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LOCUS XM_022361483 6892 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X3, mRNA. ACCESSION XM_022361483 VERSION XM_022361483.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022361483.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6892 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6892 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 45 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6743 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X3" /protein_id="XP_022217175.2" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL EDIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFII TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDD GISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE KGNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNI RRGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENG AIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRN QSVGATNGGTTCLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKD VMVLNDIIEQAAGRHSRASDRGVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVW DCCWVWLKLQEWISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYF FTATFAIEATMKLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLL RVFKLAKSWPTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDR FPDGDLPRWNFTDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLV VLNLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNK LTNQISDQPSGKGVCRCISAEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGM EFTIHGDMKNNKPKKSKYLNNATMIGNSINHQDNRLEHELNHRGLSLQDDDTASINSY GSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHA NDEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVI TMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNA WCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALV QAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESEN YTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYF VFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPL KAIPRPRWRPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNA IFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLR VVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMH VKEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNC GSATVGITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQ FDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALT KDFFARKGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTR AEGGGAPSDAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDPET DPSGVPAAAAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTG RQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV" misc_feature 690..1544 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1899..2456 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2685..3320 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3396..4160 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4170..4985 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4953..5111 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 4998..5009 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5133..5885 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5916..6059 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gaggtgccgc aatatggtcg caagaaaaaa caaaaagaaa 421 tccgatatga tgacgaggac gaggatgaag gtccacaacc ggatcctaca cttgaacagg 481 gtgtgccaat acctgttcga ctgcagggca gcttccctcc ggaattggcc tccactcccc 541 tcgaggatat cgatcccttc tacagcaata tactgacatt cgtagttgta agcaaaggaa 601 aagatatttt tcgcttttct gcatcaaaag caatgtggct gctcgatcca ttcaatccga 661 tacgtcgtgt ggccatttac attttagtgc atccactatt ttcgttattc atcattacca 721 caattctcgt caactgcatc ctgatgataa