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LOCUS XM_022354821 8286 bp mRNA linear INV 14-MAY-2021 (LOC111066313), transcript variant X3, mRNA. ACCESSION XM_022354821 VERSION XM_022354821.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022354821.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8286 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..8286 /gene="LOC111066313" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns" /db_xref="GeneID:111066313" CDS 789..5039 /gene="LOC111066313" /codon_start=1 /product="transcriptional regulator ovo" /protein_id="XP_022210513.2" /db_xref="GeneID:111066313" /translation="MNRNIRKSAGRRSRRTGRLRPLPLSPIPSHTHTLITQPPAAAAA EAAPPPILIAGGLGDNTMASSATNAASISRSTSTNSSSITALPSLFSSASASAAAAAA AATSKDMDGLIAINDSALSQQIEFILQDAPMEQDDDHQQHHHHHRHHHHHNHQHQHHQ PQPQSQQQHHHQPQQQQQQQQQQHQQQHLQPHHQLVVGAGAGGGTAAKLLENNHPPTT TTTAATATATNSASVSTYTTSSSSSSNSNTNSNNNHLEEHHHLMIQQQQQHLLNGRRV IIQSTGNSSTATVLAASDIKEEELDEEEEDPELNDENLQDIEEEAQAAEADEEPETTA QQHPHLQTRVKIEVEDDDMPEDDDDEEEDEDENMSVAHLQRQQQAQAQAQAQLEYQLQ STQAVGAGAQQLVQLPAGSLMSTSSTRTMTVPVTEAALVQLQRRPVYISNAVGGLSAG TTYVRMPGAAVISRSPMTVLNVVQQAAALPATQLILQAQSPTPQQQQQQQPQVDQQQQ QQMAINQQQQQQTQSQSQHPPQQQQQQLQLSSHPVKHQQASPASSSSPCSSSGSSGAS STGATASSSSSYQCMECVEKFESKELFDIHRSGHANNMKCAICNMVLKSLKNYEKHCL RCKPYECQICGRVVRFRPNFIKHMRVHTGQQSERHKYKCEVCHKEFMSFEYFKVHKKI HNENVNLTCEICGKVFSALASLRGHSKLHSGVKLHKCDVCGKGFGQRYNLKIHARTHT GDFPFECKICKKKLHTQSSLQTHMQVHLRDQPTAVATQQAKASNASASGSASSQNVGS TTNTNTNTTTTTTSTTHTSSISGGSNSSNSNSATSATATTIVKLEPPSDMDMPSTSTS NSNQLQQQHHSHHHQQQQQQLQQQHHQQQQQQHHHQMELDDHSGLSGDEDVNSSSHIV NSTTNRLTTGEDSSNESSNASLLNQPHSSSSAASISSSHSPSMLQQQVPPAASSQYLM STPSRTIVIKNYMQQQQQHAPAGQGQHHQQNASDQGAVLHTQVIQSGAGTSNSSSNSS SNGSGNAIVSNGAQQLIRKTPIIHHSTSGSGTLSSALASVVQQQHTGGVGVGSPAQSP QSSSSTSCSSTTVLVSKATGVPLSIASSAAAAAALAGSTIIRSTRNHHHIQQQQQQQQ QHSNSQSQQQQQRGSGAGTQQRNNHRNHHRRRHLADMDDDDDDDEDEDAATAAAQLQL QRHGQHTSMSVSPHHHQQQQQQQHHHSHQQQQQQLHHHHHHNHHFDDDDDDEKSSPSL ATAAIKVEPNLYSSGSGDNSNDMFIKEEVMFEDSAAPHSPQSPPSSKFRISNFDSDLV DHHVDLNHSLPPYGNLFEPHSIPDSIPVQLYPDDDDDFRLDHSSLGGLHNTSSSTTDG DFIKKEWVYGTGTSSYAMNGKFDDDSDALCDAANFIYN" misc_feature 2604..2666 /gene="LOC111066313" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2679..2741 /gene="LOC111066313" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2775..2837 /gene="LOC111066313" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2859..2921 /gene="LOC111066313" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(2874..2876,2880..2882,2886..2888,2892..2897, 2904..2909,2916..2918,2958..2960,2964..2966,2976..2981, 2988..2993,3000..3002,3042..3044,3048..3050,3054..3056, 3060..3065,3072..3077,3084..3086) /gene="LOC111066313" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 2937..