PREDICTED: Drosophila obscura ubiquitin carboxyl-terminal hydrolase
LOCUS XM_022361369 4700 bp mRNA linear INV 14-MAY-2021
7 (LOC111070661), transcript variant X1, mRNA.
ACCESSION XM_022361369
VERSION XM_022361369.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022361369.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..4700
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..4700
/gene="LOC111070661"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 2 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 17 samples with support for all annotated
introns"
/db_xref="GeneID:111070661"
CDS 576..4022
/gene="LOC111070661"
/codon_start=1
/product="ubiquitin carboxyl-terminal hydrolase 7"
/protein_id="XP_022217061.2"
/db_xref="GeneID:111070661"
/translation="MEIETEQSIEAMDTQDTQEVEIITSDLHQQQQQQQQQQQQQQQL
QNQNQQQNSPPQLPKFKNLIQPQLHAVGGVTQLPSENGNVPPQQLLADSSSSSFANEQ
DTMSLDDENKEDQFRSETTFAYTVDNVGQLKSQRLSPPVYVRMLPWKIMVIPNDRALG
FFLQCNGENDSPTWSCNAIAELRLKCHKAESQPFTRARIKHLFYSKENDYGYSNFITW
QELQDSEKSYIHNNSITLEVHVIADAPHGVLWDSKKHTGYVGLKNQGATCYMNSLLQT
LYFTNSLRLAVYRIPTEADDSTKSVGLSLQRVFHELQFGDRPVGTKKLTKSFGWETLD
SFMQHDVQEFLRVLLDKLESKMKGTCLEGTIPGLFEGKMSSYIKCKNVDYNSTRYETF
YDIQLNIKDKKNIYESFQDYVASETLEGDNKYDAGVHGLQEASKGVIFTSFPPVLHLH
LMRFQYDPITDSSIKYNDRFEFYEQINLDNYLAEGEKTTADYVLHAVLVHSGDNHGGH
YVVFINPKADGRWFKFDDDVVSSCRKQEAIELNYGGMDDEISFHAKCSNAYMLVYIRQ
SELDRVLGDIPENEISSDLVERLDLEKRIEMARRKERSEANLYISVHVILEEYFEGQQ
KRRLFDLEKTHQRPFKLKQNQTVDELVDMFVKSFGVSRDRMRIWNMCTAQTQKFLYFD
FEAEGSRTIEQIPTSQKPWVIFLELAPQDSSEPLAPFNPKSDVLLFLKYYDAKNKRLN
YIGCTHQPQSRRLIDLCPEVNRKLGFDLDTEMTVFDEYGDKKIANLNDPIESVLYLPP
DNLQGHILIFEREMIDIKLDLPTVEEYFLDLVYRIEIIFSDKCNPNEPDFVLELSNRY
NYDQLTNAVAERLNTDPQKLQFFMCINNYKETAGNAVPYTFKGTVKDLVSYTKQSTPK
RIFYQRLSLSIHELDNKKQFKCIWVSNDLKEEKELVLYPNKNDNVKGLLEEAAKKITF
QENSRKKLRLMKVSNHKIVAHCKDDIPLDTLLKTNDSAIATTQSAQKIYRVEEVPTDE
MQLAENEYLLPVAHFSKELYNSFGVPFLTKARHGEPYGVLKQRIQKRLNVPDKEWENY
KFTVINTGITTEVNDNDVINLENFRTSTSGQLPFLGLDHINKSRKRSSLNFSEKAIKI
YN"
misc_feature 930..3989
/gene="LOC111070661"
/note="Peptidase C19 contains ubiquitinyl hydrolases. They
are intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyse bonds involving the
carboxyl group of the C-terminal Gly...; Region:
Peptidase_C19; cl02553"
/db_xref="CDD:470612"
misc_feature order(1362..1364,1377..1379,2097..2099,2151..2153)
/gene="LOC111070661"
/note="active site"
/db_xref="CDD:239124"
ORIGIN
1 tatatgtttt cggcaacaat atttttctaa gaaaaggcga cgtgcaaagc acacactgaa
61 aagtcttacc cacacatgta aaacagtgta cgccgtgaat taagaagtgt gtaggttggt
121 tgaaaagaaa gcacacacgc acacgcgcat acacacaaca cacatacaaa actatatgcg
181 aaaatctgca agtttatctt gcggctgtcc acacccccct cccggcccca taacccttca
