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LOCUS XM_022361491 6862 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X9, mRNA. ACCESSION XM_022361491 VERSION XM_022361491.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022361491.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6862 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6862 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 53 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6713 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X9" /protein_id="XP_022217183.2" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL EDIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFII TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDD GISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE KGNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNI RRGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENG AIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRN QSVGATNGGTTCLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKD VMVLNDIIEQAAGRHSRASDRGVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVW DCCWVWLKLQEWISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYF FTATFAIEATMKLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLL RVFKLAKSWPTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDR FPDGDLPRWNFTDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLV VLNLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNK LTNQISDQPSEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMKN NKPKKSKYLNNATMIGNSINHQDNRLEHELNHRGLSLQDDDTASINSYGSHKNRPFKD ESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDEYP ADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLAL ALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIVM VSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVL LVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMNF DHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSFF TLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWRP QAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSEC LLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGRV LRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGINDV YNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITFL LSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYIR YDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGNP IEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSDA EGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAAAA VAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVESD GFVTKNGHKVVIHSRSPSITSRTADV" misc_feature 690..1544 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1899..2456 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2685..3320 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3396..4130 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4140..4955 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4923..5081 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4968..4979 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5103..5855 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5886..6029 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gaggtgccgc aatatggtcg caagaaaaaa caaaaagaaa 421 tccgatatga tgacgaggac gaggatgaag gtccacaacc ggatcctaca cttgaacagg 481 gtgtgccaat acctgttcga ctgcagggca gcttccctcc ggaattggcc tccactcccc 541 tcgaggatat cgatcccttc tacagcaata tactgacatt cgtagttgta agcaaaggaa 601 aagatatttt tcgcttttct gcatcaaaag caatgtggct gctcgatcca ttcaatccga 661 tacgtcgtgt ggccatttac attttagtgc atccactatt ttcgttattc atcattacca 721 caattctcgt caactgcatc ctgatgataa tgccgacaac gcccacagtt