PREDICTED: Drosophila obscura ubiquitin carboxyl-terminal hydrolase
LOCUS XM_022361370 4460 bp mRNA linear INV 14-MAY-2021
7 (LOC111070661), transcript variant X2, mRNA.
ACCESSION XM_022361370
VERSION XM_022361370.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022361370.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..4460
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..4460
/gene="LOC111070661"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 2 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 17 samples with support for all annotated
introns"
/db_xref="GeneID:111070661"
CDS 336..3782
/gene="LOC111070661"
/codon_start=1
/product="ubiquitin carboxyl-terminal hydrolase 7"
/protein_id="XP_022217062.2"
/db_xref="GeneID:111070661"
/translation="MEIETEQSIEAMDTQDTQEVEIITSDLHQQQQQQQQQQQQQQQL
QNQNQQQNSPPQLPKFKNLIQPQLHAVGGVTQLPSENGNVPPQQLLADSSSSSFANEQ
DTMSLDDENKEDQFRSETTFAYTVDNVGQLKSQRLSPPVYVRMLPWKIMVIPNDRALG
FFLQCNGENDSPTWSCNAIAELRLKCHKAESQPFTRARIKHLFYSKENDYGYSNFITW
QELQDSEKSYIHNNSITLEVHVIADAPHGVLWDSKKHTGYVGLKNQGATCYMNSLLQT
LYFTNSLRLAVYRIPTEADDSTKSVGLSLQRVFHELQFGDRPVGTKKLTKSFGWETLD
SFMQHDVQEFLRVLLDKLESKMKGTCLEGTIPGLFEGKMSSYIKCKNVDYNSTRYETF
YDIQLNIKDKKNIYESFQDYVASETLEGDNKYDAGVHGLQEASKGVIFTSFPPVLHLH
LMRFQYDPITDSSIKYNDRFEFYEQINLDNYLAEGEKTTADYVLHAVLVHSGDNHGGH
YVVFINPKADGRWFKFDDDVVSSCRKQEAIELNYGGMDDEISFHAKCSNAYMLVYIRQ
SELDRVLGDIPENEISSDLVERLDLEKRIEMARRKERSEANLYISVHVILEEYFEGQQ
KRRLFDLEKTHQRPFKLKQNQTVDELVDMFVKSFGVSRDRMRIWNMCTAQTQKFLYFD
FEAEGSRTIEQIPTSQKPWVIFLELAPQDSSEPLAPFNPKSDVLLFLKYYDAKNKRLN
YIGCTHQPQSRRLIDLCPEVNRKLGFDLDTEMTVFDEYGDKKIANLNDPIESVLYLPP
DNLQGHILIFEREMIDIKLDLPTVEEYFLDLVYRIEIIFSDKCNPNEPDFVLELSNRY
NYDQLTNAVAERLNTDPQKLQFFMCINNYKETAGNAVPYTFKGTVKDLVSYTKQSTPK
RIFYQRLSLSIHELDNKKQFKCIWVSNDLKEEKELVLYPNKNDNVKGLLEEAAKKITF
QENSRKKLRLMKVSNHKIVAHCKDDIPLDTLLKTNDSAIATTQSAQKIYRVEEVPTDE
MQLAENEYLLPVAHFSKELYNSFGVPFLTKARHGEPYGVLKQRIQKRLNVPDKEWENY
KFTVINTGITTEVNDNDVINLENFRTSTSGQLPFLGLDHINKSRKRSSLNFSEKAIKI
YN"
misc_feature 690..3749
/gene="LOC111070661"
/note="Peptidase C19 contains ubiquitinyl hydrolases. They
are intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyse bonds involving the
carboxyl group of the C-terminal Gly...; Region:
Peptidase_C19; cl02553"
/db_xref="CDD:470612"
misc_feature order(1122..1124,1137..1139,1857..1859,1911..1913)
/gene="LOC111070661"
/note="active site"
/db_xref="CDD:239124"
ORIGIN
1 tatatgtttt cggcaacaat atttttctaa gaaaaggcga cgtgcaaagc acacactgaa
61 aagtcttacc cacacatgta aaacagtgta cgccgtgaat taagaagtgt gtagaaacag
121 aacacctttt cgatcgaact actgcaacac agtgcaaggg ctctctccaa ggacccccca
