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LOCUS XM_022361498 6826 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X18, mRNA. ACCESSION XM_022361498 VERSION XM_022361498.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022361498.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6826 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6826 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 43 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6677 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X18" /protein_id="XP_022217190.2" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL EDIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFII TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDD GISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE KGNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNI RRGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENG AIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRN QSVGATNGGTTCLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKD VMVLNDIIEQAAGRHSRASDRGVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVW DCCWVWLKLQEWISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYF FTATFAIEATMKLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLL RVFKLAKSWPTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDR FPDGDLPRWNFTDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLV VLNLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNK LTNQISDQPSGERTNQISWIWSEEHGDNELELGHDEILADGLIKKGIKEATQLEVAIG DGMEFTIHGDMKNNKPKKSKYLNNATDDDTASINSYGSHKNRPFKDESHKGSAETMEG EEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDEYPADCCPDSYYKKF PILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLPQRPI LQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLVG AGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAI MGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLFQ VATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDN FNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDKK FDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYHYF IEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRT LLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMIL LFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIVI NMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVLE PPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGNPIEETGEIGEIAA RPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAGG GGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAAAAVAPQPAGDGGEG PDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVESDGFVTKNGHKVVI HSRSPSITSRTADV" misc_feature 690..1544 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1899..2456 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2685..3320 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3396..4094 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4104..4919 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4887..5045 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4932..4943 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5067..5819 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5850..5993 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gaggtgccgc aatatggtcg caagaaaaaa caaaaagaaa 421 tccgatatga tgacgaggac gaggatgaag gtccacaacc ggatcctaca cttgaacagg 481 gtgtgccaat acctgttcga ctgcagggca gcttccctcc ggaattggcc tccactcccc 541 tcgaggatat cgatcccttc tacagcaata tactgacatt cgtagttgta agcaaaggaa 601 aagatatttt tcgcttttct gcatcaaaag caatgtggct gctcgatcca ttcaatccga 661 tacgtcgtgt ggccatttac attttagtgc atccactatt ttcgttattc atcattacca 721 caattctcgt caactgcatc