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LOCUS XM_022361497 6829 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X15, mRNA. ACCESSION XM_022361497 VERSION XM_022361497.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022361497.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6829 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6829 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 47 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6680 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X15" /protein_id="XP_022217189.2" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL EDIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFII TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDD GISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE KGNDDNNKEKMSIRSVEVESESTSLSLPGSPFNIRRGSRSSHKYTIRNGRGRFGIPGS DRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSHQSR ISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTCLDPNHKVEHRDF EIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRGVS VYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEWISLIVFDPFVEL FITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMKLCAMSPKYYFQE GWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGRTMG ALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFTDFMHSFMIVFRV LCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPTAD NDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSGERTNQISWIWSEE HGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNN ATMIGNSINHQDNRLEHELNHRGLSLQDDDTASINSYGSHKNRPFKDESHKGSAETME GEEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDEYPADCCPDSYYKK FPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLPQRP ILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVASLV GAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFA IMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYLCLF QVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGVIID NFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIVTDK KFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALRYHY FIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIR TLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQSMI LLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISFLIV INMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFLDVL EPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGNPIEETGEIGEIA ARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSDAEGDGPEDGDAG GGGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAAAAVAPQPAGDGGE GPDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVESDGFVTKNGHKVV IHSRSPSITSRTADV" misc_feature 690..1544 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1827..2384 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2613..3248 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3324..4097 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4107..4922 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4890..5048 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4935..4946 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5070..5822 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5853..5996 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gaggtgccgc aatatggtcg caagaaaaaa caaaaagaaa 421 tccgatatga tgacgaggac gaggatgaag gtccacaacc ggatcctaca cttgaacagg 481 gtgtgccaat acctgttcga ctgcagggca gcttccctcc ggaattggcc tccactcccc 541 tcgaggatat cgatcccttc tacagcaata tactgacatt cgtagttgta agcaaaggaa 601 aagatatttt tcgcttttct gcatcaaaag caatgtggct gctcgatcca ttcaatccga 661 tacgtcgtgt ggccatttac attttagtgc atccactatt ttcgttattc atcattacca 721 caattctcgt