181 gcgacacaca aattcgagcc cgaaggggca tatgtacatt cagcagcgca aactcgaaaa
241 aaagggcagc gcaacagaag aggaggaaac agcgataccg tcgaaaccga gaggcgacac
301 cgcctgtttc tagcaccatt caagtcccga ataagatgga aattgaaaca gaacaatcca
361 tcgaagcaat ggacacccag gacacccaag aggtcgagat aatcactagc gatcttcacc
421 agcagcagca acaacagcag cagcaacaac aacagcagca gcagctccag aatcaaaatc
481 aacaacagaa ttcgccgcca cagctgccga aattcaaaaa tctgatacag ccacaattgc
541 acgcggttgg tggagtcacc cagctgccca gcgagaacgg caacgtgccg ccacaacagc
601 tgctggccga cagcagctcc tcatcgtttg ccaacgaaca ggacacaatg tcgttggacg
661 acgagaacaa ggaggatcag ttccgttcgg agaccacatt cgcctatacg gtcgataatg
721 tgggacaatt gaaatcacag cgtctgtcgc cgccagtgta tgtacggatg ctgccatgga
781 agataatggt cataccgaac gaccgggcat tgggcttctt tctgcagtgc aacggtgaga
841 atgattcgcc cacctggtcg tgcaatgcca ttgccgaatt gcgtctcaag tgccacaagg
901 cagagtctca gccgttcacg cgtgcccgca tcaagcattt gttctactcg aaggagaacg
961 actatggcta ctcgaacttc attacctggc aggagctgca ggattcggag aagagctata
1021 tacacaacaa cagcattacc ttagaggtgc atgtcatagc cgatgcaccg catggcgtac
1081 tctgggactc gaagaagcac accggctatg tcggcctaaa gaatcagggg gccacctgct
1141 acatgaactc cctgctgcag acgctctatt ttaccaattc cctgcgcctg gccgtctatc
1201 gcatacccac agaggccgac gatagcacca agtcggtggg cctctcactg cagcgtgttt
1261 tccacgagct ccagttcggc gatcgtccgg tgggcaccaa gaagctaacc aaatcctttg
1321 gctgggagac actcgactcg ttcatgcagc acgatgtcca ggagttcctg cgcgttctgc
1381 tcgacaagct cgagtcaaag atgaagggca cctgcctcga gggcaccata ccgggcctct
1441 ttgagggcaa aatgtcatcg tatatcaaat gcaagaatgt ggactataac agcacacgct
1501 atgagacctt ctacgatatc cagctaaata tcaaagacaa aaagaacatt tacgaatcat
1561 ttcaggacta tgtcgcctcc gagaccctcg agggtgacaa caaatacgat gctggcgtcc
1621 atggcttgca ggaggccagc aagggtgtca tcttcacgtc attcccgccc gttctgcact
1681 tgcatttgat gcgtttccaa tacgatccca ttacggacag ctcgatcaag tacaacgatc
1741 gcttcgagtt ctacgaacaa atcaatctcg ataactatct ggccgagggt gagaagacaa
1801 cagcggacta tgtcctgcat gccgtgctgg tgcattcggg cgataatcat ggcgggcact
1861 atgtggtctt tatcaatcca aaggccgatg ggcgctggtt caagtttgat gacgatgtgg
1921 tctccagttg ccgcaaacag gaggccattg agctgaatta tggcggcatg gatgatgaga
1981 tctcgttcca tgccaaatgc agcaatgcct atatgctggt gtacatcagg caatcggaac
2041 tggatcgtgt gctgggcgat ataccagaga atgagatatc cagcgatctg gtggagcgtc
2101 tcgatctgga gaaacgcatc gagatggcgc gtcgcaagga gcgcagcgag gccaatttgt
2161 atatctcggt gcatgtcata ctcgaggagt actttgaggg ccaacagaag cgtcgtctct
2221 tcgacttgga gaagacccat cagcgtccgt ttaagctcaa gcagaatcag accgttgacg
2281 agctggtcga tatgtttgtg aagagctttg gcgtctcgcg cgatcgtatg cgcatttgga
