PREDICTED: Drosophila obscura sodium channel protein para
LOCUS XM_022361483 6892 bp mRNA linear INV 14-MAY-2021
(LOC111070739), transcript variant X3, mRNA.
ACCESSION XM_022361483
VERSION XM_022361483.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022361483.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..6892
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..6892
/gene="LOC111070739"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 45 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 5 samples with support for all annotated
introns"
/db_xref="GeneID:111070739"
CDS 237..6743
/gene="LOC111070739"
/codon_start=1
/product="sodium channel protein para isoform X3"
/protein_id="XP_022217175.2"
/db_xref="GeneID:111070739"
/translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK
RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL
EDIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFII
TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD
FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII
LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDD
GISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED
LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI
REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE
KGNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNI
RRGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENG
AIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRN
QSVGATNGGTTCLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKD
VMVLNDIIEQAAGRHSRASDRGVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVW
DCCWVWLKLQEWISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYF
FTATFAIEATMKLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLL
RVFKLAKSWPTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDR
FPDGDLPRWNFTDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLV
VLNLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNK
LTNQISDQPSGKGVCRCISAEHGDNELELGHDEILADGLIKKGIKEATQLEVAIGDGM
EFTIHGDMKNNKPKKSKYLNNATMIGNSINHQDNRLEHELNHRGLSLQDDDTASINSY
GSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDIIIHA
NDEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVI
TMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNA
WCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALV
QAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESEN
YTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYF
VFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPL
KAIPRPRWRPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNA
IFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLR
VVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMH
VKEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNC
GSATVGITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQ
FDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALT
KDFFARKGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKTR
AEGGGAPSDAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALDPET
DPSGVPAAAAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAGSTG
RQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV"
misc_feature 690..1544
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 1899..2456
/gene="LOC111070739"
/note="Cytoplasmic domain of voltage-gated Na+ ion
channel; Region: Na_trans_cytopl; pfam11933"
/db_xref="CDD:463401"
misc_feature 2685..3320
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 3396..4160
/gene="LOC111070739"
/note="Sodium ion transport-associated; Region:
Na_trans_assoc; pfam06512"
/db_xref="CDD:461936"
misc_feature 4170..4985
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 4953..5111
/gene="LOC111070739"
/note="Inactivation gate of the voltage-gated sodium
channel alpha subunits; Region: Na_channel_gate; cd13433"
/db_xref="CDD:240441"
misc_feature 4998..5009
/gene="LOC111070739"
/note="putative hydrophobic latch; other site"
/db_xref="CDD:240441"
misc_feature 5133..5885
/gene="LOC111070739"
/note="Ion transport protein; Region: Ion_trans;
pfam00520"
/db_xref="CDD:459842"
misc_feature 5916..6059
/gene="LOC111070739"
/note="Voltage-dependent L-type calcium channel,