>3113 /gene="LOC111066313" /note="N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins; Region: SUF4-like; cd20908" /db_xref="CDD:411020" misc_feature 2943..3008 /gene="LOC111066313" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:411020" misc_feature 2943..3005 /gene="LOC111066313" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(2958..2960,2985..2987,2997..2999,3003..3005, 3024..3026,3045..3047) /gene="LOC111066313" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:411020" misc_feature 3027..3089 /gene="LOC111066313" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:411020" misc_feature 3027..3089 /gene="LOC111066313" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" ORIGIN 1 cacacaaaca cacggctcgc acacggggga gcaatttttg ttattattga acagaaagaa 61 catcgcaaaa aaaaattaat aaaagacagc ttccgaagct gggtgcaaaa gcgtacgtaa 121 ttgcacaaaa aaagtgtaat cgaaaggaaa ggagaagcag cagcagcaga aggaagacac 181 aacaataaaa acgagaggaa atcaataata ataataacaa taaggcagta aataacagaa 241 gaaagaacag cagaagtggg agccgtagcg cagcggccgg acctgtgcct gtgtgtgtgt 301 gtgtgtgtgt gcgtgcgtgc gtgcgtgtgc gtgcatatag catgtagtat tgttgtaaca 361 aacaaaacga aaggcggcca acaacaacat acaacaagaa aacataatga aagcaaatga 421 gccaaatcaa gcagcagaag catcagcagc agccgcgtcc aacgtcgacg acgacgtagc 481 agccgccgat gccgccgacg cacgggaagc accgaaaacc gcatgacaag gaaatggaaa 541 attttgttga aaattctttg gaaaagcgaa cgaacaacgc gaatcaaaaa ttaacaagaa 601 ttcaaagtaa atcacagaaa cagagccact aaaaaaagaa gaagcaccag ccgggcgccg 661 caccagtaac aataaataaa agaagcagcc taaataaact aaagacgaag acgacgacaa 721 agacgaagac gaggaagaag aataagaaac agcagtagag cagaagcaga gaagaaacaa 781 agcagtgcat gaataggaat ataagaaaaa gtgcaggaag aagaagcagg agaaccggca 841 ggttgcgccc cctccctctc tcacccatac catctcacac acacactctt atcacccaac 901 caccagcagc agcagcagca gaagcagctc caccacccat tctcatagca ggaggactgg 961 gggataatac catggcaagc agtgcaacaa atgcagcaag catcagccgc agcacaagca 1021 caaacagtag cagtatcact gcactgccat cactattctc atctgcatcc gcctccgccg 1081 ccgccgctgc tgcagcagcc acctcaaagg acatggacgg actgattgcc attaatgata 1141 gcgcattatc gcaacaaatc gaatttatac tacaagatgc tcccatggag caggatgatg 1201 accatcaaca gcaccaccac caccaccggc accaccatca ccacaaccat cagcatcaac 1261 accaccagcc gcagccacag tcgcagcagc agcaccacca ccagccgcaa cagcaacagc 1321 agcagcagca gcaacagcat caacaacagc atctgcaacc acatcatcag ctggtagtag 1381 gagctggggc tggaggtgga acagcggcca agctcctcga gaataaccac ccaccgacaa 1441 caacaaccac tgcagcaacc gcaacggcaa ccaacagtgc ttccgtttcc acctacacca 1501 ctagcagcag cagcagcagc aacagcaaca ccaacagcaa taacaatcac ctggaggagc 1561 atcaccacct gatgatccaa cagcagcaac