PREDICTED: Drosophila obscura sodium channel protein para
LOCUS XM_022361491 6862 bp mRNA linear INV 14-MAY-2021
(LOC111070739), transcript variant X9, mRNA.
ACCESSION XM_022361491
VERSION XM_022361491.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022361491.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6862
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..6862
/gene="LOC111070739"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 53 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 7 samples with support for all annotated
introns"
/db_xref="GeneID:111070739"
CDS 237..6713
/gene="LOC111070739"
/codon_start=1
/product="sodium channel protein para isoform X9"
/protein_id="XP_022217183.2"
/db_xref="GeneID:111070739"
/translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK
RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL
EDIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFII
TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD
FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII
LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDD
GISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED
LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI
REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE
KGNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNI
RRGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENG
AIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRN
QSVGATNGGTTCLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKD
VMVLNDIIEQAAGRHSRASDRGVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVW
DCCWVWLKLQEWISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYF
FTATFAIEATMKLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLL
RVFKLAKSWPTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDR
FPDGDLPRWNFTDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLV
VLNLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNK
LTNQISDQPSEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKN
NKPKKSKYLNNATMIGNSINHQDNRLEHELNHRGLSLQDDDTASINSYGSHKNRPFKD
ESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDEYP
ADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLAL
ALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVM
VSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVL
LVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNF
DHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFF
TLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRP
QAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSEC
LLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRV
LRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDV
YNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFL
LSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIR
YDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGNP
IEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSDA
EGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAAAA
VAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVESD
GFVTKNGHKVVIHSRSPSITSRTADV"
misc_feature 690..1544
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 1899..2456
/gene="LOC111070739"
/note="Cytoplasmic domain of voltage-gated Na+ ion
channel; Region: Na_trans_cytopl; pfam11933"
/db_xref="CDD:463401"
misc_feature 2685..3320
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 3396..4130
/gene="LOC111070739"
/note="Sodium ion transport-associated; Region:
Na_trans_assoc; pfam06512"
/db_xref="CDD:461936"
misc_feature 4140..4955
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 4923..5081
/gene="LOC111070739"
/note="Inactivation gate of the voltage-gated sodium
channel alpha subunits; Region: Na_channel_gate; cd13433"
/db_xref="CDD:240441"
misc_feature 4968..4979
/gene="LOC111070739"
/note="putative hydrophobic latch; other site"
/db_xref="CDD:240441"
misc_feature 5103..5855
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 5886..6029
/gene="LOC111070739"
/note="Voltage-dependent L-type calcium channel,
IQ-associated; Region: GPHH; pfam16905"
/db_xref="CDD:465306"
