Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_022361502 6814 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X20, mRNA. ACCESSION XM_022361502 VERSION XM_022361502.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022361502.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6814 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6814 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 45 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6665 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X20" /protein_id="XP_022217194.2" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL EDIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFII TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDD GISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE KGNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTYTIRNGRGRFGI PGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSH QSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTCLDPNHKVEH RDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDR GEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEWISLIVFDPFVELFITLC IVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMKLCAMSPKYYFQEGWNIF DFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGRTMGALGNL TFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFTDFMHSFMIVFRVLCGEW IESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPTADNDTNK IAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSGERTNQISWIWSEEHGDNE LELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNATMIG NSINHQDNRLEHELNHRGLSLQDDDTASINSYGSHKNRPFKDESHKGSAETMEGEEKR DASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDEYPADCCPDSYYKKFPILA GDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLPQRPILQDI LYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGGI QAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQ LFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQVATF KGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQ KKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDIV IMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYFIEPW NLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFA LAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQM STSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMYI AVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPLQ IHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGNPIEETGEIGEIAARPDT EGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAGGGGGA ALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAAAAVAPQPAGDGGEGPDGG ATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVESDGFVTKNGHKVVIHSRS PSITSRTADV" misc_feature 690..1544 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1893..2393 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2598..3233 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3309..4082 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4092..4907 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4875..5033 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4920..4931 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5055..5807 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5838..5981 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gaggtgccgc aatatggtcg caagaaaaaa caaaaagaaa 421 tccgatatga tgacgaggac gaggatgaag gtccacaacc ggatcctaca cttgaacagg 481 gtgtgccaat acctgttcga ctgcagggca gcttccctcc ggaattggcc tccactcccc 541 tcgaggatat cgatcccttc tacagcaata tactgacatt cgtagttgta agcaaaggaa 601 aagatatttt tcgcttttct gcatcaaaag caatgtggct gctcgatcca ttcaatccga 661 tacgtcgtgt ggccatttac attttagtgc atccactatt ttcgttattc atcattacca 