ctgatgataa tgccgacaac gcccacagtt gagtccactg 781 aggtgatatt caccggaatc tacacatttg aatcagctgt taaagtgatg gcacgaggtt 841 tcattttatg cccgtttacg tatcttagag atgcatggaa ttggctggac ttcgtagtaa 901 tagctttagc ttatgtgacc atgggtatag atttaggtaa tcttgcagcc ttgcgaacgt 961 ttagggtgct gcgagcgctt aaaaccgtag ccattgtgcc aggcttgaag accattgtcg 1021 gtgcggtcat cgaatctgta aagaatctgc gcgatgtgat aattttgaca atgttctccc 1081 tgtcggtgtt cgcgctgatg gggctgcaaa tctacatggg cgtgctaacg cagaagtgca 1141 tcaagaagtt cccgctggac ggctcctggg gcaacctgac cgacgagaac tgggcctatc 1201 acaatagcaa caactctaat tggtattcgg aagacgacgg tatatccttt ccgttgtgcg 1261 gtaatatctc tggagcgggg caatgtgaag acgattacgt gtgtctgcag gggttcgggc 1321 cgaacccgaa ctatggctac accagtttcg attcgttcgg ttgggcgttt ctgtccgcct 1381 tccggctgat gacgcaggac ttctgggagg atctgtatca gctggtgttg cgtgccgcag 1441 gaccctggca catgctgttc tttatagtca tcatcttcct aggttcattc tatcttgtga 1501 atttgatttt ggccattgtt gccatgtcgt atgacgaatt gcaaaagaag gccgaagaag 1561 aagaggctgc cgaagaggag gcgatacgtg aagccgagga agctgccgcc gccaaagcag 1621 ccaagctgga ggagcgcgcc aatgcgcagg cccaggccgc cgccgatgca gctgccgccg 1681 aagaggcggc tcttcatccg gagatggcca agagtccgac gtattcgtgc atcagctatg 1741 agctatttgt gggcggcgag aaaggcaacg atgacaacaa caaggagaag atgtccatac 1801 gcagcgttga ggtggagtcg gagtcggtga gcgttataca aagacaacca gcacctacca 1861 cagcacacca agctaccaaa gttcgtaaag tgagcacgac atccttatcc ttacctggtt 1921 caccgtttaa catacgcagg ggatcacgta gttctcacaa gtacacgatc cggaatggac 1981 gtggacgctt tggtataccc ggcagcgatc gcaagccgtt ggtattgtca acatatcagg 2041 atgctcagca gcacttgccc tatgccgatg attcgaacgc tgttacgccc atgtccgagg 2101 agaacggtgc cattatagtg cccgtttatt atggaaatct aggctccagg cattcatcgt 2161 atacttcgca tcagtccaga atatcgtata cctcacatgg cgatctattg ggcggcatgg 2221 ccgtcatggg cgtcagcaca atgaccaagg agagcaaatt gcgaaatcgc aactcacgca 2281 atcaatcagt gggcgccacc aatggcggca ccacctgcct ggaccccaat cacaaggtcg 2341 agcatcgcga cttcgaaatc ggtctggagt gcacggacga agctggcaag attaaacatc 2401 atgacaatcc ttttatcgag cccgtccaga cacaaacggt agtcgacatg aaagatgtga 2461 tggtactgaa tgacattatc gaacaggccg ctggtcggca cagtcgggct agtgatcgcg 2521 gtgtctccgt ttactatttc ccaacagagg acgatgatga ggatgggccg acattaaaag 2581 acaaggccct cgaagcgcta atgaaaggca tcgaagtgtt ttgtgtgtgg gactgttgct 2641 gggtttggtt gaaattgcag gagtggatat cgctgatcgt cttcgatccc tttgtcgagc 2701 tcttcatcac gctgtgcatt gtggtcaaca cgatgttcat ggccatggac catcacgaca 2761 tgaacaagga gatggaacgc atccttaagt gcggaaatta tttcttcacg gcaacattcg 2821 ccattgaggc aaccatgaaa ctgtgcgcca tgagccccaa atactatttc caggagggct 2881 ggaacatctt tgacttcatc attgtggcac tctcattgct ggagctgggc ctcgagggcg 2941 ttcagggcct ctccgtcttg cgttcgtttc gtttgctgcg tgtattcaaa ttggccaagt 3001 cctggccaac acttaattta ctcatttcga ttatgggacg caccatgggc gctttgggta 3061 atctgacatt tgtactttgc attatcatct tcatctttgc ggtgatggga atgcaactgt 3121 tcggaaagaa ttatcatgat aacaaggatc gcttcccgga cggtgacctg ccccgctgga 3181 acttcaccga cttcatgcac agcttcatga tcgtgtttcg ggtgctatgc ggcgagtgga 3241 tcgagtccat gtgggactgt atgcacgtgg gcgatgtatc gtgcattcca ttcttcttgg 3301 ccaccgttgt catcggcaat ttagtggttc ttaacctttt cttagccctg cttttgtcaa 3361 attttggttc atctagctta tcagcgccga cagccgataa cgataccaat aaaatagccg 3421 aggccttcaa tcgaattggg cgatttaaaa gttgggttaa gcgtaatatt gctgattgtt 3481 tcaagttaat acgtaacaaa ttgacaaatc aaataagtga tcaaccatca ggtgagagga 3541 ccaaccagat cagttggatt tggagcgaag agcacggcga caacgagctg gagctgggcc 3601 acgacgagat actcgccgac gggctcatca agaagggcat caaggaggcg acacagctgg 3661 aggtggccat cggtgatggc atggagttca cgatacacgg cgacatgaag aacaacaagc 3721 cgaagaaatc caaatatcta aataacgcaa cggacgacga cactgccagc attaactcat 3781 