caactgcatc ctgatgataa tgccgacaac gcccacagtt gagtccactg 781 aggtgatatt caccggaatc tacacatttg aatcagctgt taaagtgatg gcacgaggtt 841 tcattttatg cccgtttacg tatcttagag atgcatggaa ttggctggac ttcgtagtaa 901 tagctttagc ttatgtgacc atgggtatag atttaggtaa tcttgcagcc ttgcgaacgt 961 ttagggtgct gcgagcgctt aaaaccgtag ccattgtgcc aggcttgaag accattgtcg 1021 gtgcggtcat cgaatctgta aagaatctgc gcgatgtgat aattttgaca atgttctccc 1081 tgtcggtgtt cgcgctgatg gggctgcaaa tctacatggg cgtgctaacg cagaagtgca 1141 tcaagaagtt cccgctggac ggctcctggg gcaacctgac cgacgagaac tgggcctatc 1201 acaatagcaa caactctaat tggtattcgg aagacgacgg tatatccttt ccgttgtgcg 1261 gtaatatctc tggagcgggg caatgtgaag acgattacgt gtgtctgcag gggttcgggc 1321 cgaacccgaa ctatggctac accagtttcg attcgttcgg ttgggcgttt ctgtccgcct 1381 tccggctgat gacgcaggac ttctgggagg atctgtatca gctggtgttg cgtgccgcag 1441 gaccctggca catgctgttc tttatagtca tcatcttcct aggttcattc tatcttgtga 1501 atttgatttt ggccattgtt gccatgtcgt atgacgaatt gcaaaagaag gccgaagaag 1561 aagaggctgc cgaagaggag gcgatacgtg aagccgagga agctgccgcc gccaaagcag 1621 ccaagctgga ggagcgcgcc aatgcgcagg cccaggccgc cgccgatgca gctgccgccg 1681 aagaggcggc tcttcatccg gagatggcca agagtccgac gtattcgtgc atcagctatg 1741 agctatttgt gggcggcgag aaaggcaacg atgacaacaa caaggagaag atgtccatac 1801 gcagcgttga ggtggagtcg gagtcgacat ccttatcctt acctggttca ccgtttaaca 1861 tacgcagggg atcacgtagt tctcacaagt acacgatccg gaatggacgt ggacgctttg 1921 gtatacccgg cagcgatcgc aagccgttgg tattgtcaac atatcaggat gctcagcagc 1981 acttgcccta tgccgatgat tcgaacgctg ttacgcccat gtccgaggag aacggtgcca 2041 ttatagtgcc cgtttattat ggaaatctag gctccaggca ttcatcgtat acttcgcatc 2101 agtccagaat atcgtatacc tcacatggcg atctattggg cggcatggcc gtcatgggcg 2161 tcagcacaat gaccaaggag agcaaattgc gaaatcgcaa ctcacgcaat caatcagtgg 2221 gcgccaccaa tggcggcacc acctgcctgg accccaatca caaggtcgag catcgcgact 2281 tcgaaatcgg tctggagtgc acggacgaag ctggcaagat taaacatcat gacaatcctt 2341 ttatcgagcc cgtccagaca caaacggtag tcgacatgaa agatgtgatg gtactgaatg 2401 acattatcga acaggccgct ggtcggcaca gtcgggctag tgatcgcggt gtctccgttt 2461 actatttccc aacagaggac gatgatgagg atgggccgac attaaaagac aaggccctcg 2521 aagcgctaat gaaaggcatc gaagtgtttt gtgtgtggga ctgttgctgg gtttggttga 2581 aattgcagga gtggatatcg ctgatcgtct tcgatccctt tgtcgagctc ttcatcacgc 2641 tgtgcattgt ggtcaacacg atgttcatgg ccatggacca tcacgacatg aacaaggaga 2701 tggaacgcat ccttaagtgc ggaaattatt tcttcacggc aacattcgcc attgaggcaa 2761 ccatgaaact gtgcgccatg agccccaaat actatttcca ggagggctgg aacatctttg 2821 acttcatcat tgtggcactc tcattgctgg agctgggcct cgagggcgtt cagggcctct 2881 ccgtcttgcg ttcgtttcgt ttgctgcgtg tattcaaatt ggccaagtcc tggccaacac 2941 ttaatttact catttcgatt atgggacgca ccatgggcgc tttgggtaat ctgacatttg 3001 tactttgcat tatcatcttc atctttgcgg tgatgggaat gcaactgttc ggaaagaatt 3061 atcatgataa caaggatcgc ttcccggacg gtgacctgcc ccgctggaac ttcaccgact 3121 tcatgcacag cttcatgatc gtgtttcggg tgctatgcgg cgagtggatc gagtccatgt 3181 gggactgtat gcacgtgggc gatgtatcgt gcattccatt cttcttggcc accgttgtca 3241 tcggcaattt agtggttctt aaccttttct tagccctgct tttgtcaaat tttggttcat 3301 ctagcttatc agcgccgaca gccgataacg ataccaataa aatagccgag gccttcaatc 3361 gaattgggcg atttaaaagt tgggttaagc gtaatattgc tgattgtttc aagttaatac 3421 gtaacaaatt gacaaatcaa ataagtgatc aaccatcagg tgagaggacc aaccagatca 3481 gttggatttg gagcgaagag cacggcgaca acgagctgga gctgggccac gacgagatac 3541 tcgccgacgg gctcatcaag aagggcatca aggaggcgac acagctggag gtggccatcg 3601 gtgatggcat ggagttcacg atacacggcg acatgaagaa caacaagccg aagaaatcca 3661 aatatctaaa taacgcaacg atgattggca actcaattaa ccaccaagac aatagactgg 3721 aacacgagct aaaccataga ggtttgtcct tacaggacga cgacactgcc agcattaact 3781 