agcatctgct taatggccgg cgtgttatca 1621 tccagtcgac cggcaacagc agcacggcca cagtactggc cgccagcgac atcaaggagg 1681 aggagctgga cgaggaggag gaggatcccg agctgaacga tgagaatctg caggatatcg 1741 aggaggaggc ccaggcggcc gaagccgacg aggagccaga gacgaccgca cagcagcatc 1801 cgcatcttca gactcgcgtc aagatcgagg tggaggacga cgatatgccc gaagacgatg 1861 acgatgagga agaggacgaa gacgagaaca tgtcggtggc ccatctccag cggcagcaac 1921 aggcacaagc ccaggcccag gcccaattgg aatatcaact gcaatcgacg caagcggtcg 1981 gggcaggcgc ccaacaattg gtgcagctgc ccgccggcag tctaatgagc acctcgagta 2041 ctcgcactat gactgtgccc gtcaccgagg cggcacttgt ccagctgcag cgccgtcccg 2101 tgtatatcag caatgctgtg ggcggactgt ccgccggcac cacctatgta cgaatgccag 2161 gagcggccgt gatcagccgc agtccgatga cggtgctgaa tgtggtgcaa caggcggcgg 2221 ctctacccgc cacccaattg atcctgcagg cccagagccc aacgccacaa caacagcagc 2281 aacagcagcc ccaagtcgat cagcagcagc agcagcaaat ggccattaac caacagcagc 2341 agcagcagac acaatcgcaa tcacagcatc cgccacagca acagcagcag cagctacagc 2401 tatcatccca tcccgtgaag caccaacaag catcgccagc atccagctct tccccatgca 2461 gcagtagcgg cagcagtgga gccagcagca cgggggccac cgccagctcg tcgagcagct 2521 accagtgtat ggagtgtgtg gagaaattcg aatcgaagga gctgttcgac atccatcgca 2581 gcgggcatgc caacaacatg aagtgcgcca tctgcaacat ggtgctcaag tcgctcaaga 2641 attacgagaa gcattgcctg cgatgcaagc cgtacgaatg ccagatctgc ggccgggtgg 2701 tgcgcttccg gcccaacttc atcaagcata tgcgtgtgca caccggccag cagtcggagc 2761 ggcacaagta caagtgcgag gtgtgccaca aggagttcat gagctttgaa tacttcaagg 2821 tgcacaagaa gatccacaac gagaatgtca acctcacctg cgagatctgt ggcaaggtgt 2881 tcagtgccct ggcctcgctg cgcggccact cgaaactcca ttcgggtgtc aagctgcaca 2941 agtgcgatgt ctgcggcaag ggatttggcc agcgctacaa cctaaagatc catgcccgca 3001 cccatacggg cgacttccca tttgagtgca aaatatgcaa gaagaagctc cacacacaat 3061 cctcgctgca aacgcacatg caggtccatc tcagggacca gccgacggca gtggccacgc 3121 agcaggcaaa ggctagcaat gccagtgcca gtggcagtgc cagcagccag aatgtgggga 3181 gcaccaccaa tactaatacc aataccacca ccaccaccac gagcaccacc cacaccagca 3241 gcatcagcgg cggcagcaac tcgagcaaca gcaacagtgc gacaagcgct acggccacaa 3301 cgatcgtcaa actggagccg ccaagcgata tggatatgcc cagcactagc acaagcaaca 3361 gcaatcagct gcaacagcag caccactctc accaccacca acaacaacag caacagctgc 3421 agcagcagca tcatcagcag cagcagcagc agcaccacca ccaaatggaa ttggacgacc 3481 attctggcct cagtggggac gaggatgtga actcttcctc gcatattgtc aactcaacca 3541 ccaatcgctt gaccaccggt gaggactcat ccaatgagtc ctcaaatgcc tcgctactca 3601 atcagccgca ctcctcctca tccgcagcta gcatcagctc ctcgcattca ccatctatgc 3661 tgcagcagca ggtgccgcct gcagcatcgt cgcagtatct catgtccacg ccctcacgga 3721 cgattgtcat caagaactac atgcagcaac agcagcaaca tgcaccagcg ggacagggac 3781 agcatcatca acagaacgct tctgatcagg gtgctgtact