gagtccactg 781 aggtgatatt caccggaatc tacacatttg aatcagctgt taaagtgatg gcacgaggtt 841 tcattttatg cccgtttacg tatcttagag atgcatggaa ttggctggac ttcgtagtaa 901 tagctttagc ttatgtgacc atgggtatag atttaggtaa tcttgcagcc ttgcgaacgt 961 ttagggtgct gcgagcgctt aaaaccgtag ccattgtgcc aggcttgaag accattgtcg 1021 gtgcggtcat cgaatctgta aagaatctgc gcgatgtgat aattttgaca atgttctccc 1081 tgtcggtgtt cgcgctgatg gggctgcaaa tctacatggg cgtgctaacg cagaagtgca 1141 tcaagaagtt cccgctggac ggctcctggg gcaacctgac cgacgagaac tgggcctatc 1201 acaatagcaa caactctaat tggtattcgg aagacgacgg tatatccttt ccgttgtgcg 1261 gtaatatctc tggagcgggg caatgtgaag acgattacgt gtgtctgcag gggttcgggc 1321 cgaacccgaa ctatggctac accagtttcg attcgttcgg ttgggcgttt ctgtccgcct 1381 tccggctgat gacgcaggac ttctgggagg atctgtatca gctggtgttg cgtgccgcag 1441 gaccctggca catgctgttc tttatagtca tcatcttcct aggttcattc tatcttgtga 1501 atttgatttt ggccattgtt gccatgtcgt atgacgaatt gcaaaagaag gccgaagaag 1561 aagaggctgc cgaagaggag gcgatacgtg aagccgagga agctgccgcc gccaaagcag 1621 ccaagctgga ggagcgcgcc aatgcgcagg cccaggccgc cgccgatgca gctgccgccg 1681 aagaggcggc tcttcatccg gagatggcca agagtccgac gtattcgtgc atcagctatg 1741 agctatttgt gggcggcgag aaaggcaacg atgacaacaa caaggagaag atgtccatac 1801 gcagcgttga ggtggagtcg gagtcggtga gcgttataca aagacaacca gcacctacca 1861 cagcacacca agctaccaaa gttcgtaaag tgagcacgac atccttatcc ttacctggtt 1921 caccgtttaa catacgcagg ggatcacgta gttctcacaa gtacacgatc cggaatggac 1981 gtggacgctt tggtataccc ggcagcgatc gcaagccgtt ggtattgtca acatatcagg 2041 atgctcagca gcacttgccc tatgccgatg attcgaacgc tgttacgccc atgtccgagg 2101 agaacggtgc cattatagtg cccgtttatt atggaaatct aggctccagg cattcatcgt 2161 atacttcgca tcagtccaga atatcgtata cctcacatgg cgatctattg ggcggcatgg 2221 ccgtcatggg cgtcagcaca atgaccaagg agagcaaatt gcgaaatcgc aactcacgca 2281 atcaatcagt gggcgccacc aatggcggca ccacctgcct ggaccccaat cacaaggtcg 2341 agcatcgcga cttcgaaatc ggtctggagt gcacggacga agctggcaag attaaacatc 2401 atgacaatcc ttttatcgag cccgtccaga cacaaacggt agtcgacatg aaagatgtga 2461 tggtactgaa tgacattatc gaacaggccg ctggtcggca cagtcgggct agtgatcgcg 2521 gtgtctccgt ttactatttc ccaacagagg acgatgatga ggatgggccg acattaaaag 2581 acaaggccct cgaagcgcta atgaaaggca tcgaagtgtt ttgtgtgtgg gactgttgct 2641 gggtttggtt gaaattgcag gagtggatat cgctgatcgt cttcgatccc tttgtcgagc 2701 tcttcatcac gctgtgcatt gtggtcaaca cgatgttcat ggccatggac catcacgaca 2761 tgaacaagga gatggaacgc atccttaagt gcggaaatta tttcttcacg gcaacattcg 2821 ccattgaggc aaccatgaaa ctgtgcgcca tgagccccaa atactatttc caggagggct 2881 ggaacatctt tgacttcatc attgtggcac tctcattgct ggagctgggc ctcgagggcg 2941 ttcagggcct ctccgtcttg cgttcgtttc gtttgctgcg tgtattcaaa ttggccaagt 3001 cctggccaac acttaattta ctcatttcga ttatgggacg caccatgggc gctttgggta 3061 atctgacatt tgtactttgc attatcatct tcatctttgc ggtgatggga atgcaactgt 3121 tcggaaagaa ttatcatgat aacaaggatc gcttcccgga cggtgacctg ccccgctgga 3181 acttcaccga cttcatgcac agcttcatga tcgtgtttcg ggtgctatgc ggcgagtgga 3241 tcgagtccat gtgggactgt atgcacgtgg gcgatgtatc gtgcattcca ttcttcttgg 3301 ccaccgttgt catcggcaat ttagtggttc ttaacctttt cttagccctg cttttgtcaa 3361 attttggttc atctagctta tcagcgccga cagccgataa cgataccaat aaaatagccg 3421 aggccttcaa tcgaattggg cgatttaaaa gttgggttaa gcgtaatatt gctgattgtt 3481 tcaagttaat acgtaacaaa ttgacaaatc aaataagtga tcaaccatca gagcacggcg 3541 acaacgagct ggagctgggc cacgacgaga tactcgccga cgggctcatc aagaagggca 3601 tcaaggaggc gacacagctg gaggtggcca tcggtgatgg catggagttc acgatacacg 3661 gcgacatgaa gaacaacaag ccgaagaaat ccaaatatct aaataacgca acgatgattg 3721 gcaactcaat taaccaccaa gacaatagac tggaacacga gctaaaccat agaggtttgt 3781 ccttacagga cgacgacact gccagcatta actcatatgg