241 atccgacaaa cacacagcga gcgtgcggac cacgagcgcc ccgagccaaa agaaaatata
301 caatagaaat acaataaata aaattgattg aaatttcgat aaccagcaaa ggagaaacag
361 aacacctttt cgatcgaact actgcaacac agtgcaaggg ctctctccaa ggacccccca
421 gcgacacaca aattcgagcc cgaaggggca tatgtacatt cagcagcgca aactcgaaaa
481 aaagggcagc gcaacagaag aggaggaaac agcgataccg tcgaaaccga gaggcgacac
541 cgcctgtttc tagcaccatt caagtcccga ataagatgga aattgaaaca gaacaatcca
601 tcgaagcaat ggacacccag gacacccaag aggtcgagat aatcactagc gatcttcacc
661 agcagcagca acaacagcag cagcaacaac aacagcagca gcagctccag aatcaaaatc
721 aacaacagaa ttcgccgcca cagctgccga aattcaaaaa tctgatacag ccacaattgc
781 acgcggttgg tggagtcacc cagctgccca gcgagaacgg caacgtgccg ccacaacagc
841 tgctggccga cagcagctcc tcatcgtttg ccaacgaaca ggacacaatg tcgttggacg
901 acgagaacaa ggaggatcag ttccgttcgg agaccacatt cgcctatacg gtcgataatg
961 tgggacaatt gaaatcacag cgtctgtcgc cgccagtgta tgtacggatg ctgccatgga
1021 agataatggt cataccgaac gaccgggcat tgggcttctt tctgcagtgc aacggtgaga
1081 atgattcgcc cacctggtcg tgcaatgcca ttgccgaatt gcgtctcaag tgccacaagg
1141 cagagtctca gccgttcacg cgtgcccgca tcaagcattt gttctactcg aaggagaacg
1201 actatggcta ctcgaacttc attacctggc aggagctgca ggattcggag aagagctata
1261 tacacaacaa cagcattacc ttagaggtgc atgtcatagc cgatgcaccg catggcgtac
1321 tctgggactc gaagaagcac accggctatg tcggcctaaa gaatcagggg gccacctgct
1381 acatgaactc cctgctgcag acgctctatt ttaccaattc cctgcgcctg gccgtctatc
1441 gcatacccac agaggccgac gatagcacca agtcggtggg cctctcactg cagcgtgttt
1501 tccacgagct ccagttcggc gatcgtccgg tgggcaccaa gaagctaacc aaatcctttg
1561 gctgggagac actcgactcg ttcatgcagc acgatgtcca ggagttcctg cgcgttctgc
1621 tcgacaagct cgagtcaaag atgaagggca cctgcctcga gggcaccata ccgggcctct
1681 ttgagggcaa aatgtcatcg tatatcaaat gcaagaatgt ggactataac agcacacgct
1741 atgagacctt ctacgatatc cagctaaata tcaaagacaa aaagaacatt tacgaatcat
1801 ttcaggacta tgtcgcctcc gagaccctcg agggtgacaa caaatacgat gctggcgtcc
1861 atggcttgca ggaggccagc aagggtgtca tcttcacgtc attcccgccc gttctgcact
1921 tgcatttgat gcgtttccaa tacgatccca ttacggacag ctcgatcaag tacaacgatc
1981 gcttcgagtt ctacgaacaa atcaatctcg ataactatct ggccgagggt gagaagacaa
2041 cagcggacta tgtcctgcat gccgtgctgg tgcattcggg cgataatcat ggcgggcact
2101 atgtggtctt tatcaatcca aaggccgatg ggcgctggtt caagtttgat gacgatgtgg
2161 tctccagttg ccgcaaacag gaggccattg agctgaatta tggcggcatg gatgatgaga
2221 tctcgttcca tgccaaatgc agcaatgcct atatgctggt gtacatcagg caatcggaac
2281 tggatcgtgt gctgggcgat ataccagaga atgagatatc cagcgatctg gtggagcgtc
2341 tcgatctgga gaaacgcatc gagatggcgc gtcgcaagga gcgcagcgag gccaatttgt
2401 atatctcggt gcatgtcata ctcgaggagt actttgaggg ccaacagaag cgtcgtctct