tgccgacaac gcccacagtt gagtccactg 781 aggtgatatt caccggaatc tacacatttg aatcagctgt taaagtgatg gcacgaggtt 841 tcattttatg cccgtttacg tatcttagag atgcatggaa ttggctggac ttcgtagtaa 901 tagctttagc ttatgtgacc atgggtatag atttaggtaa tcttgcagcc ttgcgaacgt 961 ttagggtgct gcgagcgctt aaaaccgtag ccattgtgcc aggcttgaag accattgtcg 1021 gtgcggtcat cgaatctgta aagaatctgc gcgatgtgat aattttgaca atgttctccc 1081 tgtcggtgtt cgcgctgatg gggctgcaaa tctacatggg cgtgctaacg cagaagtgca 1141 tcaagaagtt cccgctggac ggctcctggg gcaacctgac cgacgagaac tgggcctatc 1201 acaatagcaa caactctaat tggtattcgg aagacgacgg tatatccttt ccgttgtgcg 1261 gtaatatctc tggagcgggg caatgtgaag acgattacgt gtgtctgcag gggttcgggc 1321 cgaacccgaa ctatggctac accagtttcg attcgttcgg ttgggcgttt ctgtccgcct 1381 tccggctgat gacgcaggac ttctgggagg atctgtatca gctggtgttg cgtgccgcag 1441 gaccctggca catgctgttc tttatagtca tcatcttcct aggttcattc tatcttgtga 1501 atttgatttt ggccattgtt gccatgtcgt atgacgaatt gcaaaagaag gccgaagaag 1561 aagaggctgc cgaagaggag gcgatacgtg aagccgagga agctgccgcc gccaaagcag 1621 ccaagctgga ggagcgcgcc aatgcgcagg cccaggccgc cgccgatgca gctgccgccg 1681 aagaggcggc tcttcatccg gagatggcca agagtccgac gtattcgtgc atcagctatg 1741 agctatttgt gggcggcgag aaaggcaacg atgacaacaa caaggagaag atgtccatac 1801 gcagcgttga ggtggagtcg gagtcggtga gcgttataca aagacaacca gcacctacca 1861 cagcacacca agctaccaaa gttcgtaaag tgagcacgac atccttatcc ttacctggtt 1921 caccgtttaa catacgcagg ggatcacgta gttctcacaa gtacacgatc cggaatggac 1981 gtggacgctt tggtataccc ggcagcgatc gcaagccgtt ggtattgtca acatatcagg 2041 atgctcagca gcacttgccc tatgccgatg attcgaacgc tgttacgccc atgtccgagg 2101 agaacggtgc cattatagtg cccgtttatt atggaaatct aggctccagg cattcatcgt 2161 atacttcgca tcagtccaga atatcgtata cctcacatgg cgatctattg ggcggcatgg 2221 ccgtcatggg cgtcagcaca atgaccaagg agagcaaatt gcgaaatcgc aactcacgca 2281 atcaatcagt gggcgccacc aatggcggca ccacctgcct ggaccccaat cacaaggtcg 2341 agcatcgcga cttcgaaatc ggtctggagt gcacggacga agctggcaag attaaacatc 2401 atgacaatcc ttttatcgag cccgtccaga cacaaacggt agtcgacatg aaagatgtga 2461 tggtactgaa tgacattatc gaacaggccg ctggtcggca cagtcgggct agtgatcgcg 2521 gtgtctccgt ttactatttc ccaacagagg acgatgatga ggatgggccg acattaaaag 2581 acaaggccct cgaagcgcta atgaaaggca tcgaagtgtt ttgtgtgtgg gactgttgct 2641 gggtttggtt gaaattgcag gagtggatat cgctgatcgt cttcgatccc tttgtcgagc 2701 tcttcatcac gctgtgcatt gtggtcaaca cgatgttcat ggccatggac catcacgaca 2761 tgaacaagga gatggaacgc atccttaagt gcggaaatta tttcttcacg gcaacattcg 2821 ccattgaggc aaccatgaaa ctgtgcgcca tgagccccaa atactatttc caggagggct 2881 ggaacatctt tgacttcatc attgtggcac tctcattgct ggagctgggc ctcgagggcg 2941 ttcagggcct ctccgtcttg cgttcgtttc gtttgctgcg tgtattcaaa ttggccaagt 3001 cctggccaac acttaattta ctcatttcga ttatgggacg caccatgggc gctttgggta 3061 atctgacatt tgtactttgc attatcatct tcatctttgc ggtgatggga atgcaactgt 3121 tcggaaagaa ttatcatgat aacaaggatc gcttcccgga cggtgacctg ccccgctgga 3181 acttcaccga cttcatgcac agcttcatga tcgtgtttcg ggtgctatgc ggcgagtgga 3241 tcgagtccat gtgggactgt atgcacgtgg gcgatgtatc gtgcattcca ttcttcttgg 3301 ccaccgttgt catcggcaat ttagtggttc ttaacctttt cttagccctg cttttgtcaa 3361 attttggttc atctagctta tcagcgccga cagccgataa cgataccaat aaaatagccg 3421 aggccttcaa tcgaattggg cgatttaaaa gttgggttaa gcgtaatatt gctgattgtt 3481 tcaagttaat acgtaacaaa ttgacaaatc aaataagtga tcaaccatca ggcaaaggcg 3541 tttgtcgttg tatatctgca gagcacggcg acaacgagct ggagctgggc cacgacgaga 3601 tactcgccga cgggctcatc aagaagggca tcaaggaggc gacacagctg gaggtggcca 3661 tcggtgatgg catggagttc acgatacacg gcgacatgaa gaacaacaag ccgaagaaat 3721 ccaaatatct aaataacgca acgatgattg gcaactcaat taaccaccaa gacaatagac 3781 tggaacacga gctaaaccat agaggtttgt ccttacagga