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LOCUS XM_022361485 6877 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X4, mRNA. ACCESSION XM_022361485 VERSION XM_022361485.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022361485.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6877 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6877 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 45 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6728 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X4" /protein_id="XP_022217177.2" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL EDIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFII TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDD GISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE KGNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNI RRGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENG AIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRN QSVGATNGGTTCLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKD VMVLNDIIEQAAGRHSRASDRGEDDDEDGPTLKDKALEALMKGIEVFCVWDCCWVWLK LQEWISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYFFTATFAIE ATMKLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKS WPTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDRFPDGDLPR WNFTDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLVVLNLFLAL LLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQ PSGERTNQISWIWSEEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGMEFTIH GDMKNNKPKKSKYLNNATMIGNSINHQDNRLEHELNHRGLSLQDDDTASINSYGSHKN RPFKDESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHANDEDI LDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILM SSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLD FVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPS IFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVN SAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFII FGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPR PRWRPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVI FSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVA KVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKS GINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATV GITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEG TQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFA RKGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTRAEGGG APSDAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDPETDPSGV PAAAAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTGRQTAV LVESDGFVTKNGHKVVIHSRSPSITSRTADV" misc_feature 690..1544 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1899..2456 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2661..3296 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3372..4145 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4155..4970 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4938..5096 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4983..4994 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5118..5870 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5901..6044 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gaggtgccgc aatatggtcg caagaaaaaa caaaaagaaa 421 tccgatatga tgacgaggac gaggatgaag gtccacaacc ggatcctaca cttgaacagg 481 gtgtgccaat acctgttcga ctgcagggca gcttccctcc ggaattggcc tccactcccc 541 tcgaggatat cgatcccttc tacagcaata tactgacatt cgtagttgta agcaaaggaa 601 aagatatttt tcgcttttct gcatcaaaag caatgtggct gctcgatcca ttcaatccga 661 tacgtcgtgt ggccatttac attttagtgc atccactatt ttcgttattc atcattacca 721 caattctcgt caactgcatc ctgatgataa tgccgacaac gcccacagtt gagtccactg 