ccatacgcag gtcatccaaa 3841 gcggtgcagg caccagcaac agcagcagca acagcagcag caatggcagc gggaacgcca 3901 tcgttagcaa tggtgcacag caattgatac gcaagacgcc catcattcat cactcaacga 3961 gtggcagtgg cacactgagc tccgctttgg ccagcgtggt gcagcaacaa catacaggag 4021 gagtgggagt tggttcgccc gctcaatcgc cacagtcatc atcgtcaacg tcttgctcct 4081 ccaccactgt gctggtgtca aaggccacgg gtgtacccct atcgatagca tcttcggcag 4141 cggcggcggc tgcgctggcc ggctcaacca tcatacggag cacacgcaat catcatcata 4201 tacagcaaca gcagcaacag cagcagcagc atagcaacag ccagagtcag cagcaacagc 4261 agcgtggatc aggagctggc acgcagcagc gcaataacca ccgaaatcac caccgacgtc 4321 gtcatcttgc agacatggac gatgatgacg atgacgacga ggatgaagac gcagccacag 4381 cagccgctca attgcagttg cagcgccatg gccaacatac gtcaatgtcc gtcagccccc 4441 accaccacca gcaacagcag cagcagcagc accatcattc gcatcagcag caacagcagc 4501 agctccatca tcatcatcat cacaatcatc atttcgatga tgacgatgat gatgagaaat 4561 catcaccgtc cctggccaca gcggccatca aggtggaacc gaatctctat tcctccggct 4621 ccggcgacaa ctctaacgat atgttcatca aagaggaggt gatgttcgag gattcggccg 4681 ccccacattc accacaatcg ccgcccagct caaagtttcg catctcgaac tttgatagcg 4741 atctggtcga tcatcatgtc gatttgaatc actcgctacc gccgtatggt aacctgtttg 4801 agccgcattc gatacccgat agcatacccg tgcaactcta tccggatgat gatgatgact 4861 ttcggctgga ccatagctcg ctgggtggac tgcataatac atcgtcatcg acaacagatg 4921 gcgactttat caaaaaggaa tgggtctatg gcactggcac cagttcctat gccatgaatg 4981 gcaaattcga tgatgacagc gatgccctat gcgatgctgc taatttcata tacaattgag 5041 agagtgtcgt cgtctcgcaa ttgtcgggca ggccagagag gagcgacagg aaaggaaata 5101 gcaacaggat atggaaatgg aaatgcatac gcacattttg gcaagacaat tgcttggata 5161 tatatatata tatatatgta tatgtatatg atatatatct ctctctatcc ctggtcacct 5221 cttctgtgac accttttaaa tgcaatcaat aacacccagc ccaacacacc accacacaca 5281 cacaccaaca acatagatat acatgtatag attgatatat gtgtgtatgt atatgtgtat 5341 atatatatat acatgccaca cacacacaca cctctagata atttgctatc tccgtgttgc 5401 gctcgtgatg atcttaacgt gatcttaagt ctagatatgt gtagagtgta gaattttgat 5461 atactctatc tctctctctc tctttctgtt ttaccttttt ttcgcctaac ccccccaacc 5521 acccgaattt cctgtgtgtc gccctacttc tatgtgtgtc gtcattttat ttaatctctc 5581 tctgtctctc tctgttgtag ttttttgtgc atattgacct ctcactctaa gtcgctcacc 5641 atatatattt ccgtctcgct ctctctgtct gtctttgctg tcactgtctc attctctgat 5701 gttttgagta tagagtactc cctcctccca cgaagcctca caaaaggaaa accacttact 5761 tgctcgtctt cctcaatgat gtgtagtgta aacgagacct gatcctcccc cctccccctc 5821 acccaactcc ttctccaaac cagccattct gaaatctgct aaaaacaaag aaacaggaag 5881 aaaaattgta tgtaaaacaa tcatttttat tgttataagg tattttttat ttatatattg 5941 agaaatcttt ctatatatga ttagcgtcca gaacgcacga tatgcaagat atagtaatta 6001 tacatatact atatagaagc tctatatata attttgtata cgatccaatc ctaagtttaa 