PREDICTED: Drosophila obscura sodium channel protein para
LOCUS XM_022361489 6868 bp mRNA linear INV 14-MAY-2021
(LOC111070739), transcript variant X6, mRNA.
ACCESSION XM_022361489
VERSION XM_022361489.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022361489.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6868
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..6868
/gene="LOC111070739"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 43 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 5 samples with support for all annotated
introns"
/db_xref="GeneID:111070739"
CDS 237..6719
/gene="LOC111070739"
/codon_start=1
/product="sodium channel protein para isoform X6"
/protein_id="XP_022217181.2"
/db_xref="GeneID:111070739"
/translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK
RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL
EDIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFII
TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD
FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII
LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDD
GISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED
LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI
REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE
KGNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNI
RRGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENG
AIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRN
QSVGATNGGTTCLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKD
VMVLNDIIEQAAGRHSRASDRGEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLK
LQEWISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIE
ATMKLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKS
WPTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPR
WNFTDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLAL
LLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQ
PSGKGVCRCISAEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDM
KNNKPKKSKYLNNATMIGNSINHQDNRLEHELNHRGLSLQDDDTASINSYGSHKNRPF
KDESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDE
YPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSL
ALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVI
VMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFN
VLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAM
NFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGS
FFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRW
RPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSS
ECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVG
RVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGIN
DVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGIT
FLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQY
IRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKG
NPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPS
DAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAA
AAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVE
SDGFVTKNGHKVVIHSRSPSITSRTADV"
misc_feature 690..1544
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 1899..2456
/gene="LOC111070739"
/note="Cytoplasmic domain of voltage-gated Na+ ion
channel; Region: Na_trans_cytopl; pfam11933"
/db_xref="CDD:463401"
misc_feature 2661..3296
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 3372..4136
/gene="LOC111070739"
/note="Sodium ion transport-associated; Region:
Na_trans_assoc; pfam06512"
/db_xref="CDD:461936"
misc_feature 4146..4961
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 4929..5087
/gene="LOC111070739"
/note="Inactivation gate of the voltage-gated sodium
channel alpha subunits; Region: Na_channel_gate; cd13433"
/db_xref="CDD:240441"
misc_feature 4974..4985
/gene="LOC111070739"
/note="putative hydrophobic latch; other site"
/db_xref="CDD:240441"
misc_feature 5109..5861
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 5892..6035
/gene="LOC111070739"
/note="Voltage-dependent L-type calcium channel,
IQ-associated; Region: GPHH; pfam16905"
/db_xref="CDD:465306"
ORIGIN
