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LOCUS XM_022361490 6865 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X8, mRNA. ACCESSION XM_022361490 VERSION XM_022361490.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022361490.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6865 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6865 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 51 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6716 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X8" /protein_id="XP_022217182.2" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLEDIDPFYSNILT FVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMIM PTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDFVVIALAYVTMG IDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALM GLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDGISFPLCGNISG AGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRAAGPW HMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIREAEEAAAAKAA KLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEKGNDDNNKEKMS IRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNIRRGSRSSHKYTI RNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLG SRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTTC LDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAA GRHSRASDRGVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQEW ISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATMK LCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTL NLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNFT DFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLSN FGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSGE RTNQISWIWSEEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDMK NNKPKKSKYLNNATMIGNSINHQDNRLEHELNHRGLSLQDDDTASINSYGSHKNRPFK DESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDEY PADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLA LALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIV MVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNV LLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMN FDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSF FTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWR PQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSE CLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGR VLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGIND VYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITF LLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYI RYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGN PIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPSD AEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAAA AVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVES DGFVTKNGHKVVIHSRSPSITSRTADV" misc_feature 654..1508 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1863..2420 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2649..3284 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3360..4133 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4143..4958 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4926..5084 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4971..4982 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5106..5858 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5889..6032 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gagatccgat atgatgacga ggacgaggat gaaggtccac 421 aaccggatcc tacacttgaa cagggtgtgc caatacctgt tcgactgcag ggcagcttcc 481 ctccggaatt ggcctccact cccctcgagg atatcgatcc cttctacagc aatatactga 541 cattcgtagt tgtaagcaaa ggaaaagata tttttcgctt ttctgcatca aaagcaatgt 601 ggctgctcga tccattcaat ccgatacgtc gtgtggccat