IQ-associated; Region: GPHH; pfam16905"
/db_xref="CDD:465306"
ORIGIN
1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca
61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg
121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac
181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga
241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg
301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg
361 aaagaaagag agccgaggga gaggtgccgc aatatggtcg caagaaaaaa caaaaagaaa
421 tccgatatga tgacgaggac gaggatgaag gtccacaacc ggatcctaca cttgaacagg
481 gtgtgccaat acctgttcga ctgcagggca gcttccctcc ggaattggcc tccactcccc
541 tcgaggatat cgatcccttc tacagcaata tactgacatt cgtagttgta agcaaaggaa
601 aagatatttt tcgcttttct gcatcaaaag caatgtggct gctcgatcca ttcaatccga
661 tacgtcgtgt ggccatttac attttagtgc atccactatt ttcgttattc atcattacca
721 caattctcgt caactgcatc ctgatgataa tgccgacaac gcccacagtt gagtccactg
781 aggtgatatt caccggaatc tacacatttg aatcagctgt taaagtgatg gcacgaggtt
841 tcattttatg cccgtttacg tatcttagag atgcatggaa ttggctggac ttcgtagtaa
901 tagctttagc ttatgtgacc atgggtatag atttaggtaa tcttgcagcc ttgcgaacgt
961 ttagggtgct gcgagcgctt aaaaccgtag ccattgtgcc aggcttgaag accattgtcg
1021 gtgcggtcat cgaatctgta aagaatctgc gcgatgtgat aattttgaca atgttctccc
1081 tgtcggtgtt cgcgctgatg gggctgcaaa tctacatggg cgtgctaacg cagaagtgca
1141 tcaagaagtt cccgctggac ggctcctggg gcaacctgac cgacgagaac tgggcctatc
1201 acaatagcaa caactctaat tggtattcgg aagacgacgg tatatccttt ccgttgtgcg
1261 gtaatatctc tggagcgggg caatgtgaag acgattacgt gtgtctgcag gggttcgggc
1321 cgaacccgaa ctatggctac accagtttcg attcgttcgg ttgggcgttt ctgtccgcct
1381 tccggctgat gacgcaggac ttctgggagg atctgtatca gctggtgttg cgtgccgcag
1441 gaccctggca catgctgttc tttatagtca tcatcttcct aggttcattc tatcttgtga
1501 atttgatttt ggccattgtt gccatgtcgt atgacgaatt gcaaaagaag gccgaagaag
1561 aagaggctgc cgaagaggag gcgatacgtg aagccgagga agctgccgcc gccaaagcag
1621 ccaagctgga ggagcgcgcc aatgcgcagg cccaggccgc cgccgatgca gctgccgccg
1681 aagaggcggc tcttcatccg gagatggcca agagtccgac gtattcgtgc atcagctatg
1741 agctatttgt gggcggcgag aaaggcaacg atgacaacaa caaggagaag atgtccatac
1801 gcagcgttga ggtggagtcg gagtcggtga gcgttataca aagacaacca gcacctacca
1861 cagcacacca agctaccaaa gttcgtaaag tgagcacgac atccttatcc ttacctggtt
1921 caccgtttaa catacgcagg ggatcacgta gttctcacaa gtacacgatc cggaatggac
1981 gtggacgctt tggtataccc ggcagcgatc gcaagccgtt ggtattgtca acatatcagg
2041 atgctcagca gcacttgccc tatgccgatg attcgaacgc tgttacgccc atgtccgagg
2101 agaacggtgc cattatagtg cccgtttatt atggaaatct aggctccagg cattcatcgt
2161 atacttcgca tcagtccaga atatcgtata cctcacatgg cgatctattg ggcggcatgg
2221 ccgtcatggg cgtcagcaca atgaccaagg agagcaaatt gcgaaatcgc aactcacgca
2281 atcaatcagt gggcgccacc aatggcggca ccacctgcct ggaccccaat cacaaggtcg
2341 agcatcgcga cttcgaaatc ggtctggagt gcacggacga agctggcaag attaaacatc
2401 atgacaatcc ttttatcgag cccgtccaga cacaaacggt agtcgacatg aaagatgtga
2461 tggtactgaa tgacattatc gaacaggccg ctggtcggca cagtcgggct agtgatcgcg
2521 gtgtctccgt ttactatttc ccaacagagg acgatgatga ggatgggccg acattaaaag
2581 acaaggccct cgaagcgcta atgaaaggca tcgaagtgtt ttgtgtgtgg gactgttgct
2641 gggtttggtt gaaattgcag gagtggatat cgctgatcgt cttcgatccc tttgtcgagc
2701 tcttcatcac gctgtgcatt gtggtcaaca cgatgttcat ggccatggac catcacgaca
2761 tgaacaagga gatggaacgc atccttaagt gcggaaatta tttcttcacg gcaacattcg
2821 ccattgaggc aaccatgaaa ctgtgcgcca tgagccccaa atactatttc caggagggct
2881 ggaacatctt tgacttcatc attgtggcac tctcattgct ggagctgggc ctcgagggcg
2941 ttcagggcct ctccgtcttg cgttcgtttc gtttgctgcg tgtattcaaa ttggccaagt
3001 cctggccaac acttaattta ctcatttcga ttatgggacg caccatgggc gctttgggta
3061 atctgacatt tgtactttgc attatcatct tcatctttgc ggtgatggga atgcaactgt
3121 tcggaaagaa ttatcatgat aacaaggatc gcttcccgga cggtgacctg ccccgctgga
3181 acttcaccga cttcatgcac agcttcatga tcgtgtttcg ggtgctatgc ggcgagtgga
3241 tcgagtccat gtgggactgt atgcacgtgg gcgatgtatc gtgcattcca ttcttcttgg
3301 ccaccgttgt catcggcaat ttagtggttc ttaacctttt cttagccctg cttttgtcaa
3361 attttggttc atctagctta tcagcgccga cagccgataa cgataccaat aaaatagccg