catatggtag ccataagaat cgaccattca aggatgagag ccacaagggc agcgccgaga 3841 cgatggaggg cgaggagaag cgggacgcca gcaaggagga tttaggtatc gatgaggagc 3901 tcgacgagga gggcgaattg gaggagggcc cgctcgacgg cgatatcatc atacatgcca 3961 acgatgagga tatactcgat gaatatccag ctgattgctg ccccgattcg tactataaga 4021 aatttccgat cttagccggt gatgatgact cgccgttctg gcaaggatgg ggcaatttac 4081 gactgaaaac ttttcaatta attgaaaata aatattttga aacagctgtt atcactatga 4141 ttttaatgag tagcttagct ttggcattag aagatgtaca tctgccacaa agacccatac 4201 tgcaggatat tttatactat atggacagaa tatttacggt tatattcttc ttggaaatgt 4261 taatcaagtg gctggcgctc ggcttcaaag tgtacttcac gaacgcgtgg tgctggctcg 4321 atttcgtcat tgtcatggta tcgcttatca acttcgttgc ttcacttgtt ggagctggtg 4381 gtattcaagc cttcaagact atgcgaacgt taagagcact gagaccacta cgtgccatgt 4441 cccgtatgca gggcatgagg gtcgtcgtta atgcgctggt acaagctata ccgtccatct 4501 tcaatgtgct attggtgtgt ctaatatttt ggctaatttt tgccataatg ggtgtacagc 4561 tttttgctgg aaaatatttt aagtgcgagg acatgaatgg cacgaagctc agccacgaga 4621 tcataccaaa tcgcaatgcc tgcgaaagcg agaactacac gtgggtgaat tcagcaatga 4681 atttcgatca tgtaggtaac gcgtatctgt gccttttcca agtggccacc ttcaaaggct 4741 ggatacaaat catgaacgat gctatcgatt cacgagaggt ggacaagcag ccaattcgtg 4801 aaacgaacat ctacatgtat ttatatttcg tattcttcat catatttgga tcatttttca 4861 cactcaatct gttcattggt gttatcattg ataattttaa tgagcaaaag aaaaaagcag 4921 gtggatcatt agaaatgttc atgacagaag atcagaaaaa gtactataat gctatgaaaa 4981 agatgggctc taaaaaacca ttaaaagcca ttccaagacc aaggtggcgt ccacaagcaa 5041 tagtctttga aatagtaacc gataagaaat tcgatatagt cataatgtta ttcattggtc 5101 tgaacatgtt caccatgaca ctcgatcgtt acgatgcgtc ggacacgtac aacgcggtcc 5161 ttgactatct caatgcgata ttcgtagtta ttttcagttc cgaatgtcta ttaaaaatat 5221 tcgctttacg atatcactat tttattgagc catggaattt atttgatgta gtagttgtca 5281 ttttatccat cttaggtctc gtacttagcg atattatcga gaaatacttc gtatcgccga 5341 cactgctccg agtggtgcgc gtggccaaag tgggtcgcgt actgcgtctg gtgaagggcg 5401 ccaagggtat acgaacgctg ctgttcgccc tggccatgtc gctgccggcg ctgttcaaca 5461 tctgcctgct gctgttcctg gtcatgttca tcttcgcgat attcggcatg tcgttcttca 5521 tgcatgtgaa ggagaagagc ggcatcaacg acgtctacaa cttcaagacg ttcggacaga 5581 gcatgatcct gctctttcag atgtctacct cagccggttg ggatggtgta ctcgacgcca 5641 ttatcaatga ggaagcatgc gatccacccg acaacgacaa aggctatccg ggcaattgtg 5701 gttcagcgac cgttggaata acgtttctcc tctcatacct agttataagc tttttgatag 5761 ttattaatat gtacattgct gtcattctcg agaactatag tcaggccacc gaggatgtgc 5821 aggagggtct caccgacgac gattacgata tgtactatga gatctggcaa cagttcgatc 5881 cggagggcac ccagtacata cgatacgacc agctgtccga gttcctcgac gtgctggagc 5941 ccccgctcca gattcacaag cccaacaagt acaaaatcat atcgatggac atacccatct 6001 gtcgcggtga cctcatgtac tgtgtggaca tactggacgc actgaccaaa gactttttcg 6061 cgcgcaaagg caatcccatt gaggagacgg gcgagattgg tgagattgcc gccaggccgg 6121 acaccgaggg ctacgagccc gtctcctcca ccctctggcg acagcgggag gagtactgtg 6181 cccgcctcat tcaacatgcc tggcgcaagc ataaaacgcg cgccgagggc ggtggtgcac 6241 cgtccgacgc ggaaggcgac ggccccgaag atggtgatgc gggtggcggt ggcggggcgg 6301 cgctgatgct gggtgttctg gatgttccag atgctgctgg cgatgcagca accactggct 6361 cccatgacgg ggcaacggca ctcgatcccg agaccgatcc atcgggagta ccggcggcag 6421 cggcggtggc cccacagcca gccggtgacg gcggcgaggg accggatgga ggagcaacag 6481 ccgatccgca cgagagcaat gtaaatagtc cgacgatgga cggcgcgacg gcgggcagcc 6541 cgggcgcagg gagcgctggc agcactggcc gacagacggc cgttctcgtg gagagcgatg 6601 ggtttgtgac caagaacggg cacaaggttg taatacactc gcgttcgccg agcataacgt 6661 cgcgcacggc ggatgtctga gccaggcctc gcccccccct ccaagatgca cgcgagtatt 6721 aggtgcaggt gcagatgcag tgcagtggtg gtgccacaac aacaacaaca acaacagcag 6781 gtgccactgg tagctgcaat tgcaactgca acagcagcaa caggaagaa