721 caattctcgt caactgcatc ctgatgataa tgccgacaac gcccacagtt gagtccactg 781 aggtgatatt caccggaatc tacacatttg aatcagctgt taaagtgatg gcacgaggtt 841 tcattttatg cccgtttacg tatcttagag atgcatggaa ttggctggac ttcgtagtaa 901 tagctttagc ttatgtgacc atgggtatag atttaggtaa tcttgcagcc ttgcgaacgt 961 ttagggtgct gcgagcgctt aaaaccgtag ccattgtgcc aggcttgaag accattgtcg 1021 gtgcggtcat cgaatctgta aagaatctgc gcgatgtgat aattttgaca atgttctccc 1081 tgtcggtgtt cgcgctgatg gggctgcaaa tctacatggg cgtgctaacg cagaagtgca 1141 tcaagaagtt cccgctggac ggctcctggg gcaacctgac cgacgagaac tgggcctatc 1201 acaatagcaa caactctaat tggtattcgg aagacgacgg tatatccttt ccgttgtgcg 1261 gtaatatctc tggagcgggg caatgtgaag acgattacgt gtgtctgcag gggttcgggc 1321 cgaacccgaa ctatggctac accagtttcg attcgttcgg ttgggcgttt ctgtccgcct 1381 tccggctgat gacgcaggac ttctgggagg atctgtatca gctggtgttg cgtgccgcag 1441 gaccctggca catgctgttc tttatagtca tcatcttcct aggttcattc tatcttgtga 1501 atttgatttt ggccattgtt gccatgtcgt atgacgaatt gcaaaagaag gccgaagaag 1561 aagaggctgc cgaagaggag gcgatacgtg aagccgagga agctgccgcc gccaaagcag 1621 ccaagctgga ggagcgcgcc aatgcgcagg cccaggccgc cgccgatgca gctgccgccg 1681 aagaggcggc tcttcatccg gagatggcca agagtccgac gtattcgtgc atcagctatg 1741 agctatttgt gggcggcgag aaaggcaacg atgacaacaa caaggagaag atgtccatac 1801 gcagcgttga ggtggagtcg gagtcggtga gcgttataca aagacaacca gcacctacca 1861 cagcacacca agctaccaaa gttcgtaaag tgagcacgta cacgatccgg aatggacgtg 1921 gacgctttgg tatacccggc agcgatcgca agccgttggt attgtcaaca tatcaggatg 1981 ctcagcagca cttgccctat gccgatgatt cgaacgctgt tacgcccatg tccgaggaga 2041 acggtgccat tatagtgccc gtttattatg gaaatctagg ctccaggcat tcatcgtata 2101 cttcgcatca gtccagaata tcgtatacct cacatggcga tctattgggc ggcatggccg 2161 tcatgggcgt cagcacaatg accaaggaga gcaaattgcg aaatcgcaac tcacgcaatc 2221 aatcagtggg cgccaccaat ggcggcacca cctgcctgga ccccaatcac aaggtcgagc 2281 atcgcgactt cgaaatcggt ctggagtgca cggacgaagc tggcaagatt aaacatcatg 2341 acaatccttt tatcgagccc gtccagacac aaacggtagt cgacatgaaa gatgtgatgg 2401 tactgaatga cattatcgaa caggccgctg gtcggcacag tcgggctagt gatcgcggtg 2461 aggacgatga tgaggatggg ccgacattaa aagacaaggc cctcgaagcg ctaatgaaag 2521 gcatcgaagt gttttgtgtg tgggactgtt gctgggtttg gttgaaattg caggagtgga 2581 tatcgctgat cgtcttcgat ccctttgtcg agctcttcat cacgctgtgc attgtggtca 2641 acacgatgtt catggccatg gaccatcacg acatgaacaa ggagatggaa cgcatcctta 2701 agtgcggaaa ttatttcttc acggcaacat tcgccattga ggcaaccatg aaactgtgcg 2761 ccatgagccc caaatactat ttccaggagg gctggaacat ctttgacttc atcattgtgg 2821 cactctcatt gctggagctg ggcctcgagg gcgttcaggg cctctccgtc ttgcgttcgt 2881 ttcgtttgct gcgtgtattc aaattggcca agtcctggcc aacacttaat ttactcattt 2941 cgattatggg acgcaccatg ggcgctttgg gtaatctgac atttgtactt tgcattatca 3001 tcttcatctt tgcggtgatg ggaatgcaac tgttcggaaa gaattatcat gataacaagg 3061 atcgcttccc ggacggtgac ctgccccgct ggaacttcac cgacttcatg cacagcttca 3121 tgatcgtgtt tcgggtgcta tgcggcgagt ggatcgagtc catgtgggac tgtatgcacg 3181 tgggcgatgt atcgtgcatt ccattcttct tggccaccgt tgtcatcggc aatttagtgg 3241 ttcttaacct tttcttagcc ctgcttttgt caaattttgg ttcatctagc ttatcagcgc 3301 cgacagccga taacgatacc aataaaatag ccgaggcctt caatcgaatt gggcgattta 3361 aaagttgggt taagcgtaat attgctgatt gtttcaagtt aatacgtaac aaattgacaa 3421 atcaaataag tgatcaacca tcaggtgaga ggaccaacca gatcagttgg atttggagcg 3481 aagagcacgg cgacaacgag ctggagctgg gccacgacga gatactcgcc gacgggctca 3541 tcaagaaggg catcaaggag gcgacacagc tggaggtggc catcggtgat ggcatggagt 3601 tcacgataca cggcgacatg aagaacaaca agccgaagaa atccaaatat ctaaataacg 3661 caacgatgat tggcaactca attaaccacc aagacaatag actggaacac gagctaaacc 3721 atagaggttt gtccttacag gacgacgaca ctgccagcat taactcatat