2461 tcgacttgga gaagacccat cagcgtccgt ttaagctcaa gcagaatcag accgttgacg
2521 agctggtcga tatgtttgtg aagagctttg gcgtctcgcg cgatcgtatg cgcatttgga
2581 acatgtgcac cgcccagacg caaaagtttc tctactttga ctttgaggcg gagggatcgc
2641 gcaccatcga acagataccc acatcacaga agccgtgggt gatctttctc gagctggcac
2701 cacaggacag cagcgaaccg ttggcaccct tcaatcccaa atcagatgtg ctgctcttcc
2761 tcaagtatta cgatgccaag aacaagcgtc tcaattatat tggatgcaca catcagccgc
2821 agagtcgacg cctcatcgat ctgtgtccgg aggtgaaccg caagctgggc ttcgatctgg
2881 acaccgagat gaccgtcttt gatgagtatg gcgacaaaaa gatcgccaat ctgaatgatc
2941 ccattgagag tgtgctctat ctgccgcccg ataatctgca ggggcacata ctcatctttg
3001 agcgtgagat gattgacatt aaactggatc tgccaacggt cgaggaatac tttctggatc
3061 tggtctatcg cattgagatt atattcagcg acaagtgtaa tcccaatgag ccagactttg
3121 tgctggaatt gtccaatcgc tataattacg atcaactaac caatgcggtg gccgagcgcc
3181 tcaacacgga tccacagaag ttgcagttct ttatgtgcat caacaactac aaggagacgg
3241 cgggcaatgc agtgccctat acattcaagg gaacggtcaa ggatctggtc tcgtacacca
3301 agcaaagcac accgaagcgc atattttatc agcgtctgtc gttgagcatc catgagctgg
3361 acaacaagaa gcaattcaag tgcatttggg tgtccaacga tctgaaggag gagaaggagc
3421 ttgtactcta tccgaacaag aatgacaacg ttaaggggct gctggaggag gcggccaaga
3481 agataacctt ccaggagaat agccgcaaga agctgcgcct gatgaaggtc agcaatcata
3541 agattgtcgc ccactgcaag gacgatatac cgctggatac gctgctcaag acgaatgact
3601 cggcgatcgc caccacccag agtgcacaga agatctatcg cgttgaggag gtgcccacag
3661 atgagatgca gctggccgag aatgaatatc tgttgccggt ggcccatttc agcaaggagc
3721 tgtacaactc gtttggcgta cccttcctca ccaaggcgcg tcatggggag ccctatgggg
3781 tcctcaagca gcgcatacag aagcgtctta atgtcccgga caaggagtgg gagaactaca
3841 agttcaccgt gatcaatacg ggcatcacca ctgaggtgaa cgacaacgat gtcatcaatt
3901 tggagaattt ccgcacctcg actagcggac agttgccctt ccttggtctc gatcacatca
3961 acaagtcacg caagcgtagt tcgctgaatt tctccgagaa ggcgatcaaa atttacaatt
4021 aaattgaaca cacacacaca catacacaca cacaagaaac aagaaagcag atggagcaga
4081 tggatggtgg ttctgcgagt ggaggtggag gcaagcgagg ctaggaggag gctgctgtaa
4141 ctgggactgg gtcgaaaatt gggcgagacg ggaagcaaag acgtgacgac atccatccat
4201 cgatcgacac gcgcccgccg cccgaaaaca caaattttaa gcaaattgtc cttaaaattg
4261 tatgcctcct actccaactc ccactccctc aaaacgggcc catcaccccc cgcccacttc
4321 ttctgaaccc aaaagtagaa attgacgtgg attttttttt aataatatta tttctaagtc
4381 ataaaattta tttattaatc gcctccggtc aatttttaat atggttgtcc gcccgatcct
4441 acacccagag tttgccttcc ctccccccgc tgcggctccg gcctaaactc caggtccggc
4501 ccgagcctca cggcactaag tccatgagaa agctaaaaaa aaaaaattta taaatttact
4561 gacttattgc gcttgcatta gtgacttcaa attctaggct aaggctttta aagtgtgttt
4621 atttaattaa tttttttttt cctctaattt tctaaatacg atattcctaa acgcggtaat
4681 tgttttgaag tcggaacgaa