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LOCUS XM_022361493 6859 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X11, mRNA. ACCESSION XM_022361493 VERSION XM_022361493.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022361493.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6859 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6859 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 45 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6710 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X11" /protein_id="XP_022217185.2" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLEDIDPFYSNIL TFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMI MPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDFVVIALAYVTM GIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFAL MGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDGISFPLCGNIS GAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRAAGP WHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIREAEEAAAAKA AKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEKGNDDNNKEKM SIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNIRRGSRSSHKYT IRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNL GSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTT CLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQA AGRHSRASDRGVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQE WISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATM KLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPT LNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNF TDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLS NFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSG KGVCRCISAEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKNN KPKKSKYLNNATMIGNSINHQDNRLEHELNHRGLSLQDDDTASINSYGSHKNRPFKDE SHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDEYPA DCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLALA LEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVMV SLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLL VCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNFD HVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFFT LNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRPQ AIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSECL LKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRVL RLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDVY NFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFLL SYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIRY DQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGNPI EETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSDAE GDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAAAAV APQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVESDG FVTKNGHKVVIHSRSPSITSRTADV" misc_feature 657..1511 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1866..2423 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2652..3287 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3363..4127 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4137..4952 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4920..5078 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4965..4976 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5100..5852 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5883..6026 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gaggtgatcc gatatgatga cgaggacgag gatgaaggtc 421 cacaaccgga tcctacactt gaacagggtg tgccaatacc tgttcgactg cagggcagct 481 tccctccgga attggcctcc actcccctcg aggatatcga tcccttctac agcaatatac 541 tgacattcgt agttgtaagc aaaggaaaag atatttttcg cttttctgca tcaaaagcaa 601 tgtggctgct cgatccattc aatccgatac gtcgtgtggc