6061 ttagtttttg catttgatct ctaacttcca cataaatttg gctttaatat ttgcaaccca 6121 aaaacaaaag aattgtagtt cctgtttaat ggcaaagaaa actggaggaa atcgtataat 6181 gattttatat atacaacata tagattatgc gcttaaattg tacagatata tgtatcttgt 6241 atatgtgtat gtatgatgat tatgagatgg cttgtggctg gccttctcta tatggaaaga 6301 tctctcattc tcgttgtgtc actactaaaa agattgttca gtattttgat cccaaaaaga 6361 aaagaaaaaa aaacaatcga aactgaaagc aaaatgatct atatatagta catatatata 6421 acgaatctgc acgcactctg atatgcttta attttattcg attcgatttt gattatttga 6481 cttacctaaa gcgcagtatt tgttggtcct tttattcgag aatccattaa ttttttattt 6541 tattttacag cacacacaca catcctaata tataaatatt tagtttttag tgtaattaga 6601 tccttttttt gtgttttttt tttctttgta taattttttt aagaattcag tgctcgattt 6661 gtgccgctgc ttgtataaca gcgccgctac cttataaacc tgttctaatg tgcaatctct 6721 cgcttgcccc cctaccccca aatcctaccc tctacccgca aaccctaccc tctacccgtc 6781 tcacacgaac ccttaaatag ttgctaagtt cttcagattc acacaaatat ttatatatat 6841 atatattctc acatgtatga tttgcattaa atatatatat tatatatgta tgcgtacaga 6901 taaactgtag ctaagcgtaa gcccctaccc tacccatttg tgtgtagtct cataacctga 6961 aagagcatgg ttttagccct agctttacct taacacacga aactgcttgt aaaaacatat 7021 ttaacacaaa agaagaacac agacacacac accacaccct ccatatatac atacatagat 7081 agatctttag cgttaacaat tttaatttgc atttacaact ttttttgttt gtttgtgtac 7141 tcgtttgtat ttttcctcct tcgtttgcag agagacaaac aattaaaaat aatttaagat 7201 aaaaagaaaa gcaaacagga cgcaacacat gcatatatat atatatatat atttatatat 7261 tgaacaatgt atgtgggatc ggaagatgat gatgcaataa gaggagtaca ttaaacagaa 7321 acttctatca aaagcattta atgttaacaa aaagaaaaaa aagaaaattc ataataaatc 7381 gatataaatt aaatacaaaa atatatataa agtatacaaa tctaaagaaa aaattagcca 7441 acaattttaa aatgtagctg aagaatttta atttttttgt ttgaaatttg tgttggtttt 7501 tgcgtagaag atacaaattt gtcccccaat ccccccattc atttattttg tgcattttac 7561 gctgctgctt ttttgcgcat catattaaca taaatgttta atattggtaa ttgttgttgc 7621 ttgccatttt gtttgttact aaaagaaata tattaccaag aacattaagt acacacgcac 7681 acaaacatat gcacatacac atacgtgtct atacgtacgt atagagaaaa gctcaaagaa 7741 aaatgaaaaa taatacgcgc aaaaagaata cgttttacat ttgaaaccta actttatgga 7801 tttgtcttcc gcacgcacgt tcaaacagtt cttcgattac gttcgaatgt tgttcgatgt 7861 atgtacaaat tgccaatcgt aatgatatcg atcaagccga cgattgacga tatcaaacga 7921 tagccgctag ctaacccagc cctcccctcc ccctcgccgt ttacattgca ttctttgctg 7981 gaagagtgcc cagcaagaaa tcagaacgag acaagtaaaa gtggcagcaa aatgccttca 8041 aaaatggtga gaactgcccc ctgcctaagt cccgcaaacc cataagccac caactcattt 8101 gccgccagca ttctgaatag aaaaataaaa ccacagaaga aggagtcctc caagtccccc 8161 ccccccctcc tgcccgtaac aaatctcagt tgaactaatg aaacagaagc aatttaaaat 8221 taaattaaat aaaagttata catttttgta catttgaaaa ctgaaataga gttacaaaac 8281 aaaaag