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LOCUS XM_022361500 6826 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X16, mRNA. ACCESSION XM_022361500 VERSION XM_022361500.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022361500.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6826 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6826 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 59 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6677 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X16" /protein_id="XP_022217192.2" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLEDIDPFYSNILT FVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMIM PTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDFVVIALAYVTMG IDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALM GLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDGISFPLCGNISG AGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRAAGPW HMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIREAEEAAAAKAA KLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEKGNDDNNKEKMS IRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNIRRGSRSSHKYTI RNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLG SRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTC LDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAA GRHSRASDRGVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEW ISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMK LCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTL NLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFT DFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSN FGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSEH GDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNA TMIGNSINHQDNRLEHELNHRGLSLQDDDTASINSYGSHKNRPFKDESHKGSAETMEG EEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDEYPADCCPDSYYKKF PILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLPQRPI LQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLVG AGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAI MGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQ VATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDN FNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKK FDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYF IEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRT LLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMIL LFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVI NMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLE PPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGNPIEETGEIGEIAA RPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAGG GGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAAAAVAPQPAGDGGEG PDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVESDGFVTKNGHKVVI HSRSPSITSRTADV" misc_feature 654..1508 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1863..2420 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2649..3284 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3360..4094 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4104..4919 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4887..5045 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4932..4943 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5067..5819 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5850..5993 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gagatccgat atgatgacga ggacgaggat gaaggtccac 421 aaccggatcc tacacttgaa cagggtgtgc caatacctgt tcgactgcag ggcagcttcc 481 ctccggaatt ggcctccact cccctcgagg atatcgatcc cttctacagc aatatactga 541 cattcgtagt tgtaagcaaa ggaaaagata tttttcgctt ttctgcatca aaagcaatgt 601 ggctgctcga