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LOCUS XM_022361501 6817 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X19, mRNA. ACCESSION XM_022361501 VERSION XM_022361501.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022361501.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6817 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6817 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 46 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6668 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X19" /protein_id="XP_022217193.2" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL EDIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFII TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDD GISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE KGNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNI RRGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENG AIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRN QSVGATNGGTTCLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKD VMVLNDIIEQAAGRHSRASDRGVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVW DCCWVWLKLQEWISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYF FTATFAIEATMKLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLL RVFKLAKSWPTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDR FPDGDLPRWNFTDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLV VLNLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNK LTNQISDQPSGKGVCRCISAEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGM EFTIHGDMKNNKPKKSKYLNNATDDDTASINSYGSHKNRPFKDESHKGSAETMEGEEK RDASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDEYPADCCPDSYYKKFPIL AGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLPQRPILQD ILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLVGAGG IQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGV QLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQVAT FKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNE QKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKKFDI VIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYFIEP WNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLF ALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMILLFQ MSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVINMY IAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLEPPL QIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGNPIEETGEIGEIAARPD TEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAGGGGG AALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAAAAVAPQPAGDGGEGPDG GATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVESDGFVTKNGHKVVIHSR SPSITSRTADV" misc_feature 690..1544 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1899..2456 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2685..3320 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3396..4085 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4095..4910 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4878..5036 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4923..4934 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5058..5810 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5841..5984 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gaggtgccgc aatatggtcg caagaaaaaa caaaaagaaa 421 tccgatatga tgacgaggac gaggatgaag gtccacaacc ggatcctaca cttgaacagg 481 gtgtgccaat acctgttcga ctgcagggca gcttccctcc ggaattggcc tccactcccc 541 tcgaggatat cgatcccttc tacagcaata tactgacatt cgtagttgta agcaaaggaa 601 aagatatttt tcgcttttct gcatcaaaag caatgtggct gctcgatcca ttcaatccga 661 tacgtcgtgt ggccatttac attttagtgc atccactatt ttcgttattc