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LOCUS XM_022361489 6868 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X6, mRNA. ACCESSION XM_022361489 VERSION XM_022361489.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022361489.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6868 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6868 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 43 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6719 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X6" /protein_id="XP_022217181.2" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL EDIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFII TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDD GISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE KGNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNI RRGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENG AIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRN QSVGATNGGTTCLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKD VMVLNDIIEQAAGRHSRASDRGEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLK LQEWISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIE ATMKLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKS WPTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPR WNFTDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLAL LLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQ PSGKGVCRCISAEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDM KNNKPKKSKYLNNATMIGNSINHQDNRLEHELNHRGLSLQDDDTASINSYGSHKNRPF KDESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDE YPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSL ALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVI VMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFN VLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAM NFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGS FFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRW RPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSS ECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVG RVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGIN DVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGIT FLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQY IRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKG NPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPS DAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAA AAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVE SDGFVTKNGHKVVIHSRSPSITSRTADV" misc_feature 690..1544 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1899..2456 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2661..3296 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3372..4136 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4146..4961 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4929..5087 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4974..4985 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5109..5861 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5892..6035 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gaggtgccgc aatatggtcg caagaaaaaa caaaaagaaa 421 tccgatatga tgacgaggac gaggatgaag gtccacaacc ggatcctaca cttgaacagg 481 gtgtgccaat acctgttcga ctgcagggca gcttccctcc ggaattggcc tccactcccc 541 tcgaggatat cgatcccttc tacagcaata tactgacatt cgtagttgta agcaaaggaa 601 aagatatttt tcgcttttct gcatcaaaag caatgtggct gctcgatcca ttcaatccga 661 tacgtcgtgt ggccatttac attttagtgc atccactatt ttcgttattc atcattacca 721 caattctcgt caactgcatc ctgatgataa tgccgacaac gcccacagtt gagtccactg 781 aggtgatatt caccggaatc