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LOCUS XM_022361494 6838 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X12, mRNA. ACCESSION XM_022361494 VERSION XM_022361494.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022361494.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6838 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6838 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 46 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6689 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X12" /protein_id="XP_022217186.2" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL EDIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFII TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDD GISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE KGNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTYTIRNGRGRFGI PGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSH QSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTCLDPNHKVEH RDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDR GVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEWISLIVFDPF VELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMKLCAMSPKYY FQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGR TMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFTDFMHSFMIV FRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAP TADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSGERTNQISWIW SEEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNNKPKKSKY LNNATMIGNSINHQDNRLEHELNHRGLSLQDDDTASINSYGSHKNRPFKDESHKGSAE TMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDEYPADCCPDSY YKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLALALEDVHLP QRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMVSLINFVA SLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWL IFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFDHVGNAYL CLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFTLNLFIGV IIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQAIVFEIV TDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECLLKIFALR YHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVLRLVKGAK GIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVYNFKTFGQ SMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLLSYLVISF LIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRYDQLSEFL DVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGNPIEETGEIG EIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSDAEGDGPEDG DAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAAAAVAPQPAGD GGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVESDGFVTKNGH KVVIHSRSPSITSRTADV" misc_feature 690..1544 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1893..2393 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2622..3257 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3333..4106 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4116..4931 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4899..5057 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4944..4955 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5079..5831 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5862..6005 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gaggtgccgc aatatggtcg caagaaaaaa caaaaagaaa 421 tccgatatga tgacgaggac gaggatgaag gtccacaacc ggatcctaca cttgaacagg 481 gtgtgccaat acctgttcga ctgcagggca gcttccctcc ggaattggcc tccactcccc 541 tcgaggatat cgatcccttc tacagcaata tactgacatt cgtagttgta agcaaaggaa 601 aagatatttt tcgcttttct gcatcaaaag caatgtggct gctcgatcca ttcaatccga 661 tacgtcgtgt ggccatttac attttagtgc atccactatt ttcgttattc atcattacca 721 