ttacatttta gtgcatccac 661 tattttcgtt attcatcatt accacaattc tcgtcaactg catcctgatg ataatgccga 721 caacgcccac agttgagtcc actgaggtga tattcaccgg aatctacaca tttgaatcag 781 ctgttaaagt gatggcacga ggtttcattt tatgcccgtt tacgtatctt agagatgcat 841 ggaattggct ggacttcgta gtaatagctt tagcttatgt gaccatgggt atagatttag 901 gtaatcttgc agccttgcga acgtttaggg tgctgcgagc gcttaaaacc gtagccattg 961 tgccaggctt gaagaccatt gtcggtgcgg tcatcgaatc tgtaaagaat ctgcgcgatg 1021 tgataatttt gacaatgttc tccctgtcgg tgttcgcgct gatggggctg caaatctaca 1081 tgggcgtgct aacgcagaag tgcatcaaga agttcccgct ggacggctcc tggggcaacc 1141 tgaccgacga gaactgggcc tatcacaata gcaacaactc taattggtat tcggaagacg 1201 acggtatatc ctttccgttg tgcggtaata tctctggagc ggggcaatgt gaagacgatt 1261 acgtgtgtct gcaggggttc gggccgaacc cgaactatgg ctacaccagt ttcgattcgt 1321 tcggttgggc gtttctgtcc gccttccggc tgatgacgca ggacttctgg gaggatctgt 1381 atcagctggt gttgcgtgcc gcaggaccct ggcacatgct gttctttata gtcatcatct 1441 tcctaggttc attctatctt gtgaatttga ttttggccat tgttgccatg tcgtatgacg 1501 aattgcaaaa gaaggccgaa gaagaagagg ctgccgaaga ggaggcgata cgtgaagccg 1561 aggaagctgc cgccgccaaa gcagccaagc tggaggagcg cgccaatgcg caggcccagg 1621 ccgccgccga tgcagctgcc gccgaagagg cggctcttca tccggagatg gccaagagtc 1681 cgacgtattc gtgcatcagc tatgagctat ttgtgggcgg cgagaaaggc aacgatgaca 1741 acaacaagga gaagatgtcc atacgcagcg ttgaggtgga gtcggagtcg gtgagcgtta 1801 tacaaagaca accagcacct accacagcac accaagctac caaagttcgt aaagtgagca 1861 cgacatcctt atccttacct ggttcaccgt ttaacatacg caggggatca cgtagttctc 1921 acaagtacac gatccggaat ggacgtggac gctttggtat acccggcagc gatcgcaagc 1981 cgttggtatt gtcaacatat caggatgctc agcagcactt gccctatgcc gatgattcga 2041 acgctgttac gcccatgtcc gaggagaacg gtgccattat agtgcccgtt tattatggaa 2101 atctaggctc caggcattca tcgtatactt cgcatcagtc cagaatatcg tatacctcac 2161 atggcgatct attgggcggc atggccgtca tgggcgtcag cacaatgacc aaggagagca 2221 aattgcgaaa tcgcaactca cgcaatcaat cagtgggcgc caccaatggc ggcaccacct 2281 gcctggaccc caatcacaag gtcgagcatc gcgacttcga aatcggtctg gagtgcacgg 2341 acgaagctgg caagattaaa catcatgaca atccttttat cgagcccgtc cagacacaaa 2401 cggtagtcga catgaaagat gtgatggtac tgaatgacat tatcgaacag gccgctggtc 2461 ggcacagtcg ggctagtgat cgcggtgtct ccgtttacta tttcccaaca gaggacgatg 2521 atgaggatgg gccgacatta aaagacaagg ccctcgaagc gctaatgaaa ggcatcgaag 2581 tgttttgtgt gtgggactgt tgctgggttt ggttgaaatt gcaggagtgg atatcgctga 2641 tcgtcttcga tccctttgtc gagctcttca tcacgctgtg cattgtggtc aacacgatgt 2701 tcatggccat ggaccatcac gacatgaaca aggagatgga acgcatcctt aagtgcggaa 2761 attatttctt cacggcaaca ttcgccattg aggcaaccat gaaactgtgc gccatgagcc 2821 ccaaatacta tttccaggag ggctggaaca tctttgactt catcattgtg gcactctcat 2881 tgctggagct gggcctcgag ggcgttcagg gcctctccgt cttgcgttcg tttcgtttgc 2941 tgcgtgtatt caaattggcc aagtcctggc caacacttaa tttactcatt tcgattatgg 3001 gacgcaccat gggcgctttg ggtaatctga catttgtact ttgcattatc atcttcatct 3061 ttgcggtgat gggaatgcaa ctgttcggaa agaattatca tgataacaag gatcgcttcc 3121 cggacggtga cctgccccgc tggaacttca ccgacttcat gcacagcttc atgatcgtgt 3181 ttcgggtgct atgcggcgag tggatcgagt ccatgtggga ctgtatgcac gtgggcgatg 3241 tatcgtgcat tccattcttc ttggccaccg ttgtcatcgg caatttagtg gttcttaacc 3301 ttttcttagc cctgcttttg tcaaattttg gttcatctag cttatcagcg ccgacagccg 3361 ataacgatac caataaaata gccgaggcct tcaatcgaat tgggcgattt aaaagttggg 3421 ttaagcgtaa tattgctgat tgtttcaagt taatacgtaa caaattgaca aatcaaataa 3481 gtgatcaacc atcaggtgag aggaccaacc agatcagttg gatttggagc gaagagcacg 3541 gcgacaacga gctggagctg ggccacgacg agatactcgc cgacgggctc atcaagaagg 3601 gcatcaagga ggcgacacag ctggaggtgg ccatcggtga tggcatggag ttcacgatac 3661 acggcgacat gaagaacaac aagccgaaga aatccaaata tctaaataac gcaacgatga 3721 ttggcaactc aattaaccac caagacaata gactggaaca