atcattacca 721 caattctcgt caactgcatc ctgatgataa tgccgacaac gcccacagtt gagtccactg 781 aggtgatatt caccggaatc tacacatttg aatcagctgt taaagtgatg gcacgaggtt 841 tcattttatg cccgtttacg tatcttagag atgcatggaa ttggctggac ttcgtagtaa 901 tagctttagc ttatgtgacc atgggtatag atttaggtaa tcttgcagcc ttgcgaacgt 961 ttagggtgct gcgagcgctt aaaaccgtag ccattgtgcc aggcttgaag accattgtcg 1021 gtgcggtcat cgaatctgta aagaatctgc gcgatgtgat aattttgaca atgttctccc 1081 tgtcggtgtt cgcgctgatg gggctgcaaa tctacatggg cgtgctaacg cagaagtgca 1141 tcaagaagtt cccgctggac ggctcctggg gcaacctgac cgacgagaac tgggcctatc 1201 acaatagcaa caactctaat tggtattcgg aagacgacgg tatatccttt ccgttgtgcg 1261 gtaatatctc tggagcgggg caatgtgaag acgattacgt gtgtctgcag gggttcgggc 1321 cgaacccgaa ctatggctac accagtttcg attcgttcgg ttgggcgttt ctgtccgcct 1381 tccggctgat gacgcaggac ttctgggagg atctgtatca gctggtgttg cgtgccgcag 1441 gaccctggca catgctgttc tttatagtca tcatcttcct aggttcattc tatcttgtga 1501 atttgatttt ggccattgtt gccatgtcgt atgacgaatt gcaaaagaag gccgaagaag 1561 aagaggctgc cgaagaggag gcgatacgtg aagccgagga agctgccgcc gccaaagcag 1621 ccaagctgga ggagcgcgcc aatgcgcagg cccaggccgc cgccgatgca gctgccgccg 1681 aagaggcggc tcttcatccg gagatggcca agagtccgac gtattcgtgc atcagctatg 1741 agctatttgt gggcggcgag aaaggcaacg atgacaacaa caaggagaag atgtccatac 1801 gcagcgttga ggtggagtcg gagtcggtga gcgttataca aagacaacca gcacctacca 1861 cagcacacca agctaccaaa gttcgtaaag tgagcacgac atccttatcc ttacctggtt 1921 caccgtttaa catacgcagg ggatcacgta gttctcacaa gtacacgatc cggaatggac 1981 gtggacgctt tggtataccc ggcagcgatc gcaagccgtt ggtattgtca acatatcagg 2041 atgctcagca gcacttgccc tatgccgatg attcgaacgc tgttacgccc atgtccgagg 2101 agaacggtgc cattatagtg cccgtttatt atggaaatct aggctccagg cattcatcgt 2161 atacttcgca tcagtccaga atatcgtata cctcacatgg cgatctattg ggcggcatgg 2221 ccgtcatggg cgtcagcaca atgaccaagg agagcaaatt gcgaaatcgc aactcacgca 2281 atcaatcagt gggcgccacc aatggcggca ccacctgcct ggaccccaat cacaaggtcg 2341 agcatcgcga cttcgaaatc ggtctggagt gcacggacga agctggcaag attaaacatc 2401 atgacaatcc ttttatcgag cccgtccaga cacaaacggt agtcgacatg aaagatgtga 2461 tggtactgaa tgacattatc gaacaggccg ctggtcggca cagtcgggct agtgatcgcg 2521 gtgtctccgt ttactatttc ccaacagagg acgatgatga ggatgggccg acattaaaag 2581 acaaggccct cgaagcgcta atgaaaggca tcgaagtgtt ttgtgtgtgg gactgttgct 2641 gggtttggtt gaaattgcag gagtggatat cgctgatcgt cttcgatccc tttgtcgagc 2701 tcttcatcac gctgtgcatt gtggtcaaca cgatgttcat ggccatggac catcacgaca 2761 tgaacaagga gatggaacgc atccttaagt gcggaaatta tttcttcacg gcaacattcg 2821 ccattgaggc aaccatgaaa ctgtgcgcca tgagccccaa atactatttc caggagggct 2881 ggaacatctt tgacttcatc attgtggcac tctcattgct ggagctgggc ctcgagggcg 2941 ttcagggcct ctccgtcttg cgttcgtttc gtttgctgcg tgtattcaaa ttggccaagt 3001 cctggccaac acttaattta ctcatttcga ttatgggacg caccatgggc gctttgggta 3061 atctgacatt tgtactttgc attatcatct tcatctttgc ggtgatggga atgcaactgt 3121 tcggaaagaa ttatcatgat aacaaggatc gcttcccgga cggtgacctg ccccgctgga 3181 acttcaccga cttcatgcac agcttcatga tcgtgtttcg ggtgctatgc ggcgagtgga 3241 tcgagtccat gtgggactgt atgcacgtgg gcgatgtatc gtgcattcca ttcttcttgg 3301 ccaccgttgt catcggcaat ttagtggttc ttaacctttt cttagccctg cttttgtcaa 3361 attttggttc atctagctta tcagcgccga cagccgataa cgataccaat aaaatagccg 3421 aggccttcaa tcgaattggg cgatttaaaa gttgggttaa gcgtaatatt gctgattgtt 3481 tcaagttaat acgtaacaaa ttgacaaatc aaataagtga tcaaccatca ggcaaaggcg 3541 tttgtcgttg tatatctgca gagcacggcg acaacgagct ggagctgggc cacgacgaga 3601 tactcgccga cgggctcatc aagaagggca tcaaggaggc gacacagctg gaggtggcca 3661 tcggtgatgg catggagttc acgatacacg gcgacatgaa gaacaacaag ccgaagaaat 3721 ccaaatatct aaataacgca acggacgacg acactgccag cattaactca