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LOCUS XM_022361481 6901 bp mRNA linear INV 14-MAY-2021 (LOC111070739), transcript variant X1, mRNA. ACCESSION XM_022361481 VERSION XM_022361481.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022361481.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6901 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..6901 /gene="LOC111070739" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 47 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:111070739" CDS 237..6752 /gene="LOC111070739" /codon_start=1 /product="sodium channel protein para isoform X1" /protein_id="XP_022217173.2" /db_xref="GeneID:111070739" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVPQYGRKKKQKEIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPL EDIDPFYSNILTFVVVSKGKDIFRFSASKAMWLLDPFNPIRRVAIYILVHPLFSLFII TTILVNCILMIMPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLD FVVIALAYVTMGIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVII LTMFSLSVFALMGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWAYHNSNNSNWYSEDD GISFPLCGNISGAGQCEDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWED LYQLVLRAAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAI REAEEAAAAKAAKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGE KGNDDNNKEKMSIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTTSLSLPGSPFNI RRGSRSSHKYTIRNGRGRFGIPGSDRKPLVLSTYQDAQQHLPYADDSNAVTPMSEENG AIIVPVYYGNLGSRHSSYTSHQSRISYTSHGDLLGGMAVMGVSTMTKESKLRNRNSRN QSVGATNGGTTCLDPNHKVEHRDFEIGLECTDEAGKIKHHDNPFIEPVQTQTVVDMKD VMVLNDIIEQAAGRHSRASDRGVSVYYFPTEDDDEDGPTLKDKALEALMKGIEVFCVW DCCWVWLKLQEWISLIVFDPFVELFITLCIVVNTMFMAMDHHDMNKEMERILKCGNYF FTATFAIEATMKLCAMSPKYYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLL RVFKLAKSWPTLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNKDR FPDGDLPRWNFTDFMHSFMIVFRVLCGEWIESMWDCMHVGDVSCIPFFLATVVIGNLV VLNLFLALLLSNFGSSSLSAPTADNDTNKIAEAFNRIGRFKSWVKRNIADCFKLIRNK LTNQISDQPSGERTNQISWIWSEEHGDNELELGHDEILADGLIKKGIKEATQLEVAIG DGMEFTIHGDMKNNKPKKSKYLNNATMIGNSINHQDNRLEHELNHRGLSLQDDDTASI NSYGSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGIDEELDEEGELEEGPLDGDII IHANDEDILDEYPADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFET AVITMILMSSLALALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYF TNAWCWLDFVIVMVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVN ALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACE SENYTWVNSAMNFDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMY LYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSK KPLKAIPRPRWRPQAIVFEIVTDKKFDIVIMLFIGLNMFTMTLDRYDASDTYNAVLDY LNAIFVVIFSSECLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPT LLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSF FMHVKEKSGINDVYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYP GNCGSATVGITFLLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEI WQQFDPEGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILD ALTKDFFARKGNPIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKH KTRAEGGGAPSDAEGDGPEDGDAGGGGGAALMLGVLDVPDAAGDAATTGSHDGATALD PETDPSGVPAAAAVAPQPAGDGGEGPDGGATADPHESNVNSPTMDGATAGSPGAGSAG STGRQTAVLVESDGFVTKNGHKVVIHSRSPSITSRTADV" misc_feature 690..1544 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 1899..2456 /gene="LOC111070739" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 2685..3320 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3396..4169 /gene="LOC111070739" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4179..4994 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 4962..5120 /gene="LOC111070739" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 5007..5018 /gene="LOC111070739" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5142..5894 /gene="LOC111070739" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5925..6068 /gene="LOC111070739" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acaaaagcaa cagcaacaac aactaccaca attgcaacaa caacaataag cagagcatca 61 acgaaagcaa gcagtcaagc gcaacatcga ttgacatcga ttaacgcatc gtgctaagcg 121 gcgggcgcta atcgaacatg gcgcctcgga tatagttgta gctttaatgt agcaggcgac 181 atccatgtgc ctcatgcctt ggaaatctaa ggctctcatc gttggccgca tagacaatga 241 cagaagattc cgactcgata tctgaggaag aacgaagttt gttccgtccc tttacccgcg 301 aatcattggt gcaaatcgaa caacgcattg ccgctgaaca tgaaaagcag aaggagctgg 361 aaagaaagag agccgaggga gaggtgccgc aatatggtcg caagaaaaaa caaaaagaaa 421 tccgatatga tgacgaggac gaggatgaag gtccacaacc ggatcctaca cttgaacagg 481 gtgtgccaat acctgttcga ctgcagggca gcttccctcc ggaattggcc tccactcccc 541 tcgaggatat cgatcccttc tacagcaata tactgacatt cgtagttgta agcaaaggaa 601 aagatatttt tcgcttttct gcatcaaaag caatgtggct gctcgatcca ttcaatccga 661 tacgtcgtgt ggccatttac attttagtgc atccactatt ttcgttattc atcattacca 721 caattctcgt caactgcatc ctgatgataa tgccgacaac gcccacagtt gagtccactg 781 aggtgatatt caccggaatc tacacatttg aatcagctgt taaagtgatg gcacgaggtt 841 tcattttatg cccgtttacg tatcttagag atgcatggaa ttggctggac ttcgtagtaa 901 tagctttagc ttatgtgacc atgggtatag atttaggtaa tcttgcagcc ttgcgaacgt 961 ttagggtgct gcgagcgctt aaaaccgtag ccattgtgcc aggcttgaag accattgtcg 1021 gtgcggtcat cgaatctgta aagaatctgc gcgatgtgat aattttgaca atgttctccc 1081 tgtcggtgtt cgcgctgatg gggctgcaaa tctacatggg cgtgctaacg cagaagtgca 1141 tcaagaagtt cccgctggac ggctcctggg gcaacctgac cgacgagaac tgggcctatc 1201 acaatagcaa caactctaat tggtattcgg aagacgacgg tatatccttt ccgttgtgcg 1261 gtaatatctc tggagcgggg caatgtgaag acgattacgt gtgtctgcag gggttcgggc 1321 cgaacccgaa ctatggctac accagtttcg attcgttcgg ttgggcgttt ctgtccgcct 1381 tccggctgat gacgcaggac ttctgggagg atctgtatca gctggtgttg cgtgccgcag 1441 gaccctggca catgctgttc tttatagtca tcatcttcct aggttcattc tatcttgtga 1501 atttgatttt ggccattgtt gccatgtcgt atgacgaatt gcaaaagaag gccgaagaag 1561 aagaggctgc cgaagaggag gcgatacgtg aagccgagga agctgccgcc gccaaagcag 1621 ccaagctgga ggagcgcgcc aatgcgcagg cccaggccgc cgccgatgca gctgccgccg 1681 aagaggcggc tcttcatccg gagatggcca agagtccgac gtattcgtgc atcagctatg 1741 agctatttgt gggcggcgag aaaggcaacg atgacaacaa caaggagaag atgtccatac 1801 gcagcgttga ggtggagtcg gagtcggtga