ORIGIN
1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca
61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg
121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac
181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga
241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg
301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg
361 aaagaaagag agccgaggga gaggtgccgc aatatggtcg caagaaaaaa caaaaagaaa
421 tccgatatga tgacgaggac gaggatgaag gtccacaacc ggatcctaca cttgaacagg
481 gtgtgccaat acctgttcga ctgcagggca gcttccctcc ggaattggcc tccactcccc
541 tcgaggatat cgatcccttc tacagcaata tactgacatt cgtagttgta agcaaaggaa
601 aagatatttt tcgcttttct gcatcaaaag caatgtggct gctcgatcca ttcaatccga
661 tacgtcgtgt ggccatttac attttagtgc atccactatt ttcgttattc atcattacca
721 caattctcgt caactgcatc ctgatgataa tgccgacaac gcccacagtt gagtccactg
781 aggtgatatt caccggaatc tacacatttg aatcagctgt taaagtgatg gcacgaggtt
841 tcattttatg cccgtttacg tatcttagag atgcatggaa ttggctggac ttcgtagtaa
901 tagctttagc ttatgtgacc atgggtatag atttaggtaa tcttgcagcc ttgcgaacgt
961 ttagggtgct gcgagcgctt aaaaccgtag ccattgtgcc aggcttgaag accattgtcg
1021 gtgcggtcat cgaatctgta aagaatctgc gcgatgtgat aattttgaca atgttctccc
1081 tgtcggtgtt cgcgctgatg gggctgcaaa tctacatggg cgtgctaacg cagaagtgca
1141 tcaagaagtt cccgctggac ggctcctggg gcaacctgac cgacgagaac tgggcctatc
1201 acaatagcaa caactctaat tggtattcgg aagacgacgg tatatccttt ccgttgtgcg
1261 gtaatatctc tggagcgggg caatgtgaag acgattacgt gtgtctgcag gggttcgggc
1321 cgaacccgaa ctatggctac accagtttcg attcgttcgg ttgggcgttt ctgtccgcct
1381 tccggctgat gacgcaggac ttctgggagg atctgtatca gctggtgttg cgtgccgcag
1441 gaccctggca catgctgttc tttatagtca tcatcttcct aggttcattc tatcttgtga
1501 atttgatttt ggccattgtt gccatgtcgt atgacgaatt gcaaaagaag gccgaagaag
1561 aagaggctgc cgaagaggag gcgatacgtg aagccgagga agctgccgcc gccaaagcag
1621 ccaagctgga ggagcgcgcc aatgcgcagg cccaggccgc cgccgatgca gctgccgccg
1681 aagaggcggc tcttcatccg gagatggcca agagtccgac gtattcgtgc atcagctatg
1741 agctatttgt gggcggcgag aaaggcaacg atgacaacaa caaggagaag atgtccatac
1801 gcagcgttga ggtggagtcg gagtcggtga gcgttataca aagacaacca gcacctacca
1861 cagcacacca agctaccaaa gttcgtaaag tgagcacgac atccttatcc ttacctggtt
1921 caccgtttaa catacgcagg ggatcacgta gttctcacaa gtacacgatc cggaatggac
1981 gtggacgctt tggtataccc ggcagcgatc gcaagccgtt ggtattgtca acatatcagg
2041 atgctcagca gcacttgccc tatgccgatg attcgaacgc tgttacgccc atgtccgagg
2101 agaacggtgc cattatagtg cccgtttatt atggaaatct aggctccagg cattcatcgt
2161 atacttcgca tcagtccaga atatcgtata cctcacatgg cgatctattg ggcggcatgg
2221 ccgtcatggg cgtcagcaca atgaccaagg agagcaaatt gcgaaatcgc aactcacgca
2281 atcaatcagt gggcgccacc aatggcggca ccacctgcct ggaccccaat cacaaggtcg
2341 agcatcgcga cttcgaaatc ggtctggagt gcacggacga agctggcaag attaaacatc
2401 atgacaatcc ttttatcgag cccgtccaga cacaaacggt agtcgacatg aaagatgtga
2461 tggtactgaa tgacattatc gaacaggccg ctggtcggca cagtcgggct agtgatcgcg
2521 gtgtctccgt ttactatttc ccaacagagg acgatgatga ggatgggccg acattaaaag
2581 acaaggccct cgaagcgcta atgaaaggca tcgaagtgtt ttgtgtgtgg gactgttgct
2641 gggtttggtt gaaattgcag gagtggatat cgctgatcgt cttcgatccc tttgtcgagc
2701 tcttcatcac gctgtgcatt gtggtcaaca cgatgttcat ggccatggac catcacgaca
2761 tgaacaagga gatggaacgc atccttaagt gcggaaatta tttcttcacg gcaacattcg
2821 ccattgaggc aaccatgaaa ctgtgcgcca tgagccccaa atactatttc caggagggct
2881 ggaacatctt tgacttcatc attgtggcac tctcattgct ggagctgggc ctcgagggcg
2941 ttcagggcct ctccgtcttg cgttcgtttc gtttgctgcg tgtattcaaa ttggccaagt
3001 cctggccaac acttaattta ctcatttcga ttatgggacg caccatgggc gctttgggta
3061 atctgacatt tgtactttgc attatcatct tcatctttgc ggtgatggga atgcaactgt
3121 tcggaaagaa ttatcatgat aacaaggatc gcttcccgga cggtgacctg ccccgctgga
3181 acttcaccga cttcatgcac agcttcatga tcgtgtttcg ggtgctatgc ggcgagtgga
3241 tcgagtccat gtgggactgt atgcacgtgg gcgatgtatc gtgcattcca ttcttcttgg
3301 ccaccgttgt catcggcaat ttagtggttc ttaacctttt cttagccctg cttttgtcaa
3361 attttggttc atctagctta tcagcgccga cagccgataa cgataccaat aaaatagccg
3421 aggccttcaa tcgaattggg cgatttaaaa gttgggttaa gcgtaatatt gctgattgtt