tccattcaat ccgatacgtc gtgtggccat ttacatttta gtgcatccac 661 tattttcgtt attcatcatt accacaattc tcgtcaactg catcctgatg ataatgccga 721 caacgcccac agttgagtcc actgaggtga tattcaccgg aatctacaca tttgaatcag 781 ctgttaaagt gatggcacga ggtttcattt tatgcccgtt tacgtatctt agagatgcat 841 ggaattggct ggacttcgta gtaatagctt tagcttatgt gaccatgggt atagatttag 901 gtaatcttgc agccttgcga acgtttaggg tgctgcgagc gcttaaaacc gtagccattg 961 tgccaggctt gaagaccatt gtcggtgcgg tcatcgaatc tgtaaagaat ctgcgcgatg 1021 tgataatttt gacaatgttc tccctgtcgg tgttcgcgct gatggggctg caaatctaca 1081 tgggcgtgct aacgcagaag tgcatcaaga agttcccgct ggacggctcc tggggcaacc 1141 tgaccgacga gaactgggcc tatcacaata gcaacaactc taattggtat tcggaagacg 1201 acggtatatc ctttccgttg tgcggtaata tctctggagc ggggcaatgt gaagacgatt 1261 acgtgtgtct gcaggggttc gggccgaacc cgaactatgg ctacaccagt ttcgattcgt 1321 tcggttgggc gtttctgtcc gccttccggc tgatgacgca ggacttctgg gaggatctgt 1381 atcagctggt gttgcgtgcc gcaggaccct ggcacatgct gttctttata gtcatcatct 1441 tcctaggttc attctatctt gtgaatttga ttttggccat tgttgccatg tcgtatgacg 1501 aattgcaaaa gaaggccgaa gaagaagagg ctgccgaaga ggaggcgata cgtgaagccg 1561 aggaagctgc cgccgccaaa gcagccaagc tggaggagcg cgccaatgcg caggcccagg 1621 ccgccgccga tgcagctgcc gccgaagagg cggctcttca tccggagatg gccaagagtc 1681 cgacgtattc gtgcatcagc tatgagctat ttgtgggcgg cgagaaaggc aacgatgaca 1741 acaacaagga gaagatgtcc atacgcagcg ttgaggtgga gtcggagtcg gtgagcgtta 1801 tacaaagaca accagcacct accacagcac accaagctac caaagttcgt aaagtgagca 1861 cgacatcctt atccttacct ggttcaccgt ttaacatacg caggggatca cgtagttctc 1921 acaagtacac gatccggaat ggacgtggac gctttggtat acccggcagc gatcgcaagc 1981 cgttggtatt gtcaacatat caggatgctc agcagcactt gccctatgcc gatgattcga 2041 acgctgttac gcccatgtcc gaggagaacg gtgccattat agtgcccgtt tattatggaa 2101 atctaggctc caggcattca tcgtatactt cgcatcagtc cagaatatcg tatacctcac 2161 atggcgatct attgggcggc atggccgtca tgggcgtcag cacaatgacc aaggagagca 2221 aattgcgaaa tcgcaactca cgcaatcaat cagtgggcgc caccaatggc ggcaccacct 2281 gcctggaccc caatcacaag gtcgagcatc gcgacttcga aatcggtctg gagtgcacgg 2341 acgaagctgg caagattaaa catcatgaca atccttttat cgagcccgtc cagacacaaa 2401 cggtagtcga catgaaagat gtgatggtac tgaatgacat tatcgaacag gccgctggtc 2461 ggcacagtcg ggctagtgat cgcggtgtct ccgtttacta tttcccaaca gaggacgatg 2521 atgaggatgg gccgacatta aaagacaagg ccctcgaagc gctaatgaaa ggcatcgaag 2581 tgttttgtgt gtgggactgt tgctgggttt ggttgaaatt gcaggagtgg atatcgctga 2641 tcgtcttcga tccctttgtc gagctcttca tcacgctgtg cattgtggtc aacacgatgt 2701 tcatggccat ggaccatcac gacatgaaca aggagatgga acgcatcctt aagtgcggaa 2761 attatttctt cacggcaaca ttcgccattg aggcaaccat gaaactgtgc gccatgagcc 2821 ccaaatacta tttccaggag ggctggaaca tctttgactt catcattgtg gcactctcat 2881 tgctggagct gggcctcgag ggcgttcagg gcctctccgt cttgcgttcg tttcgtttgc 2941 tgcgtgtatt caaattggcc aagtcctggc caacacttaa tttactcatt tcgattatgg 3001 gacgcaccat gggcgctttg ggtaatctga catttgtact ttgcattatc atcttcatct 3061 ttgcggtgat gggaatgcaa ctgttcggaa agaattatca tgataacaag gatcgcttcc 3121 cggacggtga cctgccccgc tggaacttca ccgacttcat gcacagcttc atgatcgtgt 3181 ttcgggtgct atgcggcgag tggatcgagt ccatgtggga ctgtatgcac gtgggcgatg 3241 tatcgtgcat tccattcttc ttggccaccg ttgtcatcgg caatttagtg gttcttaacc 3301 ttttcttagc cctgcttttg tcaaattttg gttcatctag cttatcagcg ccgacagccg 3361 ataacgatac caataaaata gccgaggcct tcaatcgaat tgggcgattt aaaagttggg 3421 ttaagcgtaa tattgctgat tgtttcaagt taatacgtaa caaattgaca aatcaaataa 3481 gtgatcaacc atcagagcac ggcgacaacg agctggagct gggccacgac gagatactcg 3541 ccgacgggct catcaagaag ggcatcaagg aggcgacaca gctggaggtg gccatcggtg 3601 atggcatgga gttcacgata cacggcgaca tgaagaacaa caagccgaag aaatccaaat 3661 atctaaataa cgcaacgatg attggcaact caattaacca ccaagacaat agactggaac 3721 