PREDICTED: Drosophila obscura sodium channel protein para
LOCUS XM_022361485 6877 bp mRNA linear INV 14-MAY-2021
(LOC111070739), transcript variant X4, mRNA.
ACCESSION XM_022361485
VERSION XM_022361485.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022361485.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6877
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..6877
/gene="LOC111070739"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 45 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 7 samples with support for all annotated
introns"
/db_xref="GeneID:111070739"
CDS 237..6728
/gene="LOC111070739"
/codon_start=1
/product="sodium channel protein para isoform X4"
/protein_id="XP_022217177.2"
/db_xref="GeneID:111070739"
/translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK
RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL
EDIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFII
TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD
FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII
LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDD
GISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED
LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI
REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE
KGNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNI
RRGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENG
AIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRN
QSVGATNGGTTCLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKD
VMVLNDIIEQAAGRHSRASDRGEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLK
LQEWISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIE
ATMKLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKS
WPTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPR
WNFTDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLAL
LLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQ
PSGERTNQISWIWSEEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIH
GDMKNNKPKKSKYLNNATMIGNSINHQDNRLEHELNHRGLSLQDDDTASINSYGSHKN
RPFKDESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDI
LDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILM
SSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLD
FVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPS
IFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVN
SAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFII
FGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPR
PRWRPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVI
FSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVA
KVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKS
GINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATV
GITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEG
TQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFA
RKGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGG
APSDAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGV
PAAAAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAV
LVESDGFVTKNGHKVVIHSRSPSITSRTADV"
misc_feature 690..1544
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 1899..2456
/gene="LOC111070739"
/note="Cytoplasmic domain of voltage-gated Na+ ion
channel; Region: Na_trans_cytopl; pfam11933"
/db_xref="CDD:463401"
misc_feature 2661..3296
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 3372..4145
/gene="LOC111070739"
/note="Sodium ion transport-associated; Region:
Na_trans_assoc; pfam06512"
/db_xref="CDD:461936"
misc_feature 4155..4970
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 4938..5096
/gene="LOC111070739"
/note="Inactivation gate of the voltage-gated sodium
channel alpha subunits; Region: Na_channel_gate; cd13433"
/db_xref="CDD:240441"
misc_feature 4983..4994
/gene="LOC111070739"
/note="putative hydrophobic latch; other site"
/db_xref="CDD:240441"
misc_feature 5118..5870
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 5901..6044
/gene="LOC111070739"
/note="Voltage-dependent L-type calcium channel,
IQ-associated; Region: GPHH; pfam16905"
/db_xref="CDD:465306"
ORIGIN
