PREDICTED: Drosophila obscura transcriptional regulator ovo
LOCUS XM_022354821 8286 bp mRNA linear INV 14-MAY-2021
(LOC111066313), transcript variant X3, mRNA.
ACCESSION XM_022354821
VERSION XM_022354821.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022354821.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..8286
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..8286
/gene="LOC111066313"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 6 Proteins, and 99% coverage of
the annotated genomic feature by RNAseq alignments,
including 10 samples with support for all annotated
introns"
/db_xref="GeneID:111066313"
CDS 789..5039
/gene="LOC111066313"
/codon_start=1
/product="transcriptional regulator ovo"
/protein_id="XP_022210513.2"
/db_xref="GeneID:111066313"
/translation="MNRNIRKSAGRRSRRTGRLRPLPLSPIPSHTHTLITQPPAAAAA
EAAPPPILIAGGLGDNTMASSATNAASISRSTSTNSSSITALPSLFSSASASAAAAAA
AATSKDMDGLIAINDSALSQQIEFILQDAPMEQDDDHQQHHHHHRHHHHHNHQHQHHQ
PQPQSQQQHHHQPQQQQQQQQQQHQQQHLQPHHQLVVGAGAGGGTAAKLLENNHPPTT
TTTAATATATNSASVSTYTTSSSSSSNSNTNSNNNHLEEHHHLMIQQQQQHLLNGRRV
IIQSTGNSSTATVLAASDIKEEELDEEEEDPELNDENLQDIEEEAQAAEADEEPETTA
QQHPHLQTRVKIEVEDDDMPEDDDDEEEDEDENMSVAHLQRQQQAQAQAQAQLEYQLQ
STQAVGAGAQQLVQLPAGSLMSTSSTRTMTVPVTEAALVQLQRRPVYISNAVGGLSAG
TTYVRMPGAAVISRSPMTVLNVVQQAAALPATQLILQAQSPTPQQQQQQQPQVDQQQQ
QQMAINQQQQQQTQSQSQHPPQQQQQQLQLSSHPVKHQQASPASSSSPCSSSGSSGAS
STGATASSSSSYQCMECVEKFESKELFDIHRSGHANNMKCAICNMVLKSLKNYEKHCL
RCKPYECQICGRVVRFRPNFIKHMRVHTGQQSERHKYKCEVCHKEFMSFEYFKVHKKI
HNENVNLTCEICGKVFSALASLRGHSKLHSGVKLHKCDVCGKGFGQRYNLKIHARTHT
GDFPFECKICKKKLHTQSSLQTHMQVHLRDQPTAVATQQAKASNASASGSASSQNVGS
TTNTNTNTTTTTTSTTHTSSISGGSNSSNSNSATSATATTIVKLEPPSDMDMPSTSTS
NSNQLQQQHHSHHHQQQQQQLQQQHHQQQQQQHHHQMELDDHSGLSGDEDVNSSSHIV
NSTTNRLTTGEDSSNESSNASLLNQPHSSSSAASISSSHSPSMLQQQVPPAASSQYLM
STPSRTIVIKNYMQQQQQHAPAGQGQHHQQNASDQGAVLHTQVIQSGAGTSNSSSNSS
SNGSGNAIVSNGAQQLIRKTPIIHHSTSGSGTLSSALASVVQQQHTGGVGVGSPAQSP
QSSSSTSCSSTTVLVSKATGVPLSIASSAAAAAALAGSTIIRSTRNHHHIQQQQQQQQ
QHSNSQSQQQQQRGSGAGTQQRNNHRNHHRRRHLADMDDDDDDDEDEDAATAAAQLQL
QRHGQHTSMSVSPHHHQQQQQQQHHHSHQQQQQQLHHHHHHNHHFDDDDDDEKSSPSL
ATAAIKVEPNLYSSGSGDNSNDMFIKEEVMFEDSAAPHSPQSPPSSKFRISNFDSDLV
DHHVDLNHSLPPYGNLFEPHSIPDSIPVQLYPDDDDDFRLDHSSLGGLHNTSSSTTDG
DFIKKEWVYGTGTSSYAMNGKFDDDSDALCDAANFIYN"
misc_feature 2604..2666
/gene="LOC111066313"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2679..2741
/gene="LOC111066313"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2775..2837
/gene="LOC111066313"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2859..2921
/gene="LOC111066313"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(2874..2876,2880..2882,2886..2888,2892..2897,
2904..2909,2916..2918,2958..2960,2964..2966,2976..2981,
2988..2993,3000..3002,3042..3044,3048..3050,3054..3056,
3060..3065,3072..3077,3084..3086)
/gene="LOC111066313"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 2937..>3113
/gene="LOC111066313"
/note="N-terminal domain of Oryza sativa transcription
factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
SUF4 (AtSUF4), and similar proteins; Region: SUF4-like;
cd20908"
/db_xref="CDD:411020"
misc_feature 2943..3008
/gene="LOC111066313"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:411020"
misc_feature 2943..3005
/gene="LOC111066313"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(2958..2960,2985..2987,2997..2999,3003..3005,
3024..3026,3045..3047)
/gene="LOC111066313"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:411020"
misc_feature 3027..3089
/gene="LOC111066313"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:411020"
misc_feature 3027..3089
/gene="LOC111066313"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