caattctcgt caactgcatc ctgatgataa tgccgacaac gcccacagtt gagtccactg 781 aggtgatatt caccggaatc tacacatttg aatcagctgt taaagtgatg gcacgaggtt 841 tcattttatg cccgtttacg tatcttagag atgcatggaa ttggctggac ttcgtagtaa 901 tagctttagc ttatgtgacc atgggtatag atttaggtaa tcttgcagcc ttgcgaacgt 961 ttagggtgct gcgagcgctt aaaaccgtag ccattgtgcc aggcttgaag accattgtcg 1021 gtgcggtcat cgaatctgta aagaatctgc gcgatgtgat aattttgaca atgttctccc 1081 tgtcggtgtt cgcgctgatg gggctgcaaa tctacatggg cgtgctaacg cagaagtgca 1141 tcaagaagtt cccgctggac ggctcctggg gcaacctgac cgacgagaac tgggcctatc 1201 acaatagcaa caactctaat tggtattcgg aagacgacgg tatatccttt ccgttgtgcg 1261 gtaatatctc tggagcgggg caatgtgaag acgattacgt gtgtctgcag gggttcgggc 1321 cgaacccgaa ctatggctac accagtttcg attcgttcgg ttgggcgttt ctgtccgcct 1381 tccggctgat gacgcaggac ttctgggagg atctgtatca gctggtgttg cgtgccgcag 1441 gaccctggca catgctgttc tttatagtca tcatcttcct aggttcattc tatcttgtga 1501 atttgatttt ggccattgtt gccatgtcgt atgacgaatt gcaaaagaag gccgaagaag 1561 aagaggctgc cgaagaggag gcgatacgtg aagccgagga agctgccgcc gccaaagcag 1621 ccaagctgga ggagcgcgcc aatgcgcagg cccaggccgc cgccgatgca gctgccgccg 1681 aagaggcggc tcttcatccg gagatggcca agagtccgac gtattcgtgc atcagctatg 1741 agctatttgt gggcggcgag aaaggcaacg atgacaacaa caaggagaag atgtccatac 1801 gcagcgttga ggtggagtcg gagtcggtga gcgttataca aagacaacca gcacctacca 1861 cagcacacca agctaccaaa gttcgtaaag tgagcacgta cacgatccgg aatggacgtg 1921 gacgctttgg tatacccggc agcgatcgca agccgttggt attgtcaaca tatcaggatg 1981 ctcagcagca cttgccctat gccgatgatt cgaacgctgt tacgcccatg tccgaggaga 2041 acggtgccat tatagtgccc gtttattatg gaaatctagg ctccaggcat tcatcgtata 2101 cttcgcatca gtccagaata tcgtatacct cacatggcga tctattgggc ggcatggccg 2161 tcatgggcgt cagcacaatg accaaggaga gcaaattgcg aaatcgcaac tcacgcaatc 2221 aatcagtggg cgccaccaat ggcggcacca cctgcctgga ccccaatcac aaggtcgagc 2281 atcgcgactt cgaaatcggt ctggagtgca cggacgaagc tggcaagatt aaacatcatg 2341 acaatccttt tatcgagccc gtccagacac aaacggtagt cgacatgaaa gatgtgatgg 2401 tactgaatga cattatcgaa caggccgctg gtcggcacag tcgggctagt gatcgcggtg 2461 tctccgttta ctatttccca acagaggacg atgatgagga tgggccgaca ttaaaagaca 2521 aggccctcga agcgctaatg aaaggcatcg aagtgttttg tgtgtgggac tgttgctggg 2581 tttggttgaa attgcaggag tggatatcgc tgatcgtctt cgatcccttt gtcgagctct 2641 tcatcacgct gtgcattgtg gtcaacacga tgttcatggc catggaccat cacgacatga 2701 acaaggagat ggaacgcatc cttaagtgcg gaaattattt cttcacggca acattcgcca 2761 ttgaggcaac catgaaactg tgcgccatga gccccaaata ctatttccag gagggctgga 2821 acatctttga cttcatcatt gtggcactct cattgctgga gctgggcctc gagggcgttc 2881 agggcctctc cgtcttgcgt tcgtttcgtt tgctgcgtgt attcaaattg gccaagtcct 2941 ggccaacact taatttactc atttcgatta tgggacgcac catgggcgct ttgggtaatc 3001 tgacatttgt actttgcatt atcatcttca tctttgcggt gatgggaatg caactgttcg 3061 gaaagaatta tcatgataac aaggatcgct tcccggacgg tgacctgccc cgctggaact 3121 tcaccgactt catgcacagc ttcatgatcg tgtttcgggt gctatgcggc gagtggatcg 3181 agtccatgtg ggactgtatg cacgtgggcg atgtatcgtg cattccattc ttcttggcca 3241 ccgttgtcat cggcaattta gtggttctta accttttctt agccctgctt ttgtcaaatt 3301 ttggttcatc tagcttatca gcgccgacag ccgataacga taccaataaa atagccgagg 3361 ccttcaatcg aattgggcga tttaaaagtt gggttaagcg taatattgct gattgtttca 3421 agttaatacg taacaaattg acaaatcaaa taagtgatca accatcaggt gagaggacca 3481 accagatcag ttggatttgg agcgaagagc acggcgacaa cgagctggag ctgggccacg 3541 acgagatact cgccgacggg ctcatcaaga agggcatcaa ggaggcgaca cagctggagg 3601 tggccatcgg tgatggcatg gagttcacga tacacggcga catgaagaac aacaagccga 3661 agaaatccaa atatctaaat aacgcaacga tgattggcaa ctcaattaac caccaagaca 3721 atagactgga acacgagcta aaccatagag gtttgtcctt acaggacgac gacactgcca 3781 