PREDICTED: Drosophila obscura sodium channel protein para
LOCUS XM_022361500 6826 bp mRNA linear INV 14-MAY-2021
(LOC111070739), transcript variant X16, mRNA.
ACCESSION XM_022361500
VERSION XM_022361500.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022361500.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6826
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..6826
/gene="LOC111070739"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 59 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 7 samples with support for all annotated
introns"
/db_xref="GeneID:111070739"
CDS 237..6677
/gene="LOC111070739"
/codon_start=1
/product="sodium channel protein para isoform X16"
/protein_id="XP_022217192.2"
/db_xref="GeneID:111070739"
/translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK
RAEGEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLEDIDPFYSNILT
FVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMIM
PTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDFVVIALAYVTMG
IDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALM
GLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDGISFPLCGNISG
AGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRAAGPW
HMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIREAEEAAAAKAA
KLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEKGNDDNNKEKMS
IRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNIRRGSRSSHKYTI
RNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLG
SRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTC
LDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAA
GRHSRASDRGVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEW
ISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMK
LCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTL
NLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFT
DFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSN
FGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSEH
GDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNA
TMIGNSINHQDNRLEHELNHRGLSLQDDDTASINSYGSHKNRPFKDESHKGSAETMEG
EEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDEYPADCCPDSYYKKF
PILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLPQRPI
LQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLVG
AGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAI
MGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQ
VATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDN
FNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKK
FDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYF
IEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRT
LLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMIL
LFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVI
NMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLE
PPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGNPIEETGEIGEIAA
RPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAGG
GGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAAAAVAPQPAGDGGEG
PDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVESDGFVTKNGHKVVI
HSRSPSITSRTADV"
misc_feature 654..1508
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 1863..2420
/gene="LOC111070739"
/note="Cytoplasmic domain of voltage-gated Na+ ion
channel; Region: Na_trans_cytopl; pfam11933"
/db_xref="CDD:463401"
misc_feature 2649..3284
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 3360..4094
/gene="LOC111070739"
/note="Sodium ion transport-associated; Region:
Na_trans_assoc; pfam06512"
/db_xref="CDD:461936"
misc_feature 4104..4919
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 4887..5045
/gene="LOC111070739"
/note="Inactivation gate of the voltage-gated sodium
channel alpha subunits; Region: Na_channel_gate; cd13433"
/db_xref="CDD:240441"
misc_feature 4932..4943
/gene="LOC111070739"
/note="putative hydrophobic latch; other site"
/db_xref="CDD:240441"
misc_feature 5067..5819
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 5850..5993
/gene="LOC111070739"
/note="Voltage-dependent L-type calcium channel,
