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LOCUS XM_022361487 6868 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X7, mRNA. ACCESSION XM_022361487 VERSION XM_022361487.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022361487.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6868 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6868 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 47 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6719 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X7" /protein_id="XP_022217179.2" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLEDIDPFYSNIL TFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMI MPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDFVVIALAYVTM GIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFAL MGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDDGISFPLCGNIS GAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRAAGP WHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIREAEEAAAAKA AKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEKGNDDNNKEKM SIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNIRRGSRSSHKYT IRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNL GSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRNQSVGATNGGTT CLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQA AGRHSRASDRGVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLKLQE WISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIEATM KLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPT LNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPRWNF TDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLALLLS NFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSG ERTNQISWIWSEEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIHGDM KNNKPKKSKYLNNATMIGNSINHQDNRLEHELNHRGLSLQDDDTASINSYGSHKNRPF KDESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDILDE YPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSL ALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVI VMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFN VLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAM NFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGS FFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRW RPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSS ECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVG RVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGIN DVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGIT FLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQY IRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKG NPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGGAPS DAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGVPAA AAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAVLVE SDGFVTKNGHKVVIHSRSPSITSRTADV" misc_feature 657..1511 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1866..2423 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2652..3287 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3363..4136 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4146..4961 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4929..5087 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4974..4985 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5109..5861 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5892..6035 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gaggtgatcc gatatgatga cgaggacgag gatgaaggtc 421 cacaaccgga tcctacactt gaacagggtg tgccaatacc tgttcgactg cagggcagct 481 tccctccgga attggcctcc actcccctcg aggatatcga tcccttctac agcaatatac 541 tgacattcgt agttgtaagc aaaggaaaag atatttttcg cttttctgca tcaaaagcaa 601 tgtggctgct cgatccattc aatccgatac