781 aggtgatatt caccggaatc tacacatttg aatcagctgt taaagtgatg gcacgaggtt 841 tcattttatg cccgtttacg tatcttagag atgcatggaa ttggctggac ttcgtagtaa 901 tagctttagc ttatgtgacc atgggtatag atttaggtaa tcttgcagcc ttgcgaacgt 961 ttagggtgct gcgagcgctt aaaaccgtag ccattgtgcc aggcttgaag accattgtcg 1021 gtgcggtcat cgaatctgta aagaatctgc gcgatgtgat aattttgaca atgttctccc 1081 tgtcggtgtt cgcgctgatg gggctgcaaa tctacatggg cgtgctaacg cagaagtgca 1141 tcaagaagtt cccgctggac ggctcctggg gcaacctgac cgacgagaac tgggcctatc 1201 acaatagcaa caactctaat tggtattcgg aagacgacgg tatatccttt ccgttgtgcg 1261 gtaatatctc tggagcgggg caatgtgaag acgattacgt gtgtctgcag gggttcgggc 1321 cgaacccgaa ctatggctac accagtttcg attcgttcgg ttgggcgttt ctgtccgcct 1381 tccggctgat gacgcaggac ttctgggagg atctgtatca gctggtgttg cgtgccgcag 1441 gaccctggca catgctgttc tttatagtca tcatcttcct aggttcattc tatcttgtga 1501 atttgatttt ggccattgtt gccatgtcgt atgacgaatt gcaaaagaag gccgaagaag 1561 aagaggctgc cgaagaggag gcgatacgtg aagccgagga agctgccgcc gccaaagcag 1621 ccaagctgga ggagcgcgcc aatgcgcagg cccaggccgc cgccgatgca gctgccgccg 1681 aagaggcggc tcttcatccg gagatggcca agagtccgac gtattcgtgc atcagctatg 1741 agctatttgt gggcggcgag aaaggcaacg atgacaacaa caaggagaag atgtccatac 1801 gcagcgttga ggtggagtcg gagtcggtga gcgttataca aagacaacca gcacctacca 1861 cagcacacca agctaccaaa gttcgtaaag tgagcacgac atccttatcc ttacctggtt 1921 caccgtttaa catacgcagg ggatcacgta gttctcacaa gtacacgatc cggaatggac 1981 gtggacgctt tggtataccc ggcagcgatc gcaagccgtt ggtattgtca acatatcagg 2041 atgctcagca gcacttgccc tatgccgatg attcgaacgc tgttacgccc atgtccgagg 2101 agaacggtgc cattatagtg cccgtttatt atggaaatct aggctccagg cattcatcgt 2161 atacttcgca tcagtccaga atatcgtata cctcacatgg cgatctattg ggcggcatgg 2221 ccgtcatggg cgtcagcaca atgaccaagg agagcaaatt gcgaaatcgc aactcacgca 2281 atcaatcagt gggcgccacc aatggcggca ccacctgcct ggaccccaat cacaaggtcg 2341 agcatcgcga cttcgaaatc ggtctggagt gcacggacga agctggcaag attaaacatc 2401 atgacaatcc ttttatcgag cccgtccaga cacaaacggt agtcgacatg aaagatgtga 2461 tggtactgaa tgacattatc gaacaggccg ctggtcggca cagtcgggct agtgatcgcg 2521 gtgaggacga tgatgaggat gggccgacat taaaagacaa ggccctcgaa gcgctaatga 2581 aaggcatcga agtgttttgt gtgtgggact gttgctgggt ttggttgaaa ttgcaggagt 2641 ggatatcgct gatcgtcttc gatccctttg tcgagctctt catcacgctg tgcattgtgg 2701 tcaacacgat gttcatggcc atggaccatc acgacatgaa caaggagatg gaacgcatcc 2761 ttaagtgcgg aaattatttc ttcacggcaa cattcgccat tgaggcaacc atgaaactgt 2821 gcgccatgag ccccaaatac tatttccagg agggctggaa catctttgac ttcatcattg 2881 tggcactctc attgctggag ctgggcctcg agggcgttca gggcctctcc gtcttgcgtt 2941 cgtttcgttt gctgcgtgta ttcaaattgg ccaagtcctg gccaacactt aatttactca 3001 tttcgattat gggacgcacc atgggcgctt tgggtaatct gacatttgta ctttgcatta 3061 tcatcttcat ctttgcggtg atgggaatgc aactgttcgg aaagaattat catgataaca 3121 aggatcgctt cccggacggt gacctgcccc gctggaactt caccgacttc atgcacagct 3181 tcatgatcgt gtttcgggtg ctatgcggcg agtggatcga gtccatgtgg gactgtatgc 3241 acgtgggcga tgtatcgtgc attccattct tcttggccac cgttgtcatc ggcaatttag 3301 tggttcttaa ccttttctta gccctgcttt tgtcaaattt tggttcatct agcttatcag 3361 cgccgacagc cgataacgat accaataaaa tagccgaggc cttcaatcga attgggcgat 3421 ttaaaagttg ggttaagcgt aatattgctg attgtttcaa gttaatacgt aacaaattga 3481 caaatcaaat aagtgatcaa ccatcaggtg agaggaccaa ccagatcagt tggatttgga 3541 gcgaagagca cggcgacaac gagctggagc tgggccacga cgagatactc gccgacgggc 3601 tcatcaagaa gggcatcaag gaggcgacac agctggaggt ggccatcggt gatggcatgg 3661 agttcacgat acacggcgac atgaagaaca acaagccgaa gaaatccaaa tatctaaata 3721 acgcaacgat gattggcaac tcaattaacc accaagacaa tagactggaa cacgagctaa 3781 accatagagg tttgtcctta caggacgacg acactgccag cattaactca