gcattaactc atatggtagc cataagaatc gaccattcaa ggatgagagc cacaagggca 3841 gcgccgagac gatggagggc gaggagaagc gggacgccag caaggaggat ttaggtatcg 3901 atgaggagct cgacgaggag ggcgaattgg aggagggccc gctcgacggc gatatcatca 3961 tacatgccaa cgatgaggat atactcgatg aatatccagc tgattgctgc cccgattcgt 4021 actataagaa atttccgatc ttagccggtg atgatgactc gccgttctgg caaggatggg 4081 gcaatttacg actgaaaact tttcaattaa ttgaaaataa atattttgaa acagctgtta 4141 tcactatgat tttaatgagt agcttagctt tggcattaga agatgtacat ctgccacaaa 4201 gacccatact gcaggatatt ttatactata tggacagaat atttacggtt atattcttct 4261 tggaaatgtt aatcaagtgg ctggcgctcg gcttcaaagt gtacttcacg aacgcgtggt 4321 gctggctcga tttcgtcatt gtcatggtat cgcttatcaa cttcgttgct tcacttgttg 4381 gagctggtgg tattcaagcc ttcaagacta tgcgaacgtt aagagcactg agaccactac 4441 gtgccatgtc ccgtatgcag ggcatgaggg tcgtcgttaa tgcgctggta caagctatac 4501 cgtccatctt caatgtgcta ttggtgtgtc taatattttg gctaattttt gccataatgg 4561 gtgtacagct ttttgctgga aaatatttta agtgcgagga catgaatggc acgaagctca 4621 gccacgagat cataccaaat cgcaatgcct gcgaaagcga gaactacacg tgggtgaatt 4681 cagcaatgaa tttcgatcat gtaggtaacg cgtatctgtg ccttttccaa gtggccacct 4741 tcaaaggctg gatacaaatc atgaacgatg ctatcgattc acgagaggtg gacaagcagc 4801 caattcgtga aacgaacatc tacatgtatt tatatttcgt attcttcatc atatttggat 4861 catttttcac actcaatctg ttcattggtg ttatcattga taattttaat gagcaaaaga 4921 aaaaagcagg tggatcatta gaaatgttca tgacagaaga tcagaaaaag tactataatg 4981 ctatgaaaaa gatgggctct aaaaaaccat taaaagccat tccaagacca aggtggcgtc 5041 cacaagcaat agtctttgaa atagtaaccg ataagaaatt cgatatagtc ataatgttat 5101 tcattggtct gaacatgttc accatgacac tcgatcgtta cgatgcgtcg gacacgtaca 5161 acgcggtcct tgactatctc aatgcgatat tcgtagttat tttcagttcc gaatgtctat 5221 taaaaatatt cgctttacga tatcactatt ttattgagcc atggaattta tttgatgtag 5281 tagttgtcat tttatccatc ttaggtctcg tacttagcga tattatcgag aaatacttcg 5341 tatcgccgac actgctccga gtggtgcgcg tggccaaagt gggtcgcgta ctgcgtctgg 5401 tgaagggcgc caagggtata cgaacgctgc tgttcgccct ggccatgtcg ctgccggcgc 5461 tgttcaacat ctgcctgctg ctgttcctgg tcatgttcat cttcgcgata ttcggcatgt 5521 cgttcttcat gcatgtgaag gagaagagcg gcatcaacga cgtctacaac ttcaagacgt 5581 tcggacagag catgatcctg ctctttcaga tgtctacctc agccggttgg gatggtgtac 5641 tcgacgccat tatcaatgag gaagcatgcg atccacccga caacgacaaa ggctatccgg 5701 gcaattgtgg ttcagcgacc gttggaataa cgtttctcct ctcataccta gttataagct 5761 ttttgatagt tattaatatg tacattgctg tcattctcga gaactatagt caggccaccg 5821 aggatgtgca ggagggtctc accgacgacg attacgatat gtactatgag atctggcaac 5881 agttcgatcc ggagggcacc cagtacatac gatacgacca gctgtccgag ttcctcgacg 5941 tgctggagcc cccgctccag attcacaagc ccaacaagta caaaatcata tcgatggaca 6001 tacccatctg tcgcggtgac ctcatgtact gtgtggacat actggacgca ctgaccaaag 6061 actttttcgc gcgcaaaggc aatcccattg aggagacggg cgagattggt gagattgccg 6121 ccaggccgga caccgagggc tacgagcccg tctcctccac cctctggcga cagcgggagg 6181 agtactgtgc ccgcctcatt caacatgcct ggcgcaagca taaaacgcgc gccgagggcg 6241 gtggtgcacc gtccgacgcg gaaggcgacg gccccgaaga tggtgatgcg ggtggcggtg 6301 gcggggcggc gctgatgctg ggtgttctgg atgttccaga tgctgctggc gatgcagcaa 6361 ccactggctc ccatgacggg gcaacggcac tcgatcccga gaccgatcca tcgggagtac 6421 cggcggcagc ggcggtggcc ccacagccag ccggtgacgg cggcgaggga ccggatggag 6481 gagcaacagc cgatccgcac gagagcaatg taaatagtcc gacgatggac ggcgcgacgg 6541 cgggcagccc gggcgcaggg agcgctggca gcactggccg acagacggcc gttctcgtgg 6601 agagcgatgg gtttgtgacc aagaacgggc acaaggttgt aatacactcg cgttcgccga 6661 gcataacgtc gcgcacggcg gatgtctgag ccaggcctcg cccccccctc caagatgcac 6721 gcgagtatta ggtgcaggtg cagatgcagt gcagtggtgg tgccacaaca acaacaacaa 6781 caacagcagg tgccactggt agctgcaatt gcaactgcaa cagcagcaac aggaagaa