gtcgtgtggc catttacatt ttagtgcatc 661 cactattttc gttattcatc attaccacaa ttctcgtcaa ctgcatcctg atgataatgc 721 cgacaacgcc cacagttgag tccactgagg tgatattcac cggaatctac acatttgaat 781 cagctgttaa agtgatggca cgaggtttca ttttatgccc gtttacgtat cttagagatg 841 catggaattg gctggacttc gtagtaatag ctttagctta tgtgaccatg ggtatagatt 901 taggtaatct tgcagccttg cgaacgttta gggtgctgcg agcgcttaaa accgtagcca 961 ttgtgccagg cttgaagacc attgtcggtg cggtcatcga atctgtaaag aatctgcgcg 1021 atgtgataat tttgacaatg ttctccctgt cggtgttcgc gctgatgggg ctgcaaatct 1081 acatgggcgt gctaacgcag aagtgcatca agaagttccc gctggacggc tcctggggca 1141 acctgaccga cgagaactgg gcctatcaca atagcaacaa ctctaattgg tattcggaag 1201 acgacggtat atcctttccg ttgtgcggta atatctctgg agcggggcaa tgtgaagacg 1261 attacgtgtg tctgcagggg ttcgggccga acccgaacta tggctacacc agtttcgatt 1321 cgttcggttg ggcgtttctg tccgccttcc ggctgatgac gcaggacttc tgggaggatc 1381 tgtatcagct ggtgttgcgt gccgcaggac cctggcacat gctgttcttt atagtcatca 1441 tcttcctagg ttcattctat cttgtgaatt tgattttggc cattgttgcc atgtcgtatg 1501 acgaattgca aaagaaggcc gaagaagaag aggctgccga agaggaggcg atacgtgaag 1561 ccgaggaagc tgccgccgcc aaagcagcca agctggagga gcgcgccaat gcgcaggccc 1621 aggccgccgc cgatgcagct gccgccgaag aggcggctct tcatccggag atggccaaga 1681 gtccgacgta ttcgtgcatc agctatgagc tatttgtggg cggcgagaaa ggcaacgatg 1741 acaacaacaa ggagaagatg tccatacgca gcgttgaggt ggagtcggag tcggtgagcg 1801 ttatacaaag acaaccagca cctaccacag cacaccaagc taccaaagtt cgtaaagtga 1861 gcacgacatc cttatcctta cctggttcac cgtttaacat acgcagggga tcacgtagtt 1921 ctcacaagta cacgatccgg aatggacgtg gacgctttgg tatacccggc agcgatcgca 1981 agccgttggt attgtcaaca tatcaggatg ctcagcagca cttgccctat gccgatgatt 2041 cgaacgctgt tacgcccatg tccgaggaga acggtgccat tatagtgccc gtttattatg 2101 gaaatctagg ctccaggcat tcatcgtata cttcgcatca gtccagaata tcgtatacct 2161 cacatggcga tctattgggc ggcatggccg tcatgggcgt cagcacaatg accaaggaga 2221 gcaaattgcg aaatcgcaac tcacgcaatc aatcagtggg cgccaccaat ggcggcacca 2281 cctgcctgga ccccaatcac aaggtcgagc atcgcgactt cgaaatcggt ctggagtgca 2341 cggacgaagc tggcaagatt aaacatcatg acaatccttt tatcgagccc gtccagacac 2401 aaacggtagt cgacatgaaa gatgtgatgg tactgaatga cattatcgaa caggccgctg 2461 gtcggcacag tcgggctagt gatcgcggtg tctccgttta ctatttccca acagaggacg 2521 atgatgagga tgggccgaca ttaaaagaca aggccctcga agcgctaatg aaaggcatcg 2581 aagtgttttg tgtgtgggac tgttgctggg tttggttgaa attgcaggag tggatatcgc 2641 tgatcgtctt cgatcccttt gtcgagctct tcatcacgct gtgcattgtg gtcaacacga 2701 tgttcatggc catggaccat cacgacatga acaaggagat ggaacgcatc cttaagtgcg 2761 gaaattattt cttcacggca acattcgcca ttgaggcaac catgaaactg tgcgccatga 2821 gccccaaata ctatttccag gagggctgga acatctttga cttcatcatt gtggcactct 2881 cattgctgga gctgggcctc gagggcgttc agggcctctc cgtcttgcgt tcgtttcgtt 2941 tgctgcgtgt attcaaattg gccaagtcct ggccaacact taatttactc atttcgatta 3001 tgggacgcac catgggcgct ttgggtaatc tgacatttgt actttgcatt atcatcttca 3061 tctttgcggt gatgggaatg caactgttcg gaaagaatta tcatgataac aaggatcgct 3121 tcccggacgg tgacctgccc cgctggaact tcaccgactt catgcacagc ttcatgatcg 3181 tgtttcgggt gctatgcggc gagtggatcg agtccatgtg ggactgtatg cacgtgggcg 3241 atgtatcgtg cattccattc ttcttggcca ccgttgtcat cggcaattta gtggttctta 3301 accttttctt agccctgctt ttgtcaaatt ttggttcatc tagcttatca gcgccgacag 3361 ccgataacga taccaataaa atagccgagg ccttcaatcg aattgggcga tttaaaagtt 3421 gggttaagcg taatattgct gattgtttca agttaatacg taacaaattg acaaatcaaa 3481 taagtgatca accatcaggt gagaggacca accagatcag ttggatttgg agcgaagagc 3541 acggcgacaa cgagctggag ctgggccacg acgagatact cgccgacggg ctcatcaaga 3601 agggcatcaa ggaggcgaca cagctggagg tggccatcgg tgatggcatg gagttcacga 3661 tacacggcga catgaagaac aacaagccga agaaatccaa atatctaaat aacgcaacga 3721 tgattggcaa ctcaattaac caccaagaca