cgacgacact gccagcatta 3841 actcatatgg tagccataag aatcgaccat tcaaggatga gagccacaag ggcagcgccg 3901 agacgatgga gggcgaggag aagcgggacg ccagcaagga ggatttaggt atcgatgagg 3961 agctcgacga ggagggcgaa ttggaggagg gcccgctcga cggcgatatc atcatacatg 4021 ccaacgatga ggatatactc gatgaatatc cagctgattg ctgccccgat tcgtactata 4081 agaaatttcc gatcttagcc ggtgatgatg actcgccgtt ctggcaagga tggggcaatt 4141 tacgactgaa aacttttcaa ttaattgaaa ataaatattt tgaaacagct gttatcacta 4201 tgattttaat gagtagctta gctttggcat tagaagatgt acatctgcca caaagaccca 4261 tactgcagga tattttatac tatatggaca gaatatttac ggttatattc ttcttggaaa 4321 tgttaatcaa gtggctggcg ctcggcttca aagtgtactt cacgaacgcg tggtgctggc 4381 tcgatttcgt cattgtcatg gtatcgctta tcaacttcgt tgcttcactt gttggagctg 4441 gtggtattca agccttcaag actatgcgaa cgttaagagc actgagacca ctacgtgcca 4501 tgtcccgtat gcagggcatg agggtcgtcg ttaatgcgct ggtacaagct ataccgtcca 4561 tcttcaatgt gctattggtg tgtctaatat tttggctaat ttttgccata atgggtgtac 4621 agctttttgc tggaaaatat tttaagtgcg aggacatgaa tggcacgaag ctcagccacg 4681 agatcatacc aaatcgcaat gcctgcgaaa gcgagaacta cacgtgggtg aattcagcaa 4741 tgaatttcga tcatgtaggt aacgcgtatc tgtgcctttt ccaagtggcc accttcaaag 4801 gctggataca aatcatgaac gatgctatcg attcacgaga ggtggacaag cagccaattc 4861 gtgaaacgaa catctacatg tatttatatt tcgtattctt catcatattt ggatcatttt 4921 tcacactcaa tctgttcatt ggtgttatca ttgataattt taatgagcaa aagaaaaaag 4981 caggtggatc attagaaatg ttcatgacag aagatcagaa aaagtactat aatgctatga 5041 aaaagatggg ctctaaaaaa ccattaaaag ccattccaag accaaggtgg cgtccacaag 5101 caatagtctt tgaaatagta accgataaga aattcgatat agtcataatg ttattcattg 5161 gtctgaacat gttcaccatg acactcgatc gttacgatgc gtcggacacg tacaacgcgg 5221 tccttgacta tctcaatgcg atattcgtag ttattttcag ttccgaatgt ctattaaaaa 5281 tattcgcttt acgatatcac tattttattg agccatggaa tttatttgat gtagtagttg 5341 tcattttatc catcttaggt ctcgtactta gcgatattat cgagaaatac ttcgtatcgc 5401 cgacactgct ccgagtggtg cgcgtggcca aagtgggtcg cgtactgcgt ctggtgaagg 5461 gcgccaaggg tatacgaacg ctgctgttcg ccctggccat gtcgctgccg gcgctgttca 5521 acatctgcct gctgctgttc ctggtcatgt tcatcttcgc gatattcggc atgtcgttct 5581 tcatgcatgt gaaggagaag agcggcatca acgacgtcta caacttcaag acgttcggac 5641 agagcatgat cctgctcttt cagatgtcta cctcagccgg ttgggatggt gtactcgacg 5701 ccattatcaa tgaggaagca tgcgatccac ccgacaacga caaaggctat ccgggcaatt 5761 gtggttcagc gaccgttgga ataacgtttc tcctctcata cctagttata agctttttga 5821 tagttattaa tatgtacatt gctgtcattc tcgagaacta tagtcaggcc accgaggatg 5881 tgcaggaggg tctcaccgac gacgattacg atatgtacta tgagatctgg caacagttcg 5941 atccggaggg cacccagtac atacgatacg accagctgtc cgagttcctc gacgtgctgg 6001 agcccccgct ccagattcac aagcccaaca agtacaaaat catatcgatg gacataccca 6061 tctgtcgcgg tgacctcatg tactgtgtgg acatactgga cgcactgacc aaagactttt 6121 tcgcgcgcaa aggcaatccc attgaggaga cgggcgagat tggtgagatt gccgccaggc 6181 cggacaccga gggctacgag cccgtctcct ccaccctctg gcgacagcgg gaggagtact 6241 gtgcccgcct cattcaacat gcctggcgca agcataaaac gcgcgccgag ggcggtggtg 6301 caccgtccga cgcggaaggc gacggccccg aagatggtga tgcgggtggc ggtggcgggg 6361 cggcgctgat gctgggtgtt ctggatgttc cagatgctgc tggcgatgca gcaaccactg 6421 gctcccatga cggggcaacg gcactcgatc ccgagaccga tccatcggga gtaccggcgg 6481 cagcggcggt ggccccacag ccagccggtg acggcggcga gggaccggat ggaggagcaa 6541 cagccgatcc gcacgagagc aatgtaaata gtccgacgat ggacggcgcg acggcgggca 6601 gcccgggcgc agggagcgct ggcagcactg gccgacagac ggccgttctc gtggagagcg 6661 atgggtttgt gaccaagaac gggcacaagg ttgtaataca ctcgcgttcg ccgagcataa 6721 cgtcgcgcac ggcggatgtc tgagccaggc ctcgcccccc cctccaagat gcacgcgagt 6781 attaggtgca ggtgcagatg cagtgcagtg gtggtgccac aacaacaaca acaacaacag 6841 caggtgccac tggtagctgc aattgcaact gcaacagcag caacaggaag aa