ggtagccata 3781 agaatcgacc attcaaggat gagagccaca agggcagcgc cgagacgatg gagggcgagg 3841 agaagcggga cgccagcaag gaggatttag gtatcgatga ggagctcgac gaggagggcg 3901 aattggagga gggcccgctc gacggcgata tcatcataca tgccaacgat gaggatatac 3961 tcgatgaata tccagctgat tgctgccccg attcgtacta taagaaattt ccgatcttag 4021 ccggtgatga tgactcgccg ttctggcaag gatggggcaa tttacgactg aaaacttttc 4081 aattaattga aaataaatat tttgaaacag ctgttatcac tatgatttta atgagtagct 4141 tagctttggc attagaagat gtacatctgc cacaaagacc catactgcag gatattttat 4201 actatatgga cagaatattt acggttatat tcttcttgga aatgttaatc aagtggctgg 4261 cgctcggctt caaagtgtac ttcacgaacg cgtggtgctg gctcgatttc gtcattgtca 4321 tggtatcgct tatcaacttc gttgcttcac ttgttggagc tggtggtatt caagccttca 4381 agactatgcg aacgttaaga gcactgagac cactacgtgc catgtcccgt atgcagggca 4441 tgagggtcgt cgttaatgcg ctggtacaag ctataccgtc catcttcaat gtgctattgg 4501 tgtgtctaat attttggcta atttttgcca taatgggtgt acagcttttt gctggaaaat 4561 attttaagtg cgaggacatg aatggcacga agctcagcca cgagatcata ccaaatcgca 4621 atgcctgcga aagcgagaac tacacgtggg tgaattcagc aatgaatttc gatcatgtag 4681 gtaacgcgta tctgtgcctt ttccaagtgg ccaccttcaa aggctggata caaatcatga 4741 acgatgctat cgattcacga gaggtggaca agcagccaat tcgtgaaacg aacatctaca 4801 tgtatttata tttcgtattc ttcatcatat ttggatcatt tttcacactc aatctgttca 4861 ttggtgttat cattgataat tttaatgagc aaaagaaaaa agcaggtgga tcattagaaa 4921 tgttcatgac agaagatcag aaaaagtact ataatgctat gaaaaagatg ggctctaaaa 4981 aaccattaaa agccattcca agaccaaggt ggcgtccaca agcaatagtc tttgaaatag 5041 taaccgataa gaaattcgat atagtcataa tgttattcat tggtctgaac atgttcacca 5101 tgacactcga tcgttacgat gcgtcggaca cgtacaacgc ggtccttgac tatctcaatg 5161 cgatattcgt agttattttc agttccgaat gtctattaaa aatattcgct ttacgatatc 5221 actattttat tgagccatgg aatttatttg atgtagtagt tgtcatttta tccatcttag 5281 gtctcgtact tagcgatatt atcgagaaat acttcgtatc gccgacactg ctccgagtgg 5341 tgcgcgtggc caaagtgggt cgcgtactgc gtctggtgaa gggcgccaag ggtatacgaa 5401 cgctgctgtt cgccctggcc atgtcgctgc cggcgctgtt caacatctgc ctgctgctgt 5461 tcctggtcat gttcatcttc gcgatattcg gcatgtcgtt cttcatgcat gtgaaggaga 5521 agagcggcat caacgacgtc tacaacttca agacgttcgg acagagcatg atcctgctct 5581 ttcagatgtc tacctcagcc ggttgggatg gtgtactcga cgccattatc aatgaggaag 5641 catgcgatcc acccgacaac gacaaaggct atccgggcaa ttgtggttca gcgaccgttg 5701 gaataacgtt tctcctctca tacctagtta taagcttttt gatagttatt aatatgtaca 5761 ttgctgtcat tctcgagaac tatagtcagg ccaccgagga tgtgcaggag ggtctcaccg 5821 acgacgatta cgatatgtac tatgagatct ggcaacagtt cgatccggag ggcacccagt 5881 acatacgata cgaccagctg tccgagttcc tcgacgtgct ggagcccccg ctccagattc 5941 acaagcccaa caagtacaaa atcatatcga tggacatacc catctgtcgc ggtgacctca 6001 tgtactgtgt ggacatactg gacgcactga ccaaagactt tttcgcgcgc aaaggcaatc 6061 ccattgagga gacgggcgag attggtgaga ttgccgccag gccggacacc gagggctacg 6121 agcccgtctc ctccaccctc tggcgacagc gggaggagta ctgtgcccgc ctcattcaac 6181 atgcctggcg caagcataaa acgcgcgccg agggcggtgg tgcaccgtcc gacgcggaag 6241 gcgacggccc cgaagatggt gatgcgggtg gcggtggcgg ggcggcgctg atgctgggtg 6301 ttctggatgt tccagatgct gctggcgatg cagcaaccac tggctcccat gacggggcaa 6361 cggcactcga tcccgagacc gatccatcgg gagtaccggc ggcagcggcg gtggccccac 6421 agccagccgg tgacggcggc gagggaccgg atggaggagc aacagccgat ccgcacgaga 6481 gcaatgtaaa tagtccgacg atggacggcg cgacggcggg cagcccgggc gcagggagcg 6541 ctggcagcac tggccgacag acggccgttc tcgtggagag cgatgggttt gtgaccaaga 6601 acgggcacaa ggttgtaata cactcgcgtt cgccgagcat aacgtcgcgc acggcggatg 6661 tctgagccag gcctcgcccc cccctccaag atgcacgcga gtattaggtg caggtgcaga 6721 tgcagtgcag tggtggtgcc acaacaacaa caacaacaac agcaggtgcc actggtagct 6781 gcaattgcaa ctgcaacagc agcaacagga agaa