catttacatt ttagtgcatc 661 cactattttc gttattcatc attaccacaa ttctcgtcaa ctgcatcctg atgataatgc 721 cgacaacgcc cacagttgag tccactgagg tgatattcac cggaatctac acatttgaat 781 cagctgttaa agtgatggca cgaggtttca ttttatgccc gtttacgtat cttagagatg 841 catggaattg gctggacttc gtagtaatag ctttagctta tgtgaccatg ggtatagatt 901 taggtaatct tgcagccttg cgaacgttta gggtgctgcg agcgcttaaa accgtagcca 961 ttgtgccagg cttgaagacc attgtcggtg cggtcatcga atctgtaaag aatctgcgcg 1021 atgtgataat tttgacaatg ttctccctgt cggtgttcgc gctgatgggg ctgcaaatct 1081 acatgggcgt gctaacgcag aagtgcatca agaagttccc gctggacggc tcctggggca 1141 acctgaccga cgagaactgg gcctatcaca atagcaacaa ctctaattgg tattcggaag 1201 acgacggtat atcctttccg ttgtgcggta atatctctgg agcggggcaa tgtgaagacg 1261 attacgtgtg tctgcagggg ttcgggccga acccgaacta tggctacacc agtttcgatt 1321 cgttcggttg ggcgtttctg tccgccttcc ggctgatgac gcaggacttc tgggaggatc 1381 tgtatcagct ggtgttgcgt gccgcaggac cctggcacat gctgttcttt atagtcatca 1441 tcttcctagg ttcattctat cttgtgaatt tgattttggc cattgttgcc atgtcgtatg 1501 acgaattgca aaagaaggcc gaagaagaag aggctgccga agaggaggcg atacgtgaag 1561 ccgaggaagc tgccgccgcc aaagcagcca agctggagga gcgcgccaat gcgcaggccc 1621 aggccgccgc cgatgcagct gccgccgaag aggcggctct tcatccggag atggccaaga 1681 gtccgacgta ttcgtgcatc agctatgagc tatttgtggg cggcgagaaa ggcaacgatg 1741 acaacaacaa ggagaagatg tccatacgca gcgttgaggt ggagtcggag tcggtgagcg 1801 ttatacaaag acaaccagca cctaccacag cacaccaagc taccaaagtt cgtaaagtga 1861 gcacgacatc cttatcctta cctggttcac cgtttaacat acgcagggga tcacgtagtt 1921 ctcacaagta cacgatccgg aatggacgtg gacgctttgg tatacccggc agcgatcgca 1981 agccgttggt attgtcaaca tatcaggatg ctcagcagca cttgccctat gccgatgatt 2041 cgaacgctgt tacgcccatg tccgaggaga acggtgccat tatagtgccc gtttattatg 2101 gaaatctagg ctccaggcat tcatcgtata cttcgcatca gtccagaata tcgtatacct 2161 cacatggcga tctattgggc ggcatggccg tcatgggcgt cagcacaatg accaaggaga 2221 gcaaattgcg aaatcgcaac tcacgcaatc aatcagtggg cgccaccaat ggcggcacca 2281 cctgcctgga ccccaatcac aaggtcgagc atcgcgactt cgaaatcggt ctggagtgca 2341 cggacgaagc tggcaagatt aaacatcatg acaatccttt tatcgagccc gtccagacac 2401 aaacggtagt cgacatgaaa gatgtgatgg tactgaatga cattatcgaa caggccgctg 2461 gtcggcacag tcgggctagt gatcgcggtg tctccgttta ctatttccca acagaggacg 2521 atgatgagga tgggccgaca ttaaaagaca aggccctcga agcgctaatg aaaggcatcg 2581 aagtgttttg tgtgtgggac tgttgctggg tttggttgaa attgcaggag tggatatcgc 2641 tgatcgtctt cgatcccttt gtcgagctct tcatcacgct gtgcattgtg gtcaacacga 2701 tgttcatggc catggaccat cacgacatga acaaggagat ggaacgcatc cttaagtgcg 2761 gaaattattt cttcacggca acattcgcca ttgaggcaac catgaaactg tgcgccatga 2821 gccccaaata ctatttccag gagggctgga acatctttga cttcatcatt gtggcactct 2881 cattgctgga gctgggcctc gagggcgttc agggcctctc cgtcttgcgt tcgtttcgtt 2941 tgctgcgtgt attcaaattg gccaagtcct ggccaacact taatttactc atttcgatta 3001 tgggacgcac catgggcgct ttgggtaatc tgacatttgt actttgcatt atcatcttca 3061 tctttgcggt gatgggaatg caactgttcg gaaagaatta tcatgataac aaggatcgct 3121 tcccggacgg tgacctgccc cgctggaact tcaccgactt catgcacagc ttcatgatcg 3181 tgtttcgggt gctatgcggc gagtggatcg agtccatgtg ggactgtatg cacgtgggcg 3241 atgtatcgtg cattccattc ttcttggcca ccgttgtcat cggcaattta gtggttctta 3301 accttttctt agccctgctt ttgtcaaatt ttggttcatc tagcttatca gcgccgacag 3361 ccgataacga taccaataaa atagccgagg ccttcaatcg aattgggcga tttaaaagtt 3421 gggttaagcg taatattgct gattgtttca agttaatacg taacaaattg acaaatcaaa 3481 taagtgatca accatcaggc aaaggcgttt gtcgttgtat atctgcagag cacggcgaca 3541 acgagctgga gctgggccac gacgagatac tcgccgacgg gctcatcaag aagggcatca 3601 aggaggcgac acagctggag gtggccatcg gtgatggcat ggagttcacg atacacggcg 3661 acatgaagaa caacaagccg aagaaatcca aatatctaaa taacgcaacg atgattggca 3721 actcaattaa ccaccaagac aatagactgg