tacacatttg aatcagctgt taaagtgatg gcacgaggtt 841 tcattttatg cccgtttacg tatcttagag atgcatggaa ttggctggac ttcgtagtaa 901 tagctttagc ttatgtgacc atgggtatag atttaggtaa tcttgcagcc ttgcgaacgt 961 ttagggtgct gcgagcgctt aaaaccgtag ccattgtgcc aggcttgaag accattgtcg 1021 gtgcggtcat cgaatctgta aagaatctgc gcgatgtgat aattttgaca atgttctccc 1081 tgtcggtgtt cgcgctgatg gggctgcaaa tctacatggg cgtgctaacg cagaagtgca 1141 tcaagaagtt cccgctggac ggctcctggg gcaacctgac cgacgagaac tgggcctatc 1201 acaatagcaa caactctaat tggtattcgg aagacgacgg tatatccttt ccgttgtgcg 1261 gtaatatctc tggagcgggg caatgtgaag acgattacgt gtgtctgcag gggttcgggc 1321 cgaacccgaa ctatggctac accagtttcg attcgttcgg ttgggcgttt ctgtccgcct 1381 tccggctgat gacgcaggac ttctgggagg atctgtatca gctggtgttg cgtgccgcag 1441 gaccctggca catgctgttc tttatagtca tcatcttcct aggttcattc tatcttgtga 1501 atttgatttt ggccattgtt gccatgtcgt atgacgaatt gcaaaagaag gccgaagaag 1561 aagaggctgc cgaagaggag gcgatacgtg aagccgagga agctgccgcc gccaaagcag 1621 ccaagctgga ggagcgcgcc aatgcgcagg cccaggccgc cgccgatgca gctgccgccg 1681 aagaggcggc tcttcatccg gagatggcca agagtccgac gtattcgtgc atcagctatg 1741 agctatttgt gggcggcgag aaaggcaacg atgacaacaa caaggagaag atgtccatac 1801 gcagcgttga ggtggagtcg gagtcggtga gcgttataca aagacaacca gcacctacca 1861 cagcacacca agctaccaaa gttcgtaaag tgagcacgac atccttatcc ttacctggtt 1921 caccgtttaa catacgcagg ggatcacgta gttctcacaa gtacacgatc cggaatggac 1981 gtggacgctt tggtataccc ggcagcgatc gcaagccgtt ggtattgtca acatatcagg 2041 atgctcagca gcacttgccc tatgccgatg attcgaacgc tgttacgccc atgtccgagg 2101 agaacggtgc cattatagtg cccgtttatt atggaaatct aggctccagg cattcatcgt 2161 atacttcgca tcagtccaga atatcgtata cctcacatgg cgatctattg ggcggcatgg 2221 ccgtcatggg cgtcagcaca atgaccaagg agagcaaatt gcgaaatcgc aactcacgca 2281 atcaatcagt gggcgccacc aatggcggca ccacctgcct ggaccccaat cacaaggtcg 2341 agcatcgcga cttcgaaatc ggtctggagt gcacggacga agctggcaag attaaacatc 2401 atgacaatcc ttttatcgag cccgtccaga cacaaacggt agtcgacatg aaagatgtga 2461 tggtactgaa tgacattatc gaacaggccg ctggtcggca cagtcgggct agtgatcgcg 2521 gtgaggacga tgatgaggat gggccgacat taaaagacaa ggccctcgaa gcgctaatga 2581 aaggcatcga agtgttttgt gtgtgggact gttgctgggt ttggttgaaa ttgcaggagt 2641 ggatatcgct gatcgtcttc gatccctttg tcgagctctt catcacgctg tgcattgtgg 2701 tcaacacgat gttcatggcc atggaccatc acgacatgaa caaggagatg gaacgcatcc 2761 ttaagtgcgg aaattatttc ttcacggcaa cattcgccat tgaggcaacc atgaaactgt 2821 gcgccatgag ccccaaatac tatttccagg agggctggaa catctttgac ttcatcattg 2881 tggcactctc attgctggag ctgggcctcg agggcgttca gggcctctcc gtcttgcgtt 2941 cgtttcgttt gctgcgtgta ttcaaattgg ccaagtcctg gccaacactt aatttactca 3001 tttcgattat gggacgcacc atgggcgctt tgggtaatct gacatttgta ctttgcatta 3061 tcatcttcat ctttgcggtg atgggaatgc aactgttcgg aaagaattat catgataaca 3121 aggatcgctt cccggacggt gacctgcccc gctggaactt caccgacttc atgcacagct 3181 tcatgatcgt gtttcgggtg ctatgcggcg agtggatcga gtccatgtgg gactgtatgc 3241 acgtgggcga tgtatcgtgc attccattct tcttggccac cgttgtcatc ggcaatttag 3301 tggttcttaa ccttttctta gccctgcttt tgtcaaattt tggttcatct agcttatcag 3361 cgccgacagc cgataacgat accaataaaa tagccgaggc cttcaatcga attgggcgat 3421 ttaaaagttg ggttaagcgt aatattgctg attgtttcaa gttaatacgt aacaaattga 3481 caaatcaaat aagtgatcaa ccatcaggca aaggcgtttg tcgttgtata tctgcagagc 3541 acggcgacaa cgagctggag ctgggccacg acgagatact cgccgacggg ctcatcaaga 3601 agggcatcaa ggaggcgaca cagctggagg tggccatcgg tgatggcatg gagttcacga 3661 tacacggcga catgaagaac aacaagccga agaaatccaa atatctaaat aacgcaacga 3721 tgattggcaa ctcaattaac caccaagaca atagactgga acacgagcta aaccatagag 3781 gtttgtcctt acaggacgac gacactgcca gcattaactc atatggtagc cataagaatc 