IQ-associated; Region: GPHH; pfam16905"
/db_xref="CDD:465306"
ORIGIN
1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca
61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg
121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac
181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga
241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg
301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg
361 aaagaaagag agccgaggga gagatccgat atgatgacga ggacgaggat gaaggtccac
421 aaccggatcc tacacttgaa cagggtgtgc caatacctgt tcgactgcag ggcagcttcc
481 ctccggaatt ggcctccact cccctcgagg atatcgatcc cttctacagc aatatactga
541 cattcgtagt tgtaagcaaa ggaaaagata tttttcgctt ttctgcatca aaagcaatgt
601 ggctgctcga tccattcaat ccgatacgtc gtgtggccat ttacatttta gtgcatccac
661 tattttcgtt attcatcatt accacaattc tcgtcaactg catcctgatg ataatgccga
721 caacgcccac agttgagtcc actgaggtga tattcaccgg aatctacaca tttgaatcag
781 ctgttaaagt gatggcacga ggtttcattt tatgcccgtt tacgtatctt agagatgcat
841 ggaattggct ggacttcgta gtaatagctt tagcttatgt gaccatgggt atagatttag
901 gtaatcttgc agccttgcga acgtttaggg tgctgcgagc gcttaaaacc gtagccattg
961 tgccaggctt gaagaccatt gtcggtgcgg tcatcgaatc tgtaaagaat ctgcgcgatg
1021 tgataatttt gacaatgttc tccctgtcgg tgttcgcgct gatggggctg caaatctaca
1081 tgggcgtgct aacgcagaag tgcatcaaga agttcccgct ggacggctcc tggggcaacc
1141 tgaccgacga gaactgggcc tatcacaata gcaacaactc taattggtat tcggaagacg
1201 acggtatatc ctttccgttg tgcggtaata tctctggagc ggggcaatgt gaagacgatt
1261 acgtgtgtct gcaggggttc gggccgaacc cgaactatgg ctacaccagt ttcgattcgt
1321 tcggttgggc gtttctgtcc gccttccggc tgatgacgca ggacttctgg gaggatctgt
1381 atcagctggt gttgcgtgcc gcaggaccct ggcacatgct gttctttata gtcatcatct
1441 tcctaggttc attctatctt gtgaatttga ttttggccat tgttgccatg tcgtatgacg
1501 aattgcaaaa gaaggccgaa gaagaagagg ctgccgaaga ggaggcgata cgtgaagccg
1561 aggaagctgc cgccgccaaa gcagccaagc tggaggagcg cgccaatgcg caggcccagg
1621 ccgccgccga tgcagctgcc gccgaagagg cggctcttca tccggagatg gccaagagtc
1681 cgacgtattc gtgcatcagc tatgagctat ttgtgggcgg cgagaaaggc aacgatgaca
1741 acaacaagga gaagatgtcc atacgcagcg ttgaggtgga gtcggagtcg gtgagcgtta
1801 tacaaagaca accagcacct accacagcac accaagctac caaagttcgt aaagtgagca
1861 cgacatcctt atccttacct ggttcaccgt ttaacatacg caggggatca cgtagttctc
1921 acaagtacac gatccggaat ggacgtggac gctttggtat acccggcagc gatcgcaagc
1981 cgttggtatt gtcaacatat caggatgctc agcagcactt gccctatgcc gatgattcga
2041 acgctgttac gcccatgtcc gaggagaacg gtgccattat agtgcccgtt tattatggaa
2101 atctaggctc caggcattca tcgtatactt cgcatcagtc cagaatatcg tatacctcac
2161 atggcgatct attgggcggc atggccgtca tgggcgtcag cacaatgacc aaggagagca
2221 aattgcgaaa tcgcaactca cgcaatcaat cagtgggcgc caccaatggc ggcaccacct
2281 gcctggaccc caatcacaag gtcgagcatc gcgacttcga aatcggtctg gagtgcacgg
2341 acgaagctgg caagattaaa catcatgaca atccttttat cgagcccgtc cagacacaaa
2401 cggtagtcga catgaaagat gtgatggtac tgaatgacat tatcgaacag gccgctggtc
2461 ggcacagtcg ggctagtgat cgcggtgtct ccgtttacta tttcccaaca gaggacgatg
2521 atgaggatgg gccgacatta aaagacaagg ccctcgaagc gctaatgaaa ggcatcgaag
2581 tgttttgtgt gtgggactgt tgctgggttt ggttgaaatt gcaggagtgg atatcgctga
2641 tcgtcttcga tccctttgtc gagctcttca tcacgctgtg cattgtggtc aacacgatgt
2701 tcatggccat ggaccatcac gacatgaaca aggagatgga acgcatcctt aagtgcggaa
2761 attatttctt cacggcaaca ttcgccattg aggcaaccat gaaactgtgc gccatgagcc
2821 ccaaatacta tttccaggag ggctggaaca tctttgactt catcattgtg gcactctcat
2881 tgctggagct gggcctcgag ggcgttcagg gcctctccgt cttgcgttcg tttcgtttgc
2941 tgcgtgtatt caaattggcc aagtcctggc caacacttaa tttactcatt tcgattatgg
3001 gacgcaccat gggcgctttg ggtaatctga catttgtact ttgcattatc atcttcatct
3061 ttgcggtgat gggaatgcaa ctgttcggaa agaattatca tgataacaag gatcgcttcc
3121 cggacggtga cctgccccgc tggaacttca ccgacttcat gcacagcttc atgatcgtgt
3181 ttcgggtgct atgcggcgag tggatcgagt ccatgtggga ctgtatgcac gtgggcgatg
3241 tatcgtgcat tccattcttc ttggccaccg ttgtcatcgg caatttagtg gttcttaacc
3301 ttttcttagc cctgcttttg tcaaattttg gttcatctag cttatcagcg ccgacagccg
3361 ataacgatac caataaaata gccgaggcct tcaatcgaat tgggcgattt aaaagttggg