tatggtagcc 3841 ataagaatcg accattcaag gatgagagcc acaagggcag cgccgagacg atggagggcg 3901 aggagaagcg ggacgccagc aaggaggatt taggtatcga tgaggagctc gacgaggagg 3961 gcgaattgga ggagggcccg ctcgacggcg atatcatcat acatgccaac gatgaggata 4021 tactcgatga atatccagct gattgctgcc ccgattcgta ctataagaaa tttccgatct 4081 tagccggtga tgatgactcg ccgttctggc aaggatgggg caatttacga ctgaaaactt 4141 ttcaattaat tgaaaataaa tattttgaaa cagctgttat cactatgatt ttaatgagta 4201 gcttagcttt ggcattagaa gatgtacatc tgccacaaag acccatactg caggatattt 4261 tatactatat ggacagaata tttacggtta tattcttctt ggaaatgtta atcaagtggc 4321 tggcgctcgg cttcaaagtg tacttcacga acgcgtggtg ctggctcgat ttcgtcattg 4381 tcatggtatc gcttatcaac ttcgttgctt cacttgttgg agctggtggt attcaagcct 4441 tcaagactat gcgaacgtta agagcactga gaccactacg tgccatgtcc cgtatgcagg 4501 gcatgagggt cgtcgttaat gcgctggtac aagctatacc gtccatcttc aatgtgctat 4561 tggtgtgtct aatattttgg ctaatttttg ccataatggg tgtacagctt tttgctggaa 4621 aatattttaa gtgcgaggac atgaatggca cgaagctcag ccacgagatc ataccaaatc 4681 gcaatgcctg cgaaagcgag aactacacgt gggtgaattc agcaatgaat ttcgatcatg 4741 taggtaacgc gtatctgtgc cttttccaag tggccacctt caaaggctgg atacaaatca 4801 tgaacgatgc tatcgattca cgagaggtgg acaagcagcc aattcgtgaa acgaacatct 4861 acatgtattt atatttcgta ttcttcatca tatttggatc atttttcaca ctcaatctgt 4921 tcattggtgt tatcattgat aattttaatg agcaaaagaa aaaagcaggt ggatcattag 4981 aaatgttcat gacagaagat cagaaaaagt actataatgc tatgaaaaag atgggctcta 5041 aaaaaccatt aaaagccatt ccaagaccaa ggtggcgtcc acaagcaata gtctttgaaa 5101 tagtaaccga taagaaattc gatatagtca taatgttatt cattggtctg aacatgttca 5161 ccatgacact cgatcgttac gatgcgtcgg acacgtacaa cgcggtcctt gactatctca 5221 atgcgatatt cgtagttatt ttcagttccg aatgtctatt aaaaatattc gctttacgat 5281 atcactattt tattgagcca tggaatttat ttgatgtagt agttgtcatt ttatccatct 5341 taggtctcgt acttagcgat attatcgaga aatacttcgt atcgccgaca ctgctccgag 5401 tggtgcgcgt ggccaaagtg ggtcgcgtac tgcgtctggt gaagggcgcc aagggtatac 5461 gaacgctgct gttcgccctg gccatgtcgc tgccggcgct gttcaacatc tgcctgctgc 5521 tgttcctggt catgttcatc ttcgcgatat tcggcatgtc gttcttcatg catgtgaagg 5581 agaagagcgg catcaacgac gtctacaact tcaagacgtt cggacagagc atgatcctgc 5641 tctttcagat gtctacctca gccggttggg atggtgtact cgacgccatt atcaatgagg 5701 aagcatgcga tccacccgac aacgacaaag gctatccggg caattgtggt tcagcgaccg 5761 ttggaataac gtttctcctc tcatacctag ttataagctt tttgatagtt attaatatgt 5821 acattgctgt cattctcgag aactatagtc aggccaccga ggatgtgcag gagggtctca 5881 ccgacgacga ttacgatatg tactatgaga tctggcaaca gttcgatccg gagggcaccc 5941 agtacatacg atacgaccag ctgtccgagt tcctcgacgt gctggagccc ccgctccaga 6001 ttcacaagcc caacaagtac aaaatcatat cgatggacat acccatctgt cgcggtgacc 6061 tcatgtactg tgtggacata ctggacgcac tgaccaaaga ctttttcgcg cgcaaaggca 6121 atcccattga ggagacgggc gagattggtg agattgccgc caggccggac accgagggct 6181 acgagcccgt ctcctccacc ctctggcgac agcgggagga gtactgtgcc cgcctcattc 6241 aacatgcctg gcgcaagcat aaaacgcgcg ccgagggcgg tggtgcaccg tccgacgcgg 6301 aaggcgacgg ccccgaagat ggtgatgcgg gtggcggtgg cggggcggcg ctgatgctgg 6361 gtgttctgga tgttccagat gctgctggcg atgcagcaac cactggctcc catgacgggg 6421 caacggcact cgatcccgag accgatccat cgggagtacc ggcggcagcg gcggtggccc 6481 cacagccagc cggtgacggc ggcgagggac cggatggagg agcaacagcc gatccgcacg 6541 agagcaatgt aaatagtccg acgatggacg gcgcgacggc gggcagcccg ggcgcaggga 6601 gcgctggcag cactggccga cagacggccg ttctcgtgga gagcgatggg tttgtgacca 6661 agaacgggca caaggttgta atacactcgc gttcgccgag cataacgtcg cgcacggcgg 6721 atgtctgagc caggcctcgc ccccccctcc aagatgcacg cgagtattag gtgcaggtgc 6781 agatgcagtg cagtggtggt gccacaacaa caacaacaac aacagcaggt gccactggta 6841 gctgcaattg caactgcaac agcagcaaca ggaagaa