1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca
61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg
121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac
181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga
241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg
301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg
361 aaagaaagag agccgaggga gaggtgccgc aatatggtcg caagaaaaaa caaaaagaaa
421 tccgatatga tgacgaggac gaggatgaag gtccacaacc ggatcctaca cttgaacagg
481 gtgtgccaat acctgttcga ctgcagggca gcttccctcc ggaattggcc tccactcccc
541 tcgaggatat cgatcccttc tacagcaata tactgacatt cgtagttgta agcaaaggaa
601 aagatatttt tcgcttttct gcatcaaaag caatgtggct gctcgatcca ttcaatccga
661 tacgtcgtgt ggccatttac attttagtgc atccactatt ttcgttattc atcattacca
721 caattctcgt caactgcatc ctgatgataa tgccgacaac gcccacagtt gagtccactg
781 aggtgatatt caccggaatc tacacatttg aatcagctgt taaagtgatg gcacgaggtt
841 tcattttatg cccgtttacg tatcttagag atgcatggaa ttggctggac ttcgtagtaa
901 tagctttagc ttatgtgacc atgggtatag atttaggtaa tcttgcagcc ttgcgaacgt
961 ttagggtgct gcgagcgctt aaaaccgtag ccattgtgcc aggcttgaag accattgtcg
1021 gtgcggtcat cgaatctgta aagaatctgc gcgatgtgat aattttgaca atgttctccc
1081 tgtcggtgtt cgcgctgatg gggctgcaaa tctacatggg cgtgctaacg cagaagtgca
1141 tcaagaagtt cccgctggac ggctcctggg gcaacctgac cgacgagaac tgggcctatc
1201 acaatagcaa caactctaat tggtattcgg aagacgacgg tatatccttt ccgttgtgcg
1261 gtaatatctc tggagcgggg caatgtgaag acgattacgt gtgtctgcag gggttcgggc
1321 cgaacccgaa ctatggctac accagtttcg attcgttcgg ttgggcgttt ctgtccgcct
1381 tccggctgat gacgcaggac ttctgggagg atctgtatca gctggtgttg cgtgccgcag
1441 gaccctggca catgctgttc tttatagtca tcatcttcct aggttcattc tatcttgtga
1501 atttgatttt ggccattgtt gccatgtcgt atgacgaatt gcaaaagaag gccgaagaag
1561 aagaggctgc cgaagaggag gcgatacgtg aagccgagga agctgccgcc gccaaagcag
1621 ccaagctgga ggagcgcgcc aatgcgcagg cccaggccgc cgccgatgca gctgccgccg
1681 aagaggcggc tcttcatccg gagatggcca agagtccgac gtattcgtgc atcagctatg
1741 agctatttgt gggcggcgag aaaggcaacg atgacaacaa caaggagaag atgtccatac
1801 gcagcgttga ggtggagtcg gagtcggtga gcgttataca aagacaacca gcacctacca
1861 cagcacacca agctaccaaa gttcgtaaag tgagcacgac atccttatcc ttacctggtt
1921 caccgtttaa catacgcagg ggatcacgta gttctcacaa gtacacgatc cggaatggac
1981 gtggacgctt tggtataccc ggcagcgatc gcaagccgtt ggtattgtca acatatcagg
2041 atgctcagca gcacttgccc tatgccgatg attcgaacgc tgttacgccc atgtccgagg
2101 agaacggtgc cattatagtg cccgtttatt atggaaatct aggctccagg cattcatcgt
2161 atacttcgca tcagtccaga atatcgtata cctcacatgg cgatctattg ggcggcatgg
2221 ccgtcatggg cgtcagcaca atgaccaagg agagcaaatt gcgaaatcgc aactcacgca
2281 atcaatcagt gggcgccacc aatggcggca ccacctgcct ggaccccaat cacaaggtcg
2341 agcatcgcga cttcgaaatc ggtctggagt gcacggacga agctggcaag attaaacatc
2401 atgacaatcc ttttatcgag cccgtccaga cacaaacggt agtcgacatg aaagatgtga
2461 tggtactgaa tgacattatc gaacaggccg ctggtcggca cagtcgggct agtgatcgcg
2521 gtgaggacga tgatgaggat gggccgacat taaaagacaa ggccctcgaa gcgctaatga
2581 aaggcatcga agtgttttgt gtgtgggact gttgctgggt ttggttgaaa ttgcaggagt
2641 ggatatcgct gatcgtcttc gatccctttg tcgagctctt catcacgctg tgcattgtgg
2701 tcaacacgat gttcatggcc atggaccatc acgacatgaa caaggagatg gaacgcatcc
2761 ttaagtgcgg aaattatttc ttcacggcaa cattcgccat tgaggcaacc atgaaactgt
2821 gcgccatgag ccccaaatac tatttccagg agggctggaa catctttgac ttcatcattg
2881 tggcactctc attgctggag ctgggcctcg agggcgttca gggcctctcc gtcttgcgtt
2941 cgtttcgttt gctgcgtgta ttcaaattgg ccaagtcctg gccaacactt aatttactca
3001 tttcgattat gggacgcacc atgggcgctt tgggtaatct gacatttgta ctttgcatta
3061 tcatcttcat ctttgcggtg atgggaatgc aactgttcgg aaagaattat catgataaca
3121 aggatcgctt cccggacggt gacctgcccc gctggaactt caccgacttc atgcacagct
3181 tcatgatcgt gtttcgggtg ctatgcggcg agtggatcga gtccatgtgg gactgtatgc
3241 acgtgggcga tgtatcgtgc attccattct tcttggccac cgttgtcatc ggcaatttag
3301 tggttcttaa ccttttctta gccctgcttt tgtcaaattt tggttcatct agcttatcag
3361 cgccgacagc cgataacgat accaataaaa tagccgaggc cttcaatcga attgggcgat
3421 ttaaaagttg ggttaagcgt aatattgctg attgtttcaa gttaatacgt aacaaattga