1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca
61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg
121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac
181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga
241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg
301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg
361 aaagaaagag agccgaggga gaggtgccgc aatatggtcg caagaaaaaa caaaaagaaa
421 tccgatatga tgacgaggac gaggatgaag gtccacaacc ggatcctaca cttgaacagg
481 gtgtgccaat acctgttcga ctgcagggca gcttccctcc ggaattggcc tccactcccc
541 tcgaggatat cgatcccttc tacagcaata tactgacatt cgtagttgta agcaaaggaa
601 aagatatttt tcgcttttct gcatcaaaag caatgtggct gctcgatcca ttcaatccga
661 tacgtcgtgt ggccatttac attttagtgc atccactatt ttcgttattc atcattacca
721 caattctcgt caactgcatc ctgatgataa tgccgacaac gcccacagtt gagtccactg
781 aggtgatatt caccggaatc tacacatttg aatcagctgt taaagtgatg gcacgaggtt
841 tcattttatg cccgtttacg tatcttagag atgcatggaa ttggctggac ttcgtagtaa
901 tagctttagc ttatgtgacc atgggtatag atttaggtaa tcttgcagcc ttgcgaacgt
961 ttagggtgct gcgagcgctt aaaaccgtag ccattgtgcc aggcttgaag accattgtcg
1021 gtgcggtcat cgaatctgta aagaatctgc gcgatgtgat aattttgaca atgttctccc
1081 tgtcggtgtt cgcgctgatg gggctgcaaa tctacatggg cgtgctaacg cagaagtgca
1141 tcaagaagtt cccgctggac ggctcctggg gcaacctgac cgacgagaac tgggcctatc
1201 acaatagcaa caactctaat tggtattcgg aagacgacgg tatatccttt ccgttgtgcg
1261 gtaatatctc tggagcgggg caatgtgaag acgattacgt gtgtctgcag gggttcgggc
1321 cgaacccgaa ctatggctac accagtttcg attcgttcgg ttgggcgttt ctgtccgcct
1381 tccggctgat gacgcaggac ttctgggagg atctgtatca gctggtgttg cgtgccgcag
1441 gaccctggca catgctgttc tttatagtca tcatcttcct aggttcattc tatcttgtga
1501 atttgatttt ggccattgtt gccatgtcgt atgacgaatt gcaaaagaag gccgaagaag
1561 aagaggctgc cgaagaggag gcgatacgtg aagccgagga agctgccgcc gccaaagcag
1621 ccaagctgga ggagcgcgcc aatgcgcagg cccaggccgc cgccgatgca gctgccgccg
1681 aagaggcggc tcttcatccg gagatggcca agagtccgac gtattcgtgc atcagctatg
1741 agctatttgt gggcggcgag aaaggcaacg atgacaacaa caaggagaag atgtccatac
1801 gcagcgttga ggtggagtcg gagtcggtga gcgttataca aagacaacca gcacctacca
1861 cagcacacca agctaccaaa gttcgtaaag tgagcacgac atccttatcc ttacctggtt
1921 caccgtttaa catacgcagg ggatcacgta gttctcacaa gtacacgatc cggaatggac
1981 gtggacgctt tggtataccc ggcagcgatc gcaagccgtt ggtattgtca acatatcagg
2041 atgctcagca gcacttgccc tatgccgatg attcgaacgc tgttacgccc atgtccgagg
2101 agaacggtgc cattatagtg cccgtttatt atggaaatct aggctccagg cattcatcgt
2161 atacttcgca tcagtccaga atatcgtata cctcacatgg cgatctattg ggcggcatgg
2221 ccgtcatggg cgtcagcaca atgaccaagg agagcaaatt gcgaaatcgc aactcacgca
2281 atcaatcagt gggcgccacc aatggcggca ccacctgcct ggaccccaat cacaaggtcg
2341 agcatcgcga cttcgaaatc ggtctggagt gcacggacga agctggcaag attaaacatc
2401 atgacaatcc ttttatcgag cccgtccaga cacaaacggt agtcgacatg aaagatgtga
2461 tggtactgaa tgacattatc gaacaggccg ctggtcggca cagtcgggct agtgatcgcg
2521 gtgaggacga tgatgaggat gggccgacat taaaagacaa ggccctcgaa gcgctaatga
2581 aaggcatcga agtgttttgt gtgtgggact gttgctgggt ttggttgaaa ttgcaggagt
2641 ggatatcgct gatcgtcttc gatccctttg tcgagctctt catcacgctg tgcattgtgg
2701 tcaacacgat gttcatggcc atggaccatc acgacatgaa caaggagatg gaacgcatcc
2761 ttaagtgcgg aaattatttc ttcacggcaa cattcgccat tgaggcaacc atgaaactgt
2821 gcgccatgag ccccaaatac tatttccagg agggctggaa catctttgac ttcatcattg
2881 tggcactctc attgctggag ctgggcctcg agggcgttca gggcctctcc gtcttgcgtt
2941 cgtttcgttt gctgcgtgta ttcaaattgg ccaagtcctg gccaacactt aatttactca
3001 tttcgattat gggacgcacc atgggcgctt tgggtaatct gacatttgta ctttgcatta
3061 tcatcttcat ctttgcggtg atgggaatgc aactgttcgg aaagaattat catgataaca
3121 aggatcgctt cccggacggt gacctgcccc gctggaactt caccgacttc atgcacagct
3181 tcatgatcgt gtttcgggtg ctatgcggcg agtggatcga gtccatgtgg gactgtatgc
3241 acgtgggcga tgtatcgtgc attccattct tcttggccac cgttgtcatc ggcaatttag
3301 tggttcttaa ccttttctta gccctgcttt tgtcaaattt tggttcatct agcttatcag
3361 cgccgacagc cgataacgat accaataaaa tagccgaggc cttcaatcga attgggcgat
3421 ttaaaagttg ggttaagcgt aatattgctg attgtttcaa gttaatacgt aacaaattga