2341 acatgtgcac cgcccagacg caaaagtttc tctactttga ctttgaggcg gagggatcgc
2401 gcaccatcga acagataccc acatcacaga agccgtgggt gatctttctc gagctggcac
2461 cacaggacag cagcgaaccg ttggcaccct tcaatcccaa atcagatgtg ctgctcttcc
2521 tcaagtatta cgatgccaag aacaagcgtc tcaattatat tggatgcaca catcagccgc
2581 agagtcgacg cctcatcgat ctgtgtccgg aggtgaaccg caagctgggc ttcgatctgg
2641 acaccgagat gaccgtcttt gatgagtatg gcgacaaaaa gatcgccaat ctgaatgatc
2701 ccattgagag tgtgctctat ctgccgcccg ataatctgca ggggcacata ctcatctttg
2761 agcgtgagat gattgacatt aaactggatc tgccaacggt cgaggaatac tttctggatc
2821 tggtctatcg cattgagatt atattcagcg acaagtgtaa tcccaatgag ccagactttg
2881 tgctggaatt gtccaatcgc tataattacg atcaactaac caatgcggtg gccgagcgcc
2941 tcaacacgga tccacagaag ttgcagttct ttatgtgcat caacaactac aaggagacgg
3001 cgggcaatgc agtgccctat acattcaagg gaacggtcaa ggatctggtc tcgtacacca
3061 agcaaagcac accgaagcgc atattttatc agcgtctgtc gttgagcatc catgagctgg
3121 acaacaagaa gcaattcaag tgcatttggg tgtccaacga tctgaaggag gagaaggagc
3181 ttgtactcta tccgaacaag aatgacaacg ttaaggggct gctggaggag gcggccaaga
3241 agataacctt ccaggagaat agccgcaaga agctgcgcct gatgaaggtc agcaatcata
3301 agattgtcgc ccactgcaag gacgatatac cgctggatac gctgctcaag acgaatgact
3361 cggcgatcgc caccacccag agtgcacaga agatctatcg cgttgaggag gtgcccacag
3421 atgagatgca gctggccgag aatgaatatc tgttgccggt ggcccatttc agcaaggagc
3481 tgtacaactc gtttggcgta cccttcctca ccaaggcgcg tcatggggag ccctatgggg
3541 tcctcaagca gcgcatacag aagcgtctta atgtcccgga caaggagtgg gagaactaca
3601 agttcaccgt gatcaatacg ggcatcacca ctgaggtgaa cgacaacgat gtcatcaatt
3661 tggagaattt ccgcacctcg actagcggac agttgccctt ccttggtctc gatcacatca
3721 acaagtcacg caagcgtagt tcgctgaatt tctccgagaa ggcgatcaaa atttacaatt
3781 aaattgaaca cacacacaca catacacaca cacaagaaac aagaaagcag atggagcaga
3841 tggatggtgg ttctgcgagt ggaggtggag gcaagcgagg ctaggaggag gctgctgtaa
3901 ctgggactgg gtcgaaaatt gggcgagacg ggaagcaaag acgtgacgac atccatccat
3961 cgatcgacac gcgcccgccg cccgaaaaca caaattttaa gcaaattgtc cttaaaattg
4021 tatgcctcct actccaactc ccactccctc aaaacgggcc catcaccccc cgcccacttc
4081 ttctgaaccc aaaagtagaa attgacgtgg attttttttt aataatatta tttctaagtc
4141 ataaaattta tttattaatc gcctccggtc aatttttaat atggttgtcc gcccgatcct
4201 acacccagag tttgccttcc ctccccccgc tgcggctccg gcctaaactc caggtccggc
4261 ccgagcctca cggcactaag tccatgagaa agctaaaaaa aaaaaattta taaatttact
4321 gacttattgc gcttgcatta gtgacttcaa attctaggct aaggctttta aagtgtgttt
4381 atttaattaa tttttttttt cctctaattt tctaaatacg atattcctaa acgcggtaat
4441 tgttttgaag tcggaacgaa