atagactgga acacgagcta aaccatagag 3781 gtttgtcctt acaggacgac gacactgcca gcattaactc atatggtagc cataagaatc 3841 gaccattcaa ggatgagagc cacaagggca gcgccgagac gatggagggc gaggagaagc 3901 gggacgccag caaggaggat ttaggtatcg atgaggagct cgacgaggag ggcgaattgg 3961 aggagggccc gctcgacggc gatatcatca tacatgccaa cgatgaggat atactcgatg 4021 aatatccagc tgattgctgc cccgattcgt actataagaa atttccgatc ttagccggtg 4081 atgatgactc gccgttctgg caaggatggg gcaatttacg actgaaaact tttcaattaa 4141 ttgaaaataa atattttgaa acagctgtta tcactatgat tttaatgagt agcttagctt 4201 tggcattaga agatgtacat ctgccacaaa gacccatact gcaggatatt ttatactata 4261 tggacagaat atttacggtt atattcttct tggaaatgtt aatcaagtgg ctggcgctcg 4321 gcttcaaagt gtacttcacg aacgcgtggt gctggctcga tttcgtcatt gtcatggtat 4381 cgcttatcaa cttcgttgct tcacttgttg gagctggtgg tattcaagcc ttcaagacta 4441 tgcgaacgtt aagagcactg agaccactac gtgccatgtc ccgtatgcag ggcatgaggg 4501 tcgtcgttaa tgcgctggta caagctatac cgtccatctt caatgtgcta ttggtgtgtc 4561 taatattttg gctaattttt gccataatgg gtgtacagct ttttgctgga aaatatttta 4621 agtgcgagga catgaatggc acgaagctca gccacgagat cataccaaat cgcaatgcct 4681 gcgaaagcga gaactacacg tgggtgaatt cagcaatgaa tttcgatcat gtaggtaacg 4741 cgtatctgtg ccttttccaa gtggccacct tcaaaggctg gatacaaatc atgaacgatg 4801 ctatcgattc acgagaggtg gacaagcagc caattcgtga aacgaacatc tacatgtatt 4861 tatatttcgt attcttcatc atatttggat catttttcac actcaatctg ttcattggtg 4921 ttatcattga taattttaat gagcaaaaga aaaaagcagg tggatcatta gaaatgttca 4981 tgacagaaga tcagaaaaag tactataatg ctatgaaaaa gatgggctct aaaaaaccat 5041 taaaagccat tccaagacca aggtggcgtc cacaagcaat agtctttgaa atagtaaccg 5101 ataagaaatt cgatatagtc ataatgttat tcattggtct gaacatgttc accatgacac 5161 tcgatcgtta cgatgcgtcg gacacgtaca acgcggtcct tgactatctc aatgcgatat 5221 tcgtagttat tttcagttcc gaatgtctat taaaaatatt cgctttacga tatcactatt 5281 ttattgagcc atggaattta tttgatgtag tagttgtcat tttatccatc ttaggtctcg 5341 tacttagcga tattatcgag aaatacttcg tatcgccgac actgctccga gtggtgcgcg 5401 tggccaaagt gggtcgcgta ctgcgtctgg tgaagggcgc caagggtata cgaacgctgc 5461 tgttcgccct ggccatgtcg ctgccggcgc tgttcaacat ctgcctgctg ctgttcctgg 5521 tcatgttcat cttcgcgata ttcggcatgt cgttcttcat gcatgtgaag gagaagagcg 5581 gcatcaacga cgtctacaac ttcaagacgt tcggacagag catgatcctg ctctttcaga 5641 tgtctacctc agccggttgg gatggtgtac tcgacgccat tatcaatgag gaagcatgcg 5701 atccacccga caacgacaaa ggctatccgg gcaattgtgg ttcagcgacc gttggaataa 5761 cgtttctcct ctcataccta gttataagct ttttgatagt tattaatatg tacattgctg 5821 tcattctcga gaactatagt caggccaccg aggatgtgca ggagggtctc accgacgacg 5881 attacgatat gtactatgag atctggcaac agttcgatcc ggagggcacc cagtacatac 5941 gatacgacca gctgtccgag ttcctcgacg tgctggagcc cccgctccag attcacaagc 6001 ccaacaagta caaaatcata tcgatggaca tacccatctg tcgcggtgac ctcatgtact 6061 gtgtggacat actggacgca ctgaccaaag actttttcgc gcgcaaaggc aatcccattg 6121 aggagacggg cgagattggt gagattgccg ccaggccgga caccgagggc tacgagcccg 6181 tctcctccac cctctggcga cagcgggagg agtactgtgc ccgcctcatt caacatgcct 6241 ggcgcaagca taaaacgcgc gccgagggcg gtggtgcacc gtccgacgcg gaaggcgacg 6301 gccccgaaga tggtgatgcg ggtggcggtg gcggggcggc gctgatgctg ggtgttctgg 6361 atgttccaga tgctgctggc gatgcagcaa ccactggctc ccatgacggg gcaacggcac 6421 tcgatcccga gaccgatcca tcgggagtac cggcggcagc ggcggtggcc ccacagccag 6481 ccggtgacgg cggcgaggga ccggatggag gagcaacagc cgatccgcac gagagcaatg 6541 taaatagtcc gacgatggac ggcgcgacgg cgggcagccc gggcgcaggg agcgctggca 6601 gcactggccg acagacggcc gttctcgtgg agagcgatgg gtttgtgacc aagaacgggc 6661 acaaggttgt aatacactcg cgttcgccga gcataacgtc gcgcacggcg gatgtctgag 6721 ccaggcctcg cccccccctc caagatgcac gcgagtatta ggtgcaggtg cagatgcagt 6781 gcagtggtgg tgccacaaca acaacaacaa caacagcagg tgccactggt agctgcaatt 6841 gcaactgcaa cagcagcaac aggaagaa