3481 tcaagttaat acgtaacaaa ttgacaaatc aaataagtga tcaaccatca gagcacggcg
3541 acaacgagct ggagctgggc cacgacgaga tactcgccga cgggctcatc aagaagggca
3601 tcaaggaggc gacacagctg gaggtggcca tcggtgatgg catggagttc acgatacacg
3661 gcgacatgaa gaacaacaag ccgaagaaat ccaaatatct aaataacgca acgatgattg
3721 gcaactcaat taaccaccaa gacaatagac tggaacacga gctaaaccat agaggtttgt
3781 ccttacagga cgacgacact gccagcatta actcatatgg tagccataag aatcgaccat
3841 tcaaggatga gagccacaag ggcagcgccg agacgatgga gggcgaggag aagcgggacg
3901 ccagcaagga ggatttaggt atcgatgagg agctcgacga ggagggcgaa ttggaggagg
3961 gcccgctcga cggcgatatc atcatacatg ccaacgatga ggatatactc gatgaatatc
4021 cagctgattg ctgccccgat tcgtactata agaaatttcc gatcttagcc ggtgatgatg
4081 actcgccgtt ctggcaagga tggggcaatt tacgactgaa aacttttcaa ttaattgaaa
4141 ataaatattt tgaaacagct gttatcacta tgattttaat gagtagctta gctttggcat
4201 tagaagatgt acatctgcca caaagaccca tactgcagga tattttatac tatatggaca
4261 gaatatttac ggttatattc ttcttggaaa tgttaatcaa gtggctggcg ctcggcttca
4321 aagtgtactt cacgaacgcg tggtgctggc tcgatttcgt cattgtcatg gtatcgctta
4381 tcaacttcgt tgcttcactt gttggagctg gtggtattca agccttcaag actatgcgaa
4441 cgttaagagc actgagacca ctacgtgcca tgtcccgtat gcagggcatg agggtcgtcg
4501 ttaatgcgct ggtacaagct ataccgtcca tcttcaatgt gctattggtg tgtctaatat
4561 tttggctaat ttttgccata atgggtgtac agctttttgc tggaaaatat tttaagtgcg
4621 aggacatgaa tggcacgaag ctcagccacg agatcatacc aaatcgcaat gcctgcgaaa
4681 gcgagaacta cacgtgggtg aattcagcaa tgaatttcga tcatgtaggt aacgcgtatc
4741 tgtgcctttt ccaagtggcc accttcaaag gctggataca aatcatgaac gatgctatcg
4801 attcacgaga ggtggacaag cagccaattc gtgaaacgaa catctacatg tatttatatt
4861 tcgtattctt catcatattt ggatcatttt tcacactcaa tctgttcatt ggtgttatca
4921 ttgataattt taatgagcaa aagaaaaaag caggtggatc attagaaatg ttcatgacag
4981 aagatcagaa aaagtactat aatgctatga aaaagatggg ctctaaaaaa ccattaaaag
5041 ccattccaag accaaggtgg cgtccacaag caatagtctt tgaaatagta accgataaga
5101 aattcgatat agtcataatg ttattcattg gtctgaacat gttcaccatg acactcgatc
5161 gttacgatgc gtcggacacg tacaacgcgg tccttgacta tctcaatgcg atattcgtag
5221 ttattttcag ttccgaatgt ctattaaaaa tattcgcttt acgatatcac tattttattg
5281 agccatggaa tttatttgat gtagtagttg tcattttatc catcttaggt ctcgtactta
5341 gcgatattat cgagaaatac ttcgtatcgc cgacactgct ccgagtggtg cgcgtggcca
5401 aagtgggtcg cgtactgcgt ctggtgaagg gcgccaaggg tatacgaacg ctgctgttcg
5461 ccctggccat gtcgctgccg gcgctgttca acatctgcct gctgctgttc ctggtcatgt
5521 tcatcttcgc gatattcggc atgtcgttct tcatgcatgt gaaggagaag agcggcatca
5581 acgacgtcta caacttcaag acgttcggac agagcatgat cctgctcttt cagatgtcta
5641 cctcagccgg ttgggatggt gtactcgacg ccattatcaa tgaggaagca tgcgatccac
5701 ccgacaacga caaaggctat ccgggcaatt gtggttcagc gaccgttgga ataacgtttc
5761 tcctctcata cctagttata agctttttga tagttattaa tatgtacatt gctgtcattc
5821 tcgagaacta tagtcaggcc accgaggatg tgcaggaggg tctcaccgac gacgattacg
5881 atatgtacta tgagatctgg caacagttcg atccggaggg cacccagtac atacgatacg
5941 accagctgtc cgagttcctc gacgtgctgg agcccccgct ccagattcac aagcccaaca
6001 agtacaaaat catatcgatg gacataccca tctgtcgcgg tgacctcatg tactgtgtgg
6061 acatactgga cgcactgacc aaagactttt tcgcgcgcaa aggcaatccc attgaggaga
6121 cgggcgagat tggtgagatt gccgccaggc cggacaccga gggctacgag cccgtctcct
6181 ccaccctctg gcgacagcgg gaggagtact gtgcccgcct cattcaacat gcctggcgca
6241 agcataaaac gcgcgccgag ggcggtggtg caccgtccga cgcggaaggc gacggccccg
6301 aagatggtga tgcgggtggc ggtggcgggg cggcgctgat gctgggtgtt ctggatgttc
6361 cagatgctgc tggcgatgca gcaaccactg gctcccatga cggggcaacg gcactcgatc
6421 ccgagaccga tccatcggga gtaccggcgg cagcggcggt ggccccacag ccagccggtg
6481 acggcggcga gggaccggat ggaggagcaa cagccgatcc gcacgagagc aatgtaaata
6541 gtccgacgat ggacggcgcg acggcgggca gcccgggcgc agggagcgct ggcagcactg
6601 gccgacagac ggccgttctc gtggagagcg atgggtttgt gaccaagaac gggcacaagg
6661 ttgtaataca ctcgcgttcg ccgagcataa cgtcgcgcac ggcggatgtc tgagccaggc
6721 ctcgcccccc cctccaagat gcacgcgagt attaggtgca ggtgcagatg cagtgcagtg
6781 gtggtgccac aacaacaaca acaacaacag caggtgccac tggtagctgc aattgcaact
6841 gcaacagcag caacaggaag aa