3481 caaatcaaat aagtgatcaa ccatcaggca aaggcgtttg tcgttgtata tctgcagagc
3541 acggcgacaa cgagctggag ctgggccacg acgagatact cgccgacggg ctcatcaaga
3601 agggcatcaa ggaggcgaca cagctggagg tggccatcgg tgatggcatg gagttcacga
3661 tacacggcga catgaagaac aacaagccga agaaatccaa atatctaaat aacgcaacga
3721 tgattggcaa ctcaattaac caccaagaca atagactgga acacgagcta aaccatagag
3781 gtttgtcctt acaggacgac gacactgcca gcattaactc atatggtagc cataagaatc
3841 gaccattcaa ggatgagagc cacaagggca gcgccgagac gatggagggc gaggagaagc
3901 gggacgccag caaggaggat ttaggtatcg atgaggagct cgacgaggag ggcgaattgg
3961 aggagggccc gctcgacggc gatatcatca tacatgccaa cgatgaggat atactcgatg
4021 aatatccagc tgattgctgc cccgattcgt actataagaa atttccgatc ttagccggtg
4081 atgatgactc gccgttctgg caaggatggg gcaatttacg actgaaaact tttcaattaa
4141 ttgaaaataa atattttgaa acagctgtta tcactatgat tttaatgagt agcttagctt
4201 tggcattaga agatgtacat ctgccacaaa gacccatact gcaggatatt ttatactata
4261 tggacagaat atttacggtt atattcttct tggaaatgtt aatcaagtgg ctggcgctcg
4321 gcttcaaagt gtacttcacg aacgcgtggt gctggctcga tttcgtcatt gtcatggtat
4381 cgcttatcaa cttcgttgct tcacttgttg gagctggtgg tattcaagcc ttcaagacta
4441 tgcgaacgtt aagagcactg agaccactac gtgccatgtc ccgtatgcag ggcatgaggg
4501 tcgtcgttaa tgcgctggta caagctatac cgtccatctt caatgtgcta ttggtgtgtc
4561 taatattttg gctaattttt gccataatgg gtgtacagct ttttgctgga aaatatttta
4621 agtgcgagga catgaatggc acgaagctca gccacgagat cataccaaat cgcaatgcct
4681 gcgaaagcga gaactacacg tgggtgaatt cagcaatgaa tttcgatcat gtaggtaacg
4741 cgtatctgtg ccttttccaa gtggccacct tcaaaggctg gatacaaatc atgaacgatg
4801 ctatcgattc acgagaggtg gacaagcagc caattcgtga aacgaacatc tacatgtatt
4861 tatatttcgt attcttcatc atatttggat catttttcac actcaatctg ttcattggtg
4921 ttatcattga taattttaat gagcaaaaga aaaaagcagg tggatcatta gaaatgttca
4981 tgacagaaga tcagaaaaag tactataatg ctatgaaaaa gatgggctct aaaaaaccat
5041 taaaagccat tccaagacca aggtggcgtc cacaagcaat agtctttgaa atagtaaccg
5101 ataagaaatt cgatatagtc ataatgttat tcattggtct gaacatgttc accatgacac
5161 tcgatcgtta cgatgcgtcg gacacgtaca acgcggtcct tgactatctc aatgcgatat
5221 tcgtagttat tttcagttcc gaatgtctat taaaaatatt cgctttacga tatcactatt
5281 ttattgagcc atggaattta tttgatgtag tagttgtcat tttatccatc ttaggtctcg
5341 tacttagcga tattatcgag aaatacttcg tatcgccgac actgctccga gtggtgcgcg
5401 tggccaaagt gggtcgcgta ctgcgtctgg tgaagggcgc caagggtata cgaacgctgc
5461 tgttcgccct ggccatgtcg ctgccggcgc tgttcaacat ctgcctgctg ctgttcctgg
5521 tcatgttcat cttcgcgata ttcggcatgt cgttcttcat gcatgtgaag gagaagagcg
5581 gcatcaacga cgtctacaac ttcaagacgt tcggacagag catgatcctg ctctttcaga
5641 tgtctacctc agccggttgg gatggtgtac tcgacgccat tatcaatgag gaagcatgcg
5701 atccacccga caacgacaaa ggctatccgg gcaattgtgg ttcagcgacc gttggaataa
5761 cgtttctcct ctcataccta gttataagct ttttgatagt tattaatatg tacattgctg
5821 tcattctcga gaactatagt caggccaccg aggatgtgca ggagggtctc accgacgacg
5881 attacgatat gtactatgag atctggcaac agttcgatcc ggagggcacc cagtacatac
5941 gatacgacca gctgtccgag ttcctcgacg tgctggagcc cccgctccag attcacaagc
6001 ccaacaagta caaaatcata tcgatggaca tacccatctg tcgcggtgac ctcatgtact
6061 gtgtggacat actggacgca ctgaccaaag actttttcgc gcgcaaaggc aatcccattg
6121 aggagacggg cgagattggt gagattgccg ccaggccgga caccgagggc tacgagcccg
6181 tctcctccac cctctggcga cagcgggagg agtactgtgc ccgcctcatt caacatgcct
6241 ggcgcaagca taaaacgcgc gccgagggcg gtggtgcacc gtccgacgcg gaaggcgacg
6301 gccccgaaga tggtgatgcg ggtggcggtg gcggggcggc gctgatgctg ggtgttctgg
6361 atgttccaga tgctgctggc gatgcagcaa ccactggctc ccatgacggg gcaacggcac
6421 tcgatcccga gaccgatcca tcgggagtac cggcggcagc ggcggtggcc ccacagccag
6481 ccggtgacgg cggcgaggga ccggatggag gagcaacagc cgatccgcac gagagcaatg
6541 taaatagtcc gacgatggac ggcgcgacgg cgggcagccc gggcgcaggg agcgctggca
6601 gcactggccg acagacggcc gttctcgtgg agagcgatgg gtttgtgacc aagaacgggc
6661 acaaggttgt aatacactcg cgttcgccga gcataacgtc gcgcacggcg gatgtctgag
6721 ccaggcctcg cccccccctc caagatgcac gcgagtatta ggtgcaggtg cagatgcagt
6781 gcagtggtgg tgccacaaca acaacaacaa caacagcagg tgccactggt agctgcaatt
6841 gcaactgcaa cagcagcaac aggaagaa