaatatttac ggttatattc ttcttggaaa tgttaatcaa gtggctggcg ctcggcttca 4261 aagtgtactt cacgaacgcg tggtgctggc tcgatttcgt cattgtcatg gtatcgctta 4321 tcaacttcgt tgcttcactt gttggagctg gtggtattca agccttcaag actatgcgaa 4381 cgttaagagc actgagacca ctacgtgcca tgtcccgtat gcagggcatg agggtcgtcg 4441 ttaatgcgct ggtacaagct ataccgtcca tcttcaatgt gctattggtg tgtctaatat 4501 tttggctaat ttttgccata atgggtgtac agctttttgc tggaaaatat tttaagtgcg 4561 aggacatgaa tggcacgaag ctcagccacg agatcatacc aaatcgcaat gcctgcgaaa 4621 gcgagaacta cacgtgggtg aattcagcaa tgaatttcga tcatgtaggt aacgcgtatc 4681 tgtgcctttt ccaagtggcc accttcaaag gctggataca aatcatgaac gatgctatcg 4741 attcacgaga ggtggacaag cagccaattc gtgaaacgaa catctacatg tatttatatt 4801 tcgtattctt catcatattt ggatcatttt tcacactcaa tctgttcatt ggtgttatca 4861 ttgataattt taatgagcaa aagaaaaaag caggtggatc attagaaatg ttcatgacag 4921 aagatcagaa aaagtactat aatgctatga aaaagatggg ctctaaaaaa ccattaaaag 4981 ccattccaag accaaggtgg cgtccacaag caatagtctt tgaaatagta accgataaga 5041 aattcgatat agtcataatg ttattcattg gtctgaacat gttcaccatg acactcgatc 5101 gttacgatgc gtcggacacg tacaacgcgg tccttgacta tctcaatgcg atattcgtag 5161 ttattttcag ttccgaatgt ctattaaaaa tattcgcttt acgatatcac tattttattg 5221 agccatggaa tttatttgat gtagtagttg tcattttatc catcttaggt ctcgtactta 5281 gcgatattat cgagaaatac ttcgtatcgc cgacactgct ccgagtggtg cgcgtggcca 5341 aagtgggtcg cgtactgcgt ctggtgaagg gcgccaaggg tatacgaacg ctgctgttcg 5401 ccctggccat gtcgctgccg gcgctgttca acatctgcct gctgctgttc ctggtcatgt 5461 tcatcttcgc gatattcggc atgtcgttct tcatgcatgt gaaggagaag agcggcatca 5521 acgacgtcta caacttcaag acgttcggac agagcatgat cctgctcttt cagatgtcta 5581 cctcagccgg ttgggatggt gtactcgacg ccattatcaa tgaggaagca tgcgatccac 5641 ccgacaacga caaaggctat ccgggcaatt gtggttcagc gaccgttgga ataacgtttc 5701 tcctctcata cctagttata agctttttga tagttattaa tatgtacatt gctgtcattc 5761 tcgagaacta tagtcaggcc accgaggatg tgcaggaggg tctcaccgac gacgattacg 5821 atatgtacta tgagatctgg caacagttcg atccggaggg cacccagtac atacgatacg 5881 accagctgtc cgagttcctc gacgtgctgg agcccccgct ccagattcac aagcccaaca 5941 agtacaaaat catatcgatg gacataccca tctgtcgcgg tgacctcatg tactgtgtgg 6001 acatactgga cgcactgacc aaagactttt tcgcgcgcaa aggcaatccc attgaggaga 6061 cgggcgagat tggtgagatt gccgccaggc cggacaccga gggctacgag cccgtctcct 6121 ccaccctctg gcgacagcgg gaggagtact gtgcccgcct cattcaacat gcctggcgca 6181 agcataaaac gcgcgccgag ggcggtggtg caccgtccga cgcggaaggc gacggccccg 6241 aagatggtga tgcgggtggc ggtggcgggg cggcgctgat gctgggtgtt ctggatgttc 6301 cagatgctgc tggcgatgca gcaaccactg gctcccatga cggggcaacg gcactcgatc 6361 ccgagaccga tccatcggga gtaccggcgg cagcggcggt ggccccacag ccagccggtg 6421 acggcggcga gggaccggat ggaggagcaa cagccgatcc gcacgagagc aatgtaaata 6481 gtccgacgat ggacggcgcg acggcgggca gcccgggcgc agggagcgct ggcagcactg 6541 gccgacagac ggccgttctc gtggagagcg atgggtttgt gaccaagaac gggcacaagg 6601 ttgtaataca ctcgcgttcg ccgagcataa cgtcgcgcac ggcggatgtc tgagccaggc 6661 ctcgcccccc cctccaagat gcacgcgagt attaggtgca ggtgcagatg cagtgcagtg 6721 gtggtgccac aacaacaaca acaacaacag caggtgccac tggtagctgc aattgcaact 6781 gcaacagcag caacaggaag aa