3421 ttaagcgtaa tattgctgat tgtttcaagt taatacgtaa caaattgaca aatcaaataa
3481 gtgatcaacc atcagagcac ggcgacaacg agctggagct gggccacgac gagatactcg
3541 ccgacgggct catcaagaag ggcatcaagg aggcgacaca gctggaggtg gccatcggtg
3601 atggcatgga gttcacgata cacggcgaca tgaagaacaa caagccgaag aaatccaaat
3661 atctaaataa cgcaacgatg attggcaact caattaacca ccaagacaat agactggaac
3721 acgagctaaa ccatagaggt ttgtccttac aggacgacga cactgccagc attaactcat
3781 atggtagcca taagaatcga ccattcaagg atgagagcca caagggcagc gccgagacga
3841 tggagggcga ggagaagcgg gacgccagca aggaggattt aggtatcgat gaggagctcg
3901 acgaggaggg cgaattggag gagggcccgc tcgacggcga tatcatcata catgccaacg
3961 atgaggatat actcgatgaa tatccagctg attgctgccc cgattcgtac tataagaaat
4021 ttccgatctt agccggtgat gatgactcgc cgttctggca aggatggggc aatttacgac
4081 tgaaaacttt tcaattaatt gaaaataaat attttgaaac agctgttatc actatgattt
4141 taatgagtag cttagctttg gcattagaag atgtacatct gccacaaaga cccatactgc
4201 aggatatttt atactatatg gacagaatat ttacggttat attcttcttg gaaatgttaa
4261 tcaagtggct ggcgctcggc ttcaaagtgt acttcacgaa cgcgtggtgc tggctcgatt
4321 tcgtcattgt catggtatcg cttatcaact tcgttgcttc acttgttgga gctggtggta
4381 ttcaagcctt caagactatg cgaacgttaa gagcactgag accactacgt gccatgtccc
4441 gtatgcaggg catgagggtc gtcgttaatg cgctggtaca agctataccg tccatcttca
4501 atgtgctatt ggtgtgtcta atattttggc taatttttgc cataatgggt gtacagcttt
4561 ttgctggaaa atattttaag tgcgaggaca tgaatggcac gaagctcagc cacgagatca
4621 taccaaatcg caatgcctgc gaaagcgaga actacacgtg ggtgaattca gcaatgaatt
4681 tcgatcatgt aggtaacgcg tatctgtgcc ttttccaagt ggccaccttc aaaggctgga
4741 tacaaatcat gaacgatgct atcgattcac gagaggtgga caagcagcca attcgtgaaa
4801 cgaacatcta catgtattta tatttcgtat tcttcatcat atttggatca tttttcacac
4861 tcaatctgtt cattggtgtt atcattgata attttaatga gcaaaagaaa aaagcaggtg
4921 gatcattaga aatgttcatg acagaagatc agaaaaagta ctataatgct atgaaaaaga
4981 tgggctctaa aaaaccatta aaagccattc caagaccaag gtggcgtcca caagcaatag
5041 tctttgaaat agtaaccgat aagaaattcg atatagtcat aatgttattc attggtctga
5101 acatgttcac catgacactc gatcgttacg atgcgtcgga cacgtacaac gcggtccttg
5161 actatctcaa tgcgatattc gtagttattt tcagttccga atgtctatta aaaatattcg
5221 ctttacgata tcactatttt attgagccat ggaatttatt tgatgtagta gttgtcattt
5281 tatccatctt aggtctcgta cttagcgata ttatcgagaa atacttcgta tcgccgacac
5341 tgctccgagt ggtgcgcgtg gccaaagtgg gtcgcgtact gcgtctggtg aagggcgcca
5401 agggtatacg aacgctgctg ttcgccctgg ccatgtcgct gccggcgctg ttcaacatct
5461 gcctgctgct gttcctggtc atgttcatct tcgcgatatt cggcatgtcg ttcttcatgc
5521 atgtgaagga gaagagcggc atcaacgacg tctacaactt caagacgttc ggacagagca
5581 tgatcctgct ctttcagatg tctacctcag ccggttggga tggtgtactc gacgccatta
5641 tcaatgagga agcatgcgat ccacccgaca acgacaaagg ctatccgggc aattgtggtt
5701 cagcgaccgt tggaataacg tttctcctct catacctagt tataagcttt ttgatagtta
5761 ttaatatgta cattgctgtc attctcgaga actatagtca ggccaccgag gatgtgcagg
5821 agggtctcac cgacgacgat tacgatatgt actatgagat ctggcaacag ttcgatccgg
5881 agggcaccca gtacatacga tacgaccagc tgtccgagtt cctcgacgtg ctggagcccc
5941 cgctccagat tcacaagccc aacaagtaca aaatcatatc gatggacata cccatctgtc
6001 gcggtgacct catgtactgt gtggacatac tggacgcact gaccaaagac tttttcgcgc
6061 gcaaaggcaa tcccattgag gagacgggcg agattggtga gattgccgcc aggccggaca
6121 ccgagggcta cgagcccgtc tcctccaccc tctggcgaca gcgggaggag tactgtgccc
6181 gcctcattca acatgcctgg cgcaagcata aaacgcgcgc cgagggcggt ggtgcaccgt
6241 ccgacgcgga aggcgacggc cccgaagatg gtgatgcggg tggcggtggc ggggcggcgc
6301 tgatgctggg tgttctggat gttccagatg ctgctggcga tgcagcaacc actggctccc
6361 atgacggggc aacggcactc gatcccgaga ccgatccatc gggagtaccg gcggcagcgg
6421 cggtggcccc acagccagcc ggtgacggcg gcgagggacc ggatggagga gcaacagccg
6481 atccgcacga gagcaatgta aatagtccga cgatggacgg cgcgacggcg ggcagcccgg
6541 gcgcagggag cgctggcagc actggccgac agacggccgt tctcgtggag agcgatgggt
6601 ttgtgaccaa gaacgggcac aaggttgtaa tacactcgcg ttcgccgagc ataacgtcgc
6661 gcacggcgga tgtctgagcc aggcctcgcc cccccctcca agatgcacgc gagtattagg
6721 tgcaggtgca gatgcagtgc agtggtggtg ccacaacaac aacaacaaca acagcaggtg
6781 ccactggtag ctgcaattgc aactgcaaca gcagcaacag gaagaa