gcgttataca aagacaacca gcacctacca 1861 cagcacacca agctaccaaa gttcgtaaag tgagcacgac atccttatcc ttacctggtt 1921 caccgtttaa catacgcagg ggatcacgta gttctcacaa gtacacgatc cggaatggac 1981 gtggacgctt tggtataccc ggcagcgatc gcaagccgtt ggtattgtca acatatcagg 2041 atgctcagca gcacttgccc tatgccgatg attcgaacgc tgttacgccc atgtccgagg 2101 agaacggtgc cattatagtg cccgtttatt atggaaatct aggctccagg cattcatcgt 2161 atacttcgca tcagtccaga atatcgtata cctcacatgg cgatctattg ggcggcatgg 2221 ccgtcatggg cgtcagcaca atgaccaagg agagcaaatt gcgaaatcgc aactcacgca 2281 atcaatcagt gggcgccacc aatggcggca ccacctgcct ggaccccaat cacaaggtcg 2341 agcatcgcga cttcgaaatc ggtctggagt gcacggacga agctggcaag attaaacatc 2401 atgacaatcc ttttatcgag cccgtccaga cacaaacggt agtcgacatg aaagatgtga 2461 tggtactgaa tgacattatc gaacaggccg ctggtcggca cagtcgggct agtgatcgcg 2521 gtgtctccgt ttactatttc ccaacagagg acgatgatga ggatgggccg acattaaaag 2581 acaaggccct cgaagcgcta atgaaaggca tcgaagtgtt ttgtgtgtgg gactgttgct 2641 gggtttggtt gaaattgcag gagtggatat cgctgatcgt cttcgatccc tttgtcgagc 2701 tcttcatcac gctgtgcatt gtggtcaaca cgatgttcat ggccatggac catcacgaca 2761 tgaacaagga gatggaacgc atccttaagt gcggaaatta tttcttcacg gcaacattcg 2821 ccattgaggc aaccatgaaa ctgtgcgcca tgagccccaa atactatttc caggagggct 2881 ggaacatctt tgacttcatc attgtggcac tctcattgct ggagctgggc ctcgagggcg 2941 ttcagggcct ctccgtcttg cgttcgtttc gtttgctgcg tgtattcaaa ttggccaagt 3001 cctggccaac acttaattta ctcatttcga ttatgggacg caccatgggc gctttgggta 3061 atctgacatt tgtactttgc attatcatct tcatctttgc ggtgatggga atgcaactgt 3121 tcggaaagaa ttatcatgat aacaaggatc gcttcccgga cggtgacctg ccccgctgga 3181 acttcaccga cttcatgcac agcttcatga tcgtgtttcg ggtgctatgc ggcgagtgga 3241 tcgagtccat gtgggactgt atgcacgtgg gcgatgtatc gtgcattcca ttcttcttgg 3301 ccaccgttgt catcggcaat ttagtggttc ttaacctttt cttagccctg cttttgtcaa 3361 attttggttc atctagctta tcagcgccga cagccgataa cgataccaat aaaatagccg 3421 aggccttcaa tcgaattggg cgatttaaaa gttgggttaa gcgtaatatt gctgattgtt 3481 tcaagttaat acgtaacaaa ttgacaaatc aaataagtga tcaaccatca ggtgagagga 3541 ccaaccagat cagttggatt tggagcgaag agcacggcga caacgagctg gagctgggcc 3601 acgacgagat actcgccgac gggctcatca agaagggcat caaggaggcg acacagctgg 3661 aggtggccat cggtgatggc atggagttca cgatacacgg cgacatgaag aacaacaagc 3721 cgaagaaatc caaatatcta aataacgcaa cgatgattgg caactcaatt aaccaccaag 3781 acaatagact ggaacacgag ctaaaccata gaggtttgtc cttacaggac gacgacactg 3841 ccagcattaa ctcatatggt agccataaga atcgaccatt caaggatgag agccacaagg 3901 gcagcgccga gacgatggag ggcgaggaga agcgggacgc cagcaaggag gatttaggta 3961 tcgatgagga gctcgacgag gagggcgaat tggaggaggg cccgctcgac ggcgatatca 4021 tcatacatgc caacgatgag gatatactcg atgaatatcc agctgattgc tgccccgatt 4081 cgtactataa gaaatttccg atcttagccg gtgatgatga ctcgccgttc tggcaaggat 4141 ggggcaattt acgactgaaa acttttcaat taattgaaaa taaatatttt gaaacagctg 4201 ttatcactat gattttaatg agtagcttag ctttggcatt agaagatgta catctgccac 4261 aaagacccat actgcaggat attttatact atatggacag aatatttacg gttatattct 4321 tcttggaaat gttaatcaag tggctggcgc tcggcttcaa agtgtacttc