cgagctaaac catagaggtt 3781 tgtccttaca ggacgacgac actgccagca ttaactcata tggtagccat aagaatcgac 3841 cattcaagga tgagagccac aagggcagcg ccgagacgat ggagggcgag gagaagcggg 3901 acgccagcaa ggaggattta ggtatcgatg aggagctcga cgaggagggc gaattggagg 3961 agggcccgct cgacggcgat atcatcatac atgccaacga tgaggatata ctcgatgaat 4021 atccagctga ttgctgcccc gattcgtact ataagaaatt tccgatctta gccggtgatg 4081 atgactcgcc gttctggcaa ggatggggca atttacgact gaaaactttt caattaattg 4141 aaaataaata ttttgaaaca gctgttatca ctatgatttt aatgagtagc ttagctttgg 4201 cattagaaga tgtacatctg ccacaaagac ccatactgca ggatatttta tactatatgg 4261 acagaatatt tacggttata ttcttcttgg aaatgttaat caagtggctg gcgctcggct 4321 tcaaagtgta cttcacgaac gcgtggtgct ggctcgattt cgtcattgtc atggtatcgc 4381 ttatcaactt cgttgcttca cttgttggag ctggtggtat tcaagccttc aagactatgc 4441 gaacgttaag agcactgaga ccactacgtg ccatgtcccg tatgcagggc atgagggtcg 4501 tcgttaatgc gctggtacaa gctataccgt ccatcttcaa tgtgctattg gtgtgtctaa 4561 tattttggct aatttttgcc ataatgggtg tacagctttt tgctggaaaa tattttaagt 4621 gcgaggacat gaatggcacg aagctcagcc acgagatcat accaaatcgc aatgcctgcg 4681 aaagcgagaa ctacacgtgg gtgaattcag caatgaattt cgatcatgta ggtaacgcgt 4741 atctgtgcct tttccaagtg gccaccttca aaggctggat acaaatcatg aacgatgcta 4801 tcgattcacg agaggtggac aagcagccaa ttcgtgaaac gaacatctac atgtatttat 4861 atttcgtatt cttcatcata tttggatcat ttttcacact caatctgttc attggtgtta 4921 tcattgataa ttttaatgag caaaagaaaa aagcaggtgg atcattagaa atgttcatga 4981 cagaagatca gaaaaagtac tataatgcta tgaaaaagat gggctctaaa aaaccattaa 5041 aagccattcc aagaccaagg tggcgtccac aagcaatagt ctttgaaata gtaaccgata 5101 agaaattcga tatagtcata atgttattca ttggtctgaa catgttcacc atgacactcg 5161 atcgttacga tgcgtcggac acgtacaacg cggtccttga ctatctcaat gcgatattcg 5221 tagttatttt cagttccgaa tgtctattaa aaatattcgc tttacgatat cactatttta 5281 ttgagccatg gaatttattt gatgtagtag ttgtcatttt atccatctta ggtctcgtac 5341 ttagcgatat tatcgagaaa tacttcgtat cgccgacact gctccgagtg gtgcgcgtgg 5401 ccaaagtggg tcgcgtactg cgtctggtga agggcgccaa gggtatacga acgctgctgt 5461 tcgccctggc catgtcgctg ccggcgctgt tcaacatctg cctgctgctg ttcctggtca 5521 tgttcatctt cgcgatattc ggcatgtcgt tcttcatgca tgtgaaggag aagagcggca 5581 tcaacgacgt ctacaacttc aagacgttcg gacagagcat gatcctgctc tttcagatgt 5641 ctacctcagc cggttgggat ggtgtactcg acgccattat caatgaggaa gcatgcgatc 5701 cacccgacaa cgacaaaggc tatccgggca attgtggttc agcgaccgtt ggaataacgt 5761 ttctcctctc atacctagtt ataagctttt tgatagttat taatatgtac attgctgtca 5821 ttctcgagaa ctatagtcag gccaccgagg atgtgcagga gggtctcacc gacgacgatt 5881 acgatatgta ctatgagatc tggcaacagt tcgatccgga gggcacccag tacatacgat 5941 acgaccagct gtccgagttc ctcgacgtgc tggagccccc gctccagatt cacaagccca 6001 acaagtacaa aatcatatcg atggacatac ccatctgtcg cggtgacctc atgtactgtg 6061 tggacatact ggacgcactg accaaagact ttttcgcgcg caaaggcaat cccattgagg 6121 agacgggcga gattggtgag attgccgcca ggccggacac cgagggctac gagcccgtct 6181 cctccaccct ctggcgacag cgggaggagt actgtgcccg cctcattcaa catgcctggc 6241 gcaagcataa aacgcgcgcc gagggcggtg gtgcaccgtc cgacgcggaa ggcgacggcc 6301 ccgaagatgg tgatgcgggt ggcggtggcg gggcggcgct gatgctgggt gttctggatg 6361 ttccagatgc tgctggcgat gcagcaacca ctggctccca tgacggggca acggcactcg 6421 atcccgagac cgatccatcg ggagtaccgg cggcagcggc ggtggcccca cagccagccg 6481 gtgacggcgg cgagggaccg gatggaggag caacagccga tccgcacgag agcaatgtaa 6541 atagtccgac gatggacggc gcgacggcgg gcagcccggg cgcagggagc gctggcagca 6601 ctggccgaca gacggccgtt ctcgtggaga gcgatgggtt tgtgaccaag aacgggcaca 6661 aggttgtaat acactcgcgt tcgccgagca taacgtcgcg cacggcggat gtctgagcca 6721 ggcctcgccc ccccctccaa gatgcacgcg agtattaggt gcaggtgcag atgcagtgca 6781 gtggtggtgc cacaacaaca acaacaacaa cagcaggtgc cactggtagc tgcaattgca 6841 actgcaacag cagcaacagg aagaa