aacacgagct aaaccataga ggtttgtcct 3781 tacaggacga cgacactgcc agcattaact catatggtag ccataagaat cgaccattca 3841 aggatgagag ccacaagggc agcgccgaga cgatggaggg cgaggagaag cgggacgcca 3901 gcaaggagga tttaggtatc gatgaggagc tcgacgagga gggcgaattg gaggagggcc 3961 cgctcgacgg cgatatcatc atacatgcca acgatgagga tatactcgat gaatatccag 4021 ctgattgctg ccccgattcg tactataaga aatttccgat cttagccggt gatgatgact 4081 cgccgttctg gcaaggatgg ggcaatttac gactgaaaac ttttcaatta attgaaaata 4141 aatattttga aacagctgtt atcactatga ttttaatgag tagcttagct ttggcattag 4201 aagatgtaca tctgccacaa agacccatac tgcaggatat tttatactat atggacagaa 4261 tatttacggt tatattcttc ttggaaatgt taatcaagtg gctggcgctc ggcttcaaag 4321 tgtacttcac gaacgcgtgg tgctggctcg atttcgtcat tgtcatggta tcgcttatca 4381 acttcgttgc ttcacttgtt ggagctggtg gtattcaagc cttcaagact atgcgaacgt 4441 taagagcact gagaccacta cgtgccatgt cccgtatgca gggcatgagg gtcgtcgtta 4501 atgcgctggt acaagctata ccgtccatct tcaatgtgct attggtgtgt ctaatatttt 4561 ggctaatttt tgccataatg ggtgtacagc tttttgctgg aaaatatttt aagtgcgagg 4621 acatgaatgg cacgaagctc agccacgaga tcataccaaa tcgcaatgcc tgcgaaagcg 4681 agaactacac gtgggtgaat tcagcaatga atttcgatca tgtaggtaac gcgtatctgt 4741 gccttttcca agtggccacc ttcaaaggct ggatacaaat catgaacgat gctatcgatt 4801 cacgagaggt ggacaagcag ccaattcgtg aaacgaacat ctacatgtat ttatatttcg 4861 tattcttcat catatttgga tcatttttca cactcaatct gttcattggt gttatcattg 4921 ataattttaa tgagcaaaag aaaaaagcag gtggatcatt agaaatgttc atgacagaag 4981 atcagaaaaa gtactataat gctatgaaaa agatgggctc taaaaaacca ttaaaagcca 5041 ttccaagacc aaggtggcgt ccacaagcaa tagtctttga aatagtaacc gataagaaat 5101 tcgatatagt cataatgtta ttcattggtc tgaacatgtt caccatgaca ctcgatcgtt 5161 acgatgcgtc ggacacgtac aacgcggtcc ttgactatct caatgcgata ttcgtagtta 5221 ttttcagttc cgaatgtcta ttaaaaatat tcgctttacg atatcactat tttattgagc 5281 catggaattt atttgatgta gtagttgtca ttttatccat cttaggtctc gtacttagcg 5341 atattatcga gaaatacttc gtatcgccga cactgctccg agtggtgcgc gtggccaaag 5401 tgggtcgcgt actgcgtctg gtgaagggcg ccaagggtat acgaacgctg ctgttcgccc 5461 tggccatgtc gctgccggcg ctgttcaaca tctgcctgct gctgttcctg gtcatgttca 5521 tcttcgcgat attcggcatg tcgttcttca tgcatgtgaa ggagaagagc ggcatcaacg 5581 acgtctacaa cttcaagacg ttcggacaga gcatgatcct gctctttcag atgtctacct 5641 cagccggttg ggatggtgta ctcgacgcca ttatcaatga ggaagcatgc gatccacccg 5701 acaacgacaa aggctatccg ggcaattgtg gttcagcgac cgttggaata acgtttctcc 5761 tctcatacct agttataagc tttttgatag ttattaatat gtacattgct gtcattctcg 5821 agaactatag tcaggccacc gaggatgtgc aggagggtct caccgacgac gattacgata 5881 tgtactatga gatctggcaa cagttcgatc cggagggcac ccagtacata cgatacgacc 5941 agctgtccga gttcctcgac gtgctggagc ccccgctcca gattcacaag cccaacaagt 6001 acaaaatcat atcgatggac atacccatct gtcgcggtga cctcatgtac tgtgtggaca 6061 tactggacgc actgaccaaa gactttttcg cgcgcaaagg caatcccatt gaggagacgg 6121 gcgagattgg tgagattgcc gccaggccgg acaccgaggg ctacgagccc gtctcctcca 6181 ccctctggcg acagcgggag gagtactgtg cccgcctcat tcaacatgcc tggcgcaagc 6241 ataaaacgcg cgccgagggc ggtggtgcac cgtccgacgc ggaaggcgac ggccccgaag 6301 atggtgatgc gggtggcggt ggcggggcgg cgctgatgct gggtgttctg gatgttccag 6361 atgctgctgg cgatgcagca accactggct cccatgacgg ggcaacggca ctcgatcccg 6421 agaccgatcc atcgggagta ccggcggcag cggcggtggc cccacagcca gccggtgacg 6481 gcggcgaggg accggatgga ggagcaacag ccgatccgca cgagagcaat gtaaatagtc 6541 cgacgatgga cggcgcgacg gcgggcagcc cgggcgcagg gagcgctggc agcactggcc 6601 gacagacggc cgttctcgtg gagagcgatg ggtttgtgac caagaacggg cacaaggttg 6661 taatacactc gcgttcgccg agcataacgt cgcgcacggc ggatgtctga gccaggcctc 6721 gcccccccct ccaagatgca cgcgagtatt aggtgcaggt gcagatgcag tgcagtggtg 6781 gtgccacaac aacaacaaca acaacagcag gtgccactgg tagctgcaat tgcaactgca 6841 acagcagcaa caggaagaa