3841 gaccattcaa ggatgagagc cacaagggca gcgccgagac gatggagggc gaggagaagc 3901 gggacgccag caaggaggat ttaggtatcg atgaggagct cgacgaggag ggcgaattgg 3961 aggagggccc gctcgacggc gatatcatca tacatgccaa cgatgaggat atactcgatg 4021 aatatccagc tgattgctgc cccgattcgt actataagaa atttccgatc ttagccggtg 4081 atgatgactc gccgttctgg caaggatggg gcaatttacg actgaaaact tttcaattaa 4141 ttgaaaataa atattttgaa acagctgtta tcactatgat tttaatgagt agcttagctt 4201 tggcattaga agatgtacat ctgccacaaa gacccatact gcaggatatt ttatactata 4261 tggacagaat atttacggtt atattcttct tggaaatgtt aatcaagtgg ctggcgctcg 4321 gcttcaaagt gtacttcacg aacgcgtggt gctggctcga tttcgtcatt gtcatggtat 4381 cgcttatcaa cttcgttgct tcacttgttg gagctggtgg tattcaagcc ttcaagacta 4441 tgcgaacgtt aagagcactg agaccactac gtgccatgtc ccgtatgcag ggcatgaggg 4501 tcgtcgttaa tgcgctggta caagctatac cgtccatctt caatgtgcta ttggtgtgtc 4561 taatattttg gctaattttt gccataatgg gtgtacagct ttttgctgga aaatatttta 4621 agtgcgagga catgaatggc acgaagctca gccacgagat cataccaaat cgcaatgcct 4681 gcgaaagcga gaactacacg tgggtgaatt cagcaatgaa tttcgatcat gtaggtaacg 4741 cgtatctgtg ccttttccaa gtggccacct tcaaaggctg gatacaaatc atgaacgatg 4801 ctatcgattc acgagaggtg gacaagcagc caattcgtga aacgaacatc tacatgtatt 4861 tatatttcgt attcttcatc atatttggat catttttcac actcaatctg ttcattggtg 4921 ttatcattga taattttaat gagcaaaaga aaaaagcagg tggatcatta gaaatgttca 4981 tgacagaaga tcagaaaaag tactataatg ctatgaaaaa gatgggctct aaaaaaccat 5041 taaaagccat tccaagacca aggtggcgtc cacaagcaat agtctttgaa atagtaaccg 5101 ataagaaatt cgatatagtc ataatgttat tcattggtct gaacatgttc accatgacac 5161 tcgatcgtta cgatgcgtcg gacacgtaca acgcggtcct tgactatctc aatgcgatat 5221 tcgtagttat tttcagttcc gaatgtctat taaaaatatt cgctttacga tatcactatt 5281 ttattgagcc atggaattta tttgatgtag tagttgtcat tttatccatc ttaggtctcg 5341 tacttagcga tattatcgag aaatacttcg tatcgccgac actgctccga gtggtgcgcg 5401 tggccaaagt gggtcgcgta ctgcgtctgg tgaagggcgc caagggtata cgaacgctgc 5461 tgttcgccct ggccatgtcg ctgccggcgc tgttcaacat ctgcctgctg ctgttcctgg 5521 tcatgttcat cttcgcgata ttcggcatgt cgttcttcat gcatgtgaag gagaagagcg 5581 gcatcaacga cgtctacaac ttcaagacgt tcggacagag catgatcctg ctctttcaga 5641 tgtctacctc agccggttgg gatggtgtac tcgacgccat tatcaatgag gaagcatgcg 5701 atccacccga caacgacaaa ggctatccgg gcaattgtgg ttcagcgacc gttggaataa 5761 cgtttctcct ctcataccta gttataagct ttttgatagt tattaatatg tacattgctg 5821 tcattctcga gaactatagt caggccaccg aggatgtgca ggagggtctc accgacgacg 5881 attacgatat gtactatgag atctggcaac agttcgatcc ggagggcacc cagtacatac 5941 gatacgacca gctgtccgag ttcctcgacg tgctggagcc cccgctccag attcacaagc 6001 ccaacaagta caaaatcata tcgatggaca tacccatctg tcgcggtgac ctcatgtact 6061 gtgtggacat actggacgca ctgaccaaag actttttcgc gcgcaaaggc aatcccattg 6121 aggagacggg cgagattggt gagattgccg ccaggccgga caccgagggc tacgagcccg 6181 tctcctccac cctctggcga cagcgggagg agtactgtgc ccgcctcatt caacatgcct 6241 ggcgcaagca taaaacgcgc gccgagggcg gtggtgcacc gtccgacgcg gaaggcgacg 6301 gccccgaaga tggtgatgcg ggtggcggtg gcggggcggc gctgatgctg ggtgttctgg 6361 atgttccaga tgctgctggc gatgcagcaa ccactggctc ccatgacggg gcaacggcac 6421 tcgatcccga gaccgatcca tcgggagtac cggcggcagc ggcggtggcc ccacagccag 6481 ccggtgacgg cggcgaggga ccggatggag gagcaacagc cgatccgcac gagagcaatg 6541 taaatagtcc gacgatggac ggcgcgacgg cgggcagccc gggcgcaggg agcgctggca 6601 gcactggccg acagacggcc gttctcgtgg agagcgatgg gtttgtgacc aagaacgggc 6661 acaaggttgt aatacactcg cgttcgccga gcataacgtc gcgcacggcg gatgtctgag 6721 ccaggcctcg cccccccctc caagatgcac gcgagtatta ggtgcaggtg cagatgcagt 6781 gcagtggtgg tgccacaaca acaacaacaa caacagcagg tgccactggt agctgcaatt 6841 gcaactgcaa cagcagcaac aggaagaa