acgaacgcgt 4381 ggtgctggct cgatttcgtc attgtcatgg tatcgcttat caacttcgtt gcttcacttg 4441 ttggagctgg tggtattcaa gccttcaaga ctatgcgaac gttaagagca ctgagaccac 4501 tacgtgccat gtcccgtatg cagggcatga gggtcgtcgt taatgcgctg gtacaagcta 4561 taccgtccat cttcaatgtg ctattggtgt gtctaatatt ttggctaatt tttgccataa 4621 tgggtgtaca gctttttgct ggaaaatatt ttaagtgcga ggacatgaat ggcacgaagc 4681 tcagccacga gatcatacca aatcgcaatg cctgcgaaag cgagaactac acgtgggtga 4741 attcagcaat gaatttcgat catgtaggta acgcgtatct gtgccttttc caagtggcca 4801 ccttcaaagg ctggatacaa atcatgaacg atgctatcga ttcacgagag gtggacaagc 4861 agccaattcg tgaaacgaac atctacatgt atttatattt cgtattcttc atcatatttg 4921 gatcattttt cacactcaat ctgttcattg gtgttatcat tgataatttt aatgagcaaa 4981 agaaaaaagc aggtggatca ttagaaatgt tcatgacaga agatcagaaa aagtactata 5041 atgctatgaa aaagatgggc tctaaaaaac cattaaaagc cattccaaga ccaaggtggc 5101 gtccacaagc aatagtcttt gaaatagtaa ccgataagaa attcgatata gtcataatgt 5161 tattcattgg tctgaacatg ttcaccatga cactcgatcg ttacgatgcg tcggacacgt 5221 acaacgcggt ccttgactat ctcaatgcga tattcgtagt tattttcagt tccgaatgtc 5281 tattaaaaat attcgcttta cgatatcact attttattga gccatggaat ttatttgatg 5341 tagtagttgt cattttatcc atcttaggtc tcgtacttag cgatattatc gagaaatact 5401 tcgtatcgcc gacactgctc cgagtggtgc gcgtggccaa agtgggtcgc gtactgcgtc 5461 tggtgaaggg cgccaagggt atacgaacgc tgctgttcgc cctggccatg tcgctgccgg 5521 cgctgttcaa catctgcctg ctgctgttcc tggtcatgtt catcttcgcg atattcggca 5581 tgtcgttctt catgcatgtg aaggagaaga gcggcatcaa cgacgtctac aacttcaaga 5641 cgttcggaca gagcatgatc ctgctctttc agatgtctac ctcagccggt tgggatggtg 5701 tactcgacgc cattatcaat gaggaagcat gcgatccacc cgacaacgac aaaggctatc 5761 cgggcaattg tggttcagcg accgttggaa taacgtttct cctctcatac ctagttataa 5821 gctttttgat agttattaat atgtacattg ctgtcattct cgagaactat agtcaggcca 5881 ccgaggatgt gcaggagggt ctcaccgacg acgattacga tatgtactat gagatctggc 5941 aacagttcga tccggagggc acccagtaca tacgatacga ccagctgtcc gagttcctcg 6001 acgtgctgga gcccccgctc cagattcaca agcccaacaa gtacaaaatc atatcgatgg 6061 acatacccat ctgtcgcggt gacctcatgt actgtgtgga catactggac gcactgacca 6121 aagacttttt cgcgcgcaaa ggcaatccca ttgaggagac gggcgagatt ggtgagattg 6181 ccgccaggcc ggacaccgag ggctacgagc ccgtctcctc caccctctgg cgacagcggg 6241 aggagtactg tgcccgcctc attcaacatg cctggcgcaa gcataaaacg cgcgccgagg 6301 gcggtggtgc accgtccgac gcggaaggcg acggccccga agatggtgat gcgggtggcg 6361 gtggcggggc ggcgctgatg ctgggtgttc tggatgttcc agatgctgct ggcgatgcag 6421 caaccactgg ctcccatgac ggggcaacgg cactcgatcc cgagaccgat ccatcgggag 6481 taccggcggc agcggcggtg gccccacagc cagccggtga cggcggcgag ggaccggatg 6541 gaggagcaac agccgatccg cacgagagca atgtaaatag tccgacgatg gacggcgcga 6601 cggcgggcag cccgggcgca gggagcgctg gcagcactgg ccgacagacg gccgttctcg 6661 tggagagcga tgggtttgtg accaagaacg ggcacaaggt tgtaatacac tcgcgttcgc 6721 cgagcataac gtcgcgcacg gcggatgtct gagccaggcc tcgccccccc ctccaagatg 6781 cacgcgagta ttaggtgcag gtgcagatgc agtgcagtgg tggtgccaca acaacaacaa 6841 caacaacagc aggtgccact ggtagctgca attgcaactg caacagcagc aacaggaaga 6901 a