acgagctaaa ccatagaggt ttgtccttac aggacgacga cactgccagc attaactcat 3781 atggtagcca taagaatcga ccattcaagg atgagagcca caagggcagc gccgagacga 3841 tggagggcga ggagaagcgg gacgccagca aggaggattt aggtatcgat gaggagctcg 3901 acgaggaggg cgaattggag gagggcccgc tcgacggcga tatcatcata catgccaacg 3961 atgaggatat actcgatgaa tatccagctg attgctgccc cgattcgtac tataagaaat 4021 ttccgatctt agccggtgat gatgactcgc cgttctggca aggatggggc aatttacgac 4081 tgaaaacttt tcaattaatt gaaaataaat attttgaaac agctgttatc actatgattt 4141 taatgagtag cttagctttg gcattagaag atgtacatct gccacaaaga cccatactgc 4201 aggatatttt atactatatg gacagaatat ttacggttat attcttcttg gaaatgttaa 4261 tcaagtggct ggcgctcggc ttcaaagtgt acttcacgaa cgcgtggtgc tggctcgatt 4321 tcgtcattgt catggtatcg cttatcaact tcgttgcttc acttgttgga gctggtggta 4381 ttcaagcctt caagactatg cgaacgttaa gagcactgag accactacgt gccatgtccc 4441 gtatgcaggg catgagggtc gtcgttaatg cgctggtaca agctataccg tccatcttca 4501 atgtgctatt ggtgtgtcta atattttggc taatttttgc cataatgggt gtacagcttt 4561 ttgctggaaa atattttaag tgcgaggaca tgaatggcac gaagctcagc cacgagatca 4621 taccaaatcg caatgcctgc gaaagcgaga actacacgtg ggtgaattca gcaatgaatt 4681 tcgatcatgt aggtaacgcg tatctgtgcc ttttccaagt ggccaccttc aaaggctgga 4741 tacaaatcat gaacgatgct atcgattcac gagaggtgga caagcagcca attcgtgaaa 4801 cgaacatcta catgtattta tatttcgtat tcttcatcat atttggatca tttttcacac 4861 tcaatctgtt cattggtgtt atcattgata attttaatga gcaaaagaaa aaagcaggtg 4921 gatcattaga aatgttcatg acagaagatc agaaaaagta ctataatgct atgaaaaaga 4981 tgggctctaa aaaaccatta aaagccattc caagaccaag gtggcgtcca caagcaatag 5041 tctttgaaat agtaaccgat aagaaattcg atatagtcat aatgttattc attggtctga 5101 acatgttcac catgacactc gatcgttacg atgcgtcgga cacgtacaac gcggtccttg 5161 actatctcaa tgcgatattc gtagttattt tcagttccga atgtctatta aaaatattcg 5221 ctttacgata tcactatttt attgagccat ggaatttatt tgatgtagta gttgtcattt 5281 tatccatctt aggtctcgta cttagcgata ttatcgagaa atacttcgta tcgccgacac 5341 tgctccgagt ggtgcgcgtg gccaaagtgg gtcgcgtact gcgtctggtg aagggcgcca 5401 agggtatacg aacgctgctg ttcgccctgg ccatgtcgct gccggcgctg ttcaacatct 5461 gcctgctgct gttcctggtc atgttcatct tcgcgatatt cggcatgtcg ttcttcatgc 5521 atgtgaagga gaagagcggc atcaacgacg tctacaactt caagacgttc ggacagagca 5581 tgatcctgct ctttcagatg tctacctcag ccggttggga tggtgtactc gacgccatta 5641 tcaatgagga agcatgcgat ccacccgaca acgacaaagg ctatccgggc aattgtggtt 5701 cagcgaccgt tggaataacg tttctcctct catacctagt tataagcttt ttgatagtta 5761 ttaatatgta cattgctgtc attctcgaga actatagtca ggccaccgag gatgtgcagg 5821 agggtctcac cgacgacgat tacgatatgt actatgagat ctggcaacag ttcgatccgg 5881 agggcaccca gtacatacga tacgaccagc tgtccgagtt cctcgacgtg ctggagcccc 5941 cgctccagat tcacaagccc aacaagtaca aaatcatatc gatggacata cccatctgtc 6001 gcggtgacct catgtactgt gtggacatac tggacgcact gaccaaagac tttttcgcgc 6061 gcaaaggcaa tcccattgag gagacgggcg agattggtga gattgccgcc aggccggaca 6121 ccgagggcta cgagcccgtc tcctccaccc tctggcgaca gcgggaggag tactgtgccc 6181 gcctcattca acatgcctgg cgcaagcata aaacgcgcgc cgagggcggt ggtgcaccgt 6241 ccgacgcgga aggcgacggc cccgaagatg gtgatgcggg tggcggtggc ggggcggcgc 6301 tgatgctggg tgttctggat gttccagatg ctgctggcga tgcagcaacc actggctccc 6361 atgacggggc aacggcactc gatcccgaga ccgatccatc gggagtaccg gcggcagcgg 6421 cggtggcccc acagccagcc ggtgacggcg gcgagggacc ggatggagga gcaacagccg 6481 atccgcacga gagcaatgta aatagtccga cgatggacgg cgcgacggcg ggcagcccgg 6541 gcgcagggag cgctggcagc actggccgac agacggccgt tctcgtggag agcgatgggt 6601 ttgtgaccaa gaacgggcac aaggttgtaa tacactcgcg ttcgccgagc ataacgtcgc 6661 gcacggcgga tgtctgagcc aggcctcgcc cccccctcca agatgcacgc gagtattagg 6721 tgcaggtgca gatgcagtgc agtggtggtg ccacaacaac aacaacaaca acagcaggtg 6781 ccactggtag ctgcaattgc aactgcaaca gcagcaacag gaagaa