atggtagcca taagaatcga ccattcaagg atgagagcca caagggcagc gccgagacga 3841 tggagggcga ggagaagcgg gacgccagca aggaggattt aggtatcgat gaggagctcg 3901 acgaggaggg cgaattggag gagggcccgc tcgacggcga tatcatcata catgccaacg 3961 atgaggatat actcgatgaa tatccagctg attgctgccc cgattcgtac tataagaaat 4021 ttccgatctt agccggtgat gatgactcgc cgttctggca aggatggggc aatttacgac 4081 tgaaaacttt tcaattaatt gaaaataaat attttgaaac agctgttatc actatgattt 4141 taatgagtag cttagctttg gcattagaag atgtacatct gccacaaaga cccatactgc 4201 aggatatttt atactatatg gacagaatat ttacggttat attcttcttg gaaatgttaa 4261 tcaagtggct ggcgctcggc ttcaaagtgt acttcacgaa cgcgtggtgc tggctcgatt 4321 tcgtcattgt catggtatcg cttatcaact tcgttgcttc acttgttgga gctggtggta 4381 ttcaagcctt caagactatg cgaacgttaa gagcactgag accactacgt gccatgtccc 4441 gtatgcaggg catgagggtc gtcgttaatg cgctggtaca agctataccg tccatcttca 4501 atgtgctatt ggtgtgtcta atattttggc taatttttgc cataatgggt gtacagcttt 4561 ttgctggaaa atattttaag tgcgaggaca tgaatggcac gaagctcagc cacgagatca 4621 taccaaatcg caatgcctgc gaaagcgaga actacacgtg ggtgaattca gcaatgaatt 4681 tcgatcatgt aggtaacgcg tatctgtgcc ttttccaagt ggccaccttc aaaggctgga 4741 tacaaatcat gaacgatgct atcgattcac gagaggtgga caagcagcca attcgtgaaa 4801 cgaacatcta catgtattta tatttcgtat tcttcatcat atttggatca tttttcacac 4861 tcaatctgtt cattggtgtt atcattgata attttaatga gcaaaagaaa aaagcaggtg 4921 gatcattaga aatgttcatg acagaagatc agaaaaagta ctataatgct atgaaaaaga 4981 tgggctctaa aaaaccatta aaagccattc caagaccaag gtggcgtcca caagcaatag 5041 tctttgaaat agtaaccgat aagaaattcg atatagtcat aatgttattc attggtctga 5101 acatgttcac catgacactc gatcgttacg atgcgtcgga cacgtacaac gcggtccttg 5161 actatctcaa tgcgatattc gtagttattt tcagttccga atgtctatta aaaatattcg 5221 ctttacgata tcactatttt attgagccat ggaatttatt tgatgtagta gttgtcattt 5281 tatccatctt aggtctcgta cttagcgata ttatcgagaa atacttcgta tcgccgacac 5341 tgctccgagt ggtgcgcgtg gccaaagtgg gtcgcgtact gcgtctggtg aagggcgcca 5401 agggtatacg aacgctgctg ttcgccctgg ccatgtcgct gccggcgctg ttcaacatct 5461 gcctgctgct gttcctggtc atgttcatct tcgcgatatt cggcatgtcg ttcttcatgc 5521 atgtgaagga gaagagcggc atcaacgacg tctacaactt caagacgttc ggacagagca 5581 tgatcctgct ctttcagatg tctacctcag ccggttggga tggtgtactc gacgccatta 5641 tcaatgagga agcatgcgat ccacccgaca acgacaaagg ctatccgggc aattgtggtt 5701 cagcgaccgt tggaataacg tttctcctct catacctagt tataagcttt ttgatagtta 5761 ttaatatgta cattgctgtc attctcgaga actatagtca ggccaccgag gatgtgcagg 5821 agggtctcac cgacgacgat tacgatatgt actatgagat ctggcaacag ttcgatccgg 5881 agggcaccca gtacatacga tacgaccagc tgtccgagtt cctcgacgtg ctggagcccc 5941 cgctccagat tcacaagccc aacaagtaca aaatcatatc gatggacata cccatctgtc 6001 gcggtgacct catgtactgt gtggacatac tggacgcact gaccaaagac tttttcgcgc 6061 gcaaaggcaa tcccattgag gagacgggcg agattggtga gattgccgcc aggccggaca 6121 ccgagggcta cgagcccgtc tcctccaccc tctggcgaca gcgggaggag tactgtgccc 6181 gcctcattca acatgcctgg cgcaagcata aaacgcgcgc cgagggcggt ggtgcaccgt 6241 ccgacgcgga aggcgacggc cccgaagatg gtgatgcggg tggcggtggc ggggcggcgc 6301 tgatgctggg tgttctggat gttccagatg ctgctggcga tgcagcaacc actggctccc 6361 atgacggggc aacggcactc gatcccgaga ccgatccatc gggagtaccg gcggcagcgg 6421 cggtggcccc acagccagcc ggtgacggcg gcgagggacc ggatggagga gcaacagccg 6481 atccgcacga gagcaatgta aatagtccga cgatggacgg cgcgacggcg ggcagcccgg 6541 gcgcagggag cgctggcagc actggccgac agacggccgt tctcgtggag agcgatgggt 6601 ttgtgaccaa gaacgggcac aaggttgtaa tacactcgcg ttcgccgagc ataacgtcgc 6661 gcacggcgga tgtctgagcc aggcctcgcc cccccctcca agatgcacgc gagtattagg 6721 tgcaggtgca gatgcagtgc agtggtggtg ccacaacaac aacaacaaca acagcaggtg 6781 ccactggtag ctgcaattgc aactgcaaca gcagcaacag gaagaa