3421 aggccttcaa tcgaattggg cgatttaaaa gttgggttaa gcgtaatatt gctgattgtt
3481 tcaagttaat acgtaacaaa ttgacaaatc aaataagtga tcaaccatca ggcaaaggcg
3541 tttgtcgttg tatatctgca gagcacggcg acaacgagct ggagctgggc cacgacgaga
3601 tactcgccga cgggctcatc aagaagggca tcaaggaggc gacacagctg gaggtggcca
3661 tcggtgatgg catggagttc acgatacacg gcgacatgaa gaacaacaag ccgaagaaat
3721 ccaaatatct aaataacgca acgatgattg gcaactcaat taaccaccaa gacaatagac
3781 tggaacacga gctaaaccat agaggtttgt ccttacagga cgacgacact gccagcatta
3841 actcatatgg tagccataag aatcgaccat tcaaggatga gagccacaag ggcagcgccg
3901 agacgatgga gggcgaggag aagcgggacg ccagcaagga ggatttaggt atcgatgagg
3961 agctcgacga ggagggcgaa ttggaggagg gcccgctcga cggcgatatc atcatacatg
4021 ccaacgatga ggatatactc gatgaatatc cagctgattg ctgccccgat tcgtactata
4081 agaaatttcc gatcttagcc ggtgatgatg actcgccgtt ctggcaagga tggggcaatt
4141 tacgactgaa aacttttcaa ttaattgaaa ataaatattt tgaaacagct gttatcacta
4201 tgattttaat gagtagctta gctttggcat tagaagatgt acatctgcca caaagaccca
4261 tactgcagga tattttatac tatatggaca gaatatttac ggttatattc ttcttggaaa
4321 tgttaatcaa gtggctggcg ctcggcttca aagtgtactt cacgaacgcg tggtgctggc
4381 tcgatttcgt cattgtcatg gtatcgctta tcaacttcgt tgcttcactt gttggagctg
4441 gtggtattca agccttcaag actatgcgaa cgttaagagc actgagacca ctacgtgcca
4501 tgtcccgtat gcagggcatg agggtcgtcg ttaatgcgct ggtacaagct ataccgtcca
4561 tcttcaatgt gctattggtg tgtctaatat tttggctaat ttttgccata atgggtgtac
4621 agctttttgc tggaaaatat tttaagtgcg aggacatgaa tggcacgaag ctcagccacg
4681 agatcatacc aaatcgcaat gcctgcgaaa gcgagaacta cacgtgggtg aattcagcaa
4741 tgaatttcga tcatgtaggt aacgcgtatc tgtgcctttt ccaagtggcc accttcaaag
4801 gctggataca aatcatgaac gatgctatcg attcacgaga ggtggacaag cagccaattc
4861 gtgaaacgaa catctacatg tatttatatt tcgtattctt catcatattt ggatcatttt
4921 tcacactcaa tctgttcatt ggtgttatca ttgataattt taatgagcaa aagaaaaaag
4981 caggtggatc attagaaatg ttcatgacag aagatcagaa aaagtactat aatgctatga
5041 aaaagatggg ctctaaaaaa ccattaaaag ccattccaag accaaggtgg cgtccacaag
5101 caatagtctt tgaaatagta accgataaga aattcgatat agtcataatg ttattcattg
5161 gtctgaacat gttcaccatg acactcgatc gttacgatgc gtcggacacg tacaacgcgg
5221 tccttgacta tctcaatgcg atattcgtag ttattttcag ttccgaatgt ctattaaaaa
5281 tattcgcttt acgatatcac tattttattg agccatggaa tttatttgat gtagtagttg
5341 tcattttatc catcttaggt ctcgtactta gcgatattat cgagaaatac ttcgtatcgc
5401 cgacactgct ccgagtggtg cgcgtggcca aagtgggtcg cgtactgcgt ctggtgaagg
5461 gcgccaaggg tatacgaacg ctgctgttcg ccctggccat gtcgctgccg gcgctgttca
5521 acatctgcct gctgctgttc ctggtcatgt tcatcttcgc gatattcggc atgtcgttct
5581 tcatgcatgt gaaggagaag agcggcatca acgacgtcta caacttcaag acgttcggac
5641 agagcatgat cctgctcttt cagatgtcta cctcagccgg ttgggatggt gtactcgacg
5701 ccattatcaa tgaggaagca tgcgatccac ccgacaacga caaaggctat ccgggcaatt
5761 gtggttcagc gaccgttgga ataacgtttc tcctctcata cctagttata agctttttga
5821 tagttattaa tatgtacatt gctgtcattc tcgagaacta tagtcaggcc accgaggatg
5881 tgcaggaggg tctcaccgac gacgattacg atatgtacta tgagatctgg caacagttcg
5941 atccggaggg cacccagtac atacgatacg accagctgtc cgagttcctc gacgtgctgg
6001 agcccccgct ccagattcac aagcccaaca agtacaaaat catatcgatg gacataccca
6061 tctgtcgcgg tgacctcatg tactgtgtgg acatactgga cgcactgacc aaagactttt
6121 tcgcgcgcaa aggcaatccc attgaggaga cgggcgagat tggtgagatt gccgccaggc
6181 cggacaccga gggctacgag cccgtctcct ccaccctctg gcgacagcgg gaggagtact
6241 gtgcccgcct cattcaacat gcctggcgca agcataaaac gcgcgccgag ggcggtggtg
6301 caccgtccga cgcggaaggc gacggccccg aagatggtga tgcgggtggc ggtggcgggg
6361 cggcgctgat gctgggtgtt ctggatgttc cagatgctgc tggcgatgca gcaaccactg
6421 gctcccatga cggggcaacg gcactcgatc ccgagaccga tccatcggga gtaccggcgg
6481 cagcggcggt ggccccacag ccagccggtg acggcggcga gggaccggat ggaggagcaa
6541 cagccgatcc gcacgagagc aatgtaaata gtccgacgat ggacggcgcg acggcgggca
6601 gcccgggcgc agggagcgct ggcagcactg gccgacagac ggccgttctc gtggagagcg
6661 atgggtttgt gaccaagaac gggcacaagg ttgtaataca ctcgcgttcg ccgagcataa
6721 cgtcgcgcac ggcggatgtc tgagccaggc ctcgcccccc cctccaagat gcacgcgagt
6781 attaggtgca ggtgcagatg cagtgcagtg gtggtgccac aacaacaaca acaacaacag
6841 caggtgccac tggtagctgc aattgcaact gcaacagcag caacaggaag aa