tagccataag aatcgaccat 3841 tcaaggatga gagccacaag ggcagcgccg agacgatgga gggcgaggag aagcgggacg 3901 ccagcaagga ggatttaggt atcgatgagg agctcgacga ggagggcgaa ttggaggagg 3961 gcccgctcga cggcgatatc atcatacatg ccaacgatga ggatatactc gatgaatatc 4021 cagctgattg ctgccccgat tcgtactata agaaatttcc gatcttagcc ggtgatgatg 4081 actcgccgtt ctggcaagga tggggcaatt tacgactgaa aacttttcaa ttaattgaaa 4141 ataaatattt tgaaacagct gttatcacta tgattttaat gagtagctta gctttggcat 4201 tagaagatgt acatctgcca caaagaccca tactgcagga tattttatac tatatggaca 4261 gaatatttac ggttatattc ttcttggaaa tgttaatcaa gtggctggcg ctcggcttca 4321 aagtgtactt cacgaacgcg tggtgctggc tcgatttcgt cattgtcatg gtatcgctta 4381 tcaacttcgt tgcttcactt gttggagctg gtggtattca agccttcaag actatgcgaa 4441 cgttaagagc actgagacca ctacgtgcca tgtcccgtat gcagggcatg agggtcgtcg 4501 ttaatgcgct ggtacaagct ataccgtcca tcttcaatgt gctattggtg tgtctaatat 4561 tttggctaat ttttgccata atgggtgtac agctttttgc tggaaaatat tttaagtgcg 4621 aggacatgaa tggcacgaag ctcagccacg agatcatacc aaatcgcaat gcctgcgaaa 4681 gcgagaacta cacgtgggtg aattcagcaa tgaatttcga tcatgtaggt aacgcgtatc 4741 tgtgcctttt ccaagtggcc accttcaaag gctggataca aatcatgaac gatgctatcg 4801 attcacgaga ggtggacaag cagccaattc gtgaaacgaa catctacatg tatttatatt 4861 tcgtattctt catcatattt ggatcatttt tcacactcaa tctgttcatt ggtgttatca 4921 ttgataattt taatgagcaa aagaaaaaag caggtggatc attagaaatg ttcatgacag 4981 aagatcagaa aaagtactat aatgctatga aaaagatggg ctctaaaaaa ccattaaaag 5041 ccattccaag accaaggtgg cgtccacaag caatagtctt tgaaatagta accgataaga 5101 aattcgatat agtcataatg ttattcattg gtctgaacat gttcaccatg acactcgatc 5161 gttacgatgc gtcggacacg tacaacgcgg tccttgacta tctcaatgcg atattcgtag 5221 ttattttcag ttccgaatgt ctattaaaaa tattcgcttt acgatatcac tattttattg 5281 agccatggaa tttatttgat gtagtagttg tcattttatc catcttaggt ctcgtactta 5341 gcgatattat cgagaaatac ttcgtatcgc cgacactgct ccgagtggtg cgcgtggcca 5401 aagtgggtcg cgtactgcgt ctggtgaagg gcgccaaggg tatacgaacg ctgctgttcg 5461 ccctggccat gtcgctgccg gcgctgttca acatctgcct gctgctgttc ctggtcatgt 5521 tcatcttcgc gatattcggc atgtcgttct tcatgcatgt gaaggagaag agcggcatca 5581 acgacgtcta caacttcaag acgttcggac agagcatgat cctgctcttt cagatgtcta 5641 cctcagccgg ttgggatggt gtactcgacg ccattatcaa tgaggaagca tgcgatccac 5701 ccgacaacga caaaggctat ccgggcaatt gtggttcagc gaccgttgga ataacgtttc 5761 tcctctcata cctagttata agctttttga tagttattaa tatgtacatt gctgtcattc 5821 tcgagaacta tagtcaggcc accgaggatg tgcaggaggg tctcaccgac gacgattacg 5881 atatgtacta tgagatctgg caacagttcg atccggaggg cacccagtac atacgatacg 5941 accagctgtc cgagttcctc gacgtgctgg agcccccgct ccagattcac aagcccaaca 6001 agtacaaaat catatcgatg gacataccca tctgtcgcgg tgacctcatg tactgtgtgg 6061 acatactgga cgcactgacc aaagactttt tcgcgcgcaa aggcaatccc attgaggaga 6121 cgggcgagat tggtgagatt gccgccaggc cggacaccga gggctacgag cccgtctcct 6181 ccaccctctg gcgacagcgg gaggagtact gtgcccgcct cattcaacat gcctggcgca 6241 agcataaaac gcgcgccgag ggcggtggtg caccgtccga cgcggaaggc gacggccccg 6301 aagatggtga tgcgggtggc ggtggcgggg cggcgctgat gctgggtgtt ctggatgttc 6361 cagatgctgc tggcgatgca gcaaccactg gctcccatga cggggcaacg gcactcgatc 6421 ccgagaccga tccatcggga gtaccggcgg cagcggcggt ggccccacag ccagccggtg 6481 acggcggcga gggaccggat ggaggagcaa cagccgatcc gcacgagagc aatgtaaata 6541 gtccgacgat ggacggcgcg acggcgggca gcccgggcgc agggagcgct ggcagcactg 6601 gccgacagac ggccgttctc gtggagagcg atgggtttgt gaccaagaac gggcacaagg 6661 ttgtaataca ctcgcgttcg ccgagcataa cgtcgcgcac ggcggatgtc tgagccaggc 6721 ctcgcccccc cctccaagat gcacgcgagt attaggtgca ggtgcagatg cagtgcagtg 6781 gtggtgccac aacaacaaca acaacaacag caggtgccac tggtagctgc aattgcaact 6841 gcaacagcag caacaggaag aa