tatggtagcc 3781 ataagaatcg accattcaag gatgagagcc acaagggcag cgccgagacg atggagggcg 3841 aggagaagcg ggacgccagc aaggaggatt taggtatcga tgaggagctc gacgaggagg 3901 gcgaattgga ggagggcccg ctcgacggcg atatcatcat acatgccaac gatgaggata 3961 tactcgatga atatccagct gattgctgcc ccgattcgta ctataagaaa tttccgatct 4021 tagccggtga tgatgactcg ccgttctggc aaggatgggg caatttacga ctgaaaactt 4081 ttcaattaat tgaaaataaa tattttgaaa cagctgttat cactatgatt ttaatgagta 4141 gcttagcttt ggcattagaa gatgtacatc tgccacaaag acccatactg caggatattt 4201 tatactatat ggacagaata tttacggtta tattcttctt ggaaatgtta atcaagtggc 4261 tggcgctcgg cttcaaagtg tacttcacga acgcgtggtg ctggctcgat ttcgtcattg 4321 tcatggtatc gcttatcaac ttcgttgctt cacttgttgg agctggtggt attcaagcct 4381 tcaagactat gcgaacgtta agagcactga gaccactacg tgccatgtcc cgtatgcagg 4441 gcatgagggt cgtcgttaat gcgctggtac aagctatacc gtccatcttc aatgtgctat 4501 tggtgtgtct aatattttgg ctaatttttg ccataatggg tgtacagctt tttgctggaa 4561 aatattttaa gtgcgaggac atgaatggca cgaagctcag ccacgagatc ataccaaatc 4621 gcaatgcctg cgaaagcgag aactacacgt gggtgaattc agcaatgaat ttcgatcatg 4681 taggtaacgc gtatctgtgc cttttccaag tggccacctt caaaggctgg atacaaatca 4741 tgaacgatgc tatcgattca cgagaggtgg acaagcagcc aattcgtgaa acgaacatct 4801 acatgtattt atatttcgta ttcttcatca tatttggatc atttttcaca ctcaatctgt 4861 tcattggtgt tatcattgat aattttaatg agcaaaagaa aaaagcaggt ggatcattag 4921 aaatgttcat gacagaagat cagaaaaagt actataatgc tatgaaaaag atgggctcta 4981 aaaaaccatt aaaagccatt ccaagaccaa ggtggcgtcc acaagcaata gtctttgaaa 5041 tagtaaccga taagaaattc gatatagtca taatgttatt cattggtctg aacatgttca 5101 ccatgacact cgatcgttac gatgcgtcgg acacgtacaa cgcggtcctt gactatctca 5161 atgcgatatt cgtagttatt ttcagttccg aatgtctatt aaaaatattc gctttacgat 5221 atcactattt tattgagcca tggaatttat ttgatgtagt agttgtcatt ttatccatct 5281 taggtctcgt acttagcgat attatcgaga aatacttcgt atcgccgaca ctgctccgag 5341 tggtgcgcgt ggccaaagtg ggtcgcgtac tgcgtctggt gaagggcgcc aagggtatac 5401 gaacgctgct gttcgccctg gccatgtcgc tgccggcgct gttcaacatc tgcctgctgc 5461 tgttcctggt catgttcatc ttcgcgatat tcggcatgtc gttcttcatg catgtgaagg 5521 agaagagcgg catcaacgac gtctacaact tcaagacgtt cggacagagc atgatcctgc 5581 tctttcagat gtctacctca gccggttggg atggtgtact cgacgccatt atcaatgagg 5641 aagcatgcga tccacccgac aacgacaaag gctatccggg caattgtggt tcagcgaccg 5701 ttggaataac gtttctcctc tcatacctag ttataagctt tttgatagtt attaatatgt 5761 acattgctgt cattctcgag aactatagtc aggccaccga ggatgtgcag gagggtctca 5821 ccgacgacga ttacgatatg tactatgaga tctggcaaca gttcgatccg gagggcaccc 5881 agtacatacg atacgaccag ctgtccgagt tcctcgacgt gctggagccc ccgctccaga 5941 ttcacaagcc caacaagtac aaaatcatat cgatggacat acccatctgt cgcggtgacc 6001 tcatgtactg tgtggacata ctggacgcac tgaccaaaga ctttttcgcg cgcaaaggca 6061 atcccattga ggagacgggc gagattggtg agattgccgc caggccggac accgagggct 6121 acgagcccgt ctcctccacc ctctggcgac agcgggagga gtactgtgcc cgcctcattc 6181 aacatgcctg gcgcaagcat aaaacgcgcg ccgagggcgg tggtgcaccg tccgacgcgg 6241 aaggcgacgg ccccgaagat ggtgatgcgg gtggcggtgg cggggcggcg ctgatgctgg 6301 gtgttctgga tgttccagat gctgctggcg atgcagcaac cactggctcc catgacgggg 6361 caacggcact cgatcccgag accgatccat cgggagtacc ggcggcagcg gcggtggccc 6421 cacagccagc cggtgacggc ggcgagggac cggatggagg agcaacagcc gatccgcacg 6481 agagcaatgt aaatagtccg acgatggacg gcgcgacggc gggcagcccg ggcgcaggga 6541 gcgctggcag cactggccga cagacggccg ttctcgtgga gagcgatggg tttgtgacca 6601 agaacgggca caaggttgta atacactcgc gttcgccgag cataacgtcg cgcacggcgg 6661 atgtctgagc caggcctcgc ccccccctcc aagatgcacg cgagtattag gtgcaggtgc 6721 agatgcagtg cagtggtggt gccacaacaa caacaacaac aacagcaggt gccactggta 6781 gctgcaattg caactgcaac agcagcaaca ggaagaa