3481 caaatcaaat aagtgatcaa ccatcaggtg agaggaccaa ccagatcagt tggatttgga
3541 gcgaagagca cggcgacaac gagctggagc tgggccacga cgagatactc gccgacgggc
3601 tcatcaagaa gggcatcaag gaggcgacac agctggaggt ggccatcggt gatggcatgg
3661 agttcacgat acacggcgac atgaagaaca acaagccgaa gaaatccaaa tatctaaata
3721 acgcaacgat gattggcaac tcaattaacc accaagacaa tagactggaa cacgagctaa
3781 accatagagg tttgtcctta caggacgacg acactgccag cattaactca tatggtagcc
3841 ataagaatcg accattcaag gatgagagcc acaagggcag cgccgagacg atggagggcg
3901 aggagaagcg ggacgccagc aaggaggatt taggtatcga tgaggagctc gacgaggagg
3961 gcgaattgga ggagggcccg ctcgacggcg atatcatcat acatgccaac gatgaggata
4021 tactcgatga atatccagct gattgctgcc ccgattcgta ctataagaaa tttccgatct
4081 tagccggtga tgatgactcg ccgttctggc aaggatgggg caatttacga ctgaaaactt
4141 ttcaattaat tgaaaataaa tattttgaaa cagctgttat cactatgatt ttaatgagta
4201 gcttagcttt ggcattagaa gatgtacatc tgccacaaag acccatactg caggatattt
4261 tatactatat ggacagaata tttacggtta tattcttctt ggaaatgtta atcaagtggc
4321 tggcgctcgg cttcaaagtg tacttcacga acgcgtggtg ctggctcgat ttcgtcattg
4381 tcatggtatc gcttatcaac ttcgttgctt cacttgttgg agctggtggt attcaagcct
4441 tcaagactat gcgaacgtta agagcactga gaccactacg tgccatgtcc cgtatgcagg
4501 gcatgagggt cgtcgttaat gcgctggtac aagctatacc gtccatcttc aatgtgctat
4561 tggtgtgtct aatattttgg ctaatttttg ccataatggg tgtacagctt tttgctggaa
4621 aatattttaa gtgcgaggac atgaatggca cgaagctcag ccacgagatc ataccaaatc
4681 gcaatgcctg cgaaagcgag aactacacgt gggtgaattc agcaatgaat ttcgatcatg
4741 taggtaacgc gtatctgtgc cttttccaag tggccacctt caaaggctgg atacaaatca
4801 tgaacgatgc tatcgattca cgagaggtgg acaagcagcc aattcgtgaa acgaacatct
4861 acatgtattt atatttcgta ttcttcatca tatttggatc atttttcaca ctcaatctgt
4921 tcattggtgt tatcattgat aattttaatg agcaaaagaa aaaagcaggt ggatcattag
4981 aaatgttcat gacagaagat cagaaaaagt actataatgc tatgaaaaag atgggctcta
5041 aaaaaccatt aaaagccatt ccaagaccaa ggtggcgtcc acaagcaata gtctttgaaa
5101 tagtaaccga taagaaattc gatatagtca taatgttatt cattggtctg aacatgttca
5161 ccatgacact cgatcgttac gatgcgtcgg acacgtacaa cgcggtcctt gactatctca
5221 atgcgatatt cgtagttatt ttcagttccg aatgtctatt aaaaatattc gctttacgat
5281 atcactattt tattgagcca tggaatttat ttgatgtagt agttgtcatt ttatccatct
5341 taggtctcgt acttagcgat attatcgaga aatacttcgt atcgccgaca ctgctccgag
5401 tggtgcgcgt ggccaaagtg ggtcgcgtac tgcgtctggt gaagggcgcc aagggtatac
5461 gaacgctgct gttcgccctg gccatgtcgc tgccggcgct gttcaacatc tgcctgctgc
5521 tgttcctggt catgttcatc ttcgcgatat tcggcatgtc gttcttcatg catgtgaagg
5581 agaagagcgg catcaacgac gtctacaact tcaagacgtt cggacagagc atgatcctgc
5641 tctttcagat gtctacctca gccggttggg atggtgtact cgacgccatt atcaatgagg
5701 aagcatgcga tccacccgac aacgacaaag gctatccggg caattgtggt tcagcgaccg
5761 ttggaataac gtttctcctc tcatacctag ttataagctt tttgatagtt attaatatgt
5821 acattgctgt cattctcgag aactatagtc aggccaccga ggatgtgcag gagggtctca
5881 ccgacgacga ttacgatatg tactatgaga tctggcaaca gttcgatccg gagggcaccc
5941 agtacatacg atacgaccag ctgtccgagt tcctcgacgt gctggagccc ccgctccaga
6001 ttcacaagcc caacaagtac aaaatcatat cgatggacat acccatctgt cgcggtgacc
6061 tcatgtactg tgtggacata ctggacgcac tgaccaaaga ctttttcgcg cgcaaaggca
6121 atcccattga ggagacgggc gagattggtg agattgccgc caggccggac accgagggct
6181 acgagcccgt ctcctccacc ctctggcgac agcgggagga gtactgtgcc cgcctcattc
6241 aacatgcctg gcgcaagcat aaaacgcgcg ccgagggcgg tggtgcaccg tccgacgcgg
6301 aaggcgacgg ccccgaagat ggtgatgcgg gtggcggtgg cggggcggcg ctgatgctgg
6361 gtgttctgga tgttccagat gctgctggcg atgcagcaac cactggctcc catgacgggg
6421 caacggcact cgatcccgag accgatccat cgggagtacc ggcggcagcg gcggtggccc
6481 cacagccagc cggtgacggc ggcgagggac cggatggagg agcaacagcc gatccgcacg
6541 agagcaatgt aaatagtccg acgatggacg gcgcgacggc gggcagcccg ggcgcaggga
6601 gcgctggcag cactggccga cagacggccg ttctcgtgga gagcgatggg tttgtgacca
6661 agaacgggca caaggttgta atacactcgc gttcgccgag cataacgtcg cgcacggcgg
6721 atgtctgagc caggcctcgc ccccccctcc aagatgcacg cgagtattag gtgcaggtgc
6781 agatgcagtg cagtggtggt gccacaacaa caacaacaac aacagcaggt gccactggta
6841 gctgcaattg caactgcaac agcagcaaca ggaagaa