ORIGIN
1 cacacaaaca cacggctcgc acacggggga gcaatttttg ttattattga acagaaagaa
61 catcgcaaaa aaaaattaat aaaagacagc ttccgaagct gggtgcaaaa gcgtacgtaa
121 ttgcacaaaa aaagtgtaat cgaaaggaaa ggagaagcag cagcagcaga aggaagacac
181 aacaataaaa acgagaggaa atcaataata ataataacaa taaggcagta aataacagaa
241 gaaagaacag cagaagtggg agccgtagcg cagcggccgg acctgtgcct gtgtgtgtgt
301 gtgtgtgtgt gcgtgcgtgc gtgcgtgtgc gtgcatatag catgtagtat tgttgtaaca
361 aacaaaacga aaggcggcca acaacaacat acaacaagaa aacataatga aagcaaatga
421 gccaaatcaa gcagcagaag catcagcagc agccgcgtcc aacgtcgacg acgacgtagc
481 agccgccgat gccgccgacg cacgggaagc accgaaaacc gcatgacaag gaaatggaaa
541 attttgttga aaattctttg gaaaagcgaa cgaacaacgc gaatcaaaaa ttaacaagaa
601 ttcaaagtaa atcacagaaa cagagccact aaaaaaagaa gaagcaccag ccgggcgccg
661 caccagtaac aataaataaa agaagcagcc taaataaact aaagacgaag acgacgacaa
721 agacgaagac gaggaagaag aataagaaac agcagtagag cagaagcaga gaagaaacaa
781 agcagtgcat gaataggaat ataagaaaaa gtgcaggaag aagaagcagg agaaccggca
841 ggttgcgccc cctccctctc tcacccatac catctcacac acacactctt atcacccaac
901 caccagcagc agcagcagca gaagcagctc caccacccat tctcatagca ggaggactgg
961 gggataatac catggcaagc agtgcaacaa atgcagcaag catcagccgc agcacaagca
1021 caaacagtag cagtatcact gcactgccat cactattctc atctgcatcc gcctccgccg
1081 ccgccgctgc tgcagcagcc acctcaaagg acatggacgg actgattgcc attaatgata
1141 gcgcattatc gcaacaaatc gaatttatac tacaagatgc tcccatggag caggatgatg
1201 accatcaaca gcaccaccac caccaccggc accaccatca ccacaaccat cagcatcaac
1261 accaccagcc gcagccacag tcgcagcagc agcaccacca ccagccgcaa cagcaacagc
1321 agcagcagca gcaacagcat caacaacagc atctgcaacc acatcatcag ctggtagtag
1381 gagctggggc tggaggtgga acagcggcca agctcctcga gaataaccac ccaccgacaa
1441 caacaaccac tgcagcaacc gcaacggcaa ccaacagtgc ttccgtttcc acctacacca
1501 ctagcagcag cagcagcagc aacagcaaca ccaacagcaa taacaatcac ctggaggagc
1561 atcaccacct gatgatccaa cagcagcaac agcatctgct taatggccgg cgtgttatca
1621 tccagtcgac cggcaacagc agcacggcca cagtactggc cgccagcgac atcaaggagg
1681 aggagctgga cgaggaggag gaggatcccg agctgaacga tgagaatctg caggatatcg
1741 aggaggaggc ccaggcggcc gaagccgacg aggagccaga gacgaccgca cagcagcatc
1801 cgcatcttca gactcgcgtc aagatcgagg tggaggacga cgatatgccc gaagacgatg
1861 acgatgagga agaggacgaa gacgagaaca tgtcggtggc ccatctccag cggcagcaac
1921 aggcacaagc ccaggcccag gcccaattgg aatatcaact gcaatcgacg caagcggtcg
1981 gggcaggcgc ccaacaattg gtgcagctgc ccgccggcag tctaatgagc acctcgagta
2041 ctcgcactat gactgtgccc gtcaccgagg cggcacttgt ccagctgcag cgccgtcccg
2101 tgtatatcag caatgctgtg ggcggactgt ccgccggcac cacctatgta cgaatgccag
2161 gagcggccgt gatcagccgc agtccgatga cggtgctgaa tgtggtgcaa caggcggcgg
2221 ctctacccgc cacccaattg atcctgcagg cccagagccc aacgccacaa caacagcagc
2281 aacagcagcc ccaagtcgat cagcagcagc agcagcaaat ggccattaac caacagcagc
2341 agcagcagac acaatcgcaa tcacagcatc cgccacagca acagcagcag cagctacagc
2401 tatcatccca tcccgtgaag caccaacaag catcgccagc atccagctct tccccatgca
2461 gcagtagcgg cagcagtgga gccagcagca cgggggccac cgccagctcg tcgagcagct
2521 accagtgtat ggagtgtgtg gagaaattcg aatcgaagga gctgttcgac atccatcgca
2581 gcgggcatgc caacaacatg aagtgcgcca tctgcaacat ggtgctcaag tcgctcaaga
2641 attacgagaa gcattgcctg cgatgcaagc cgtacgaatg ccagatctgc ggccgggtgg
2701 tgcgcttccg gcccaacttc atcaagcata tgcgtgtgca caccggccag cagtcggagc
2761 ggcacaagta caagtgcgag gtgtgccaca aggagttcat gagctttgaa tacttcaagg
2821 tgcacaagaa gatccacaac gagaatgtca acctcacctg cgagatctgt ggcaaggtgt
2881 tcagtgccct ggcctcgctg cgcggccact cgaaactcca ttcgggtgtc aagctgcaca
2941 agtgcgatgt ctgcggcaag ggatttggcc agcgctacaa cctaaagatc catgcccgca
3001 cccatacggg cgacttccca tttgagtgca aaatatgcaa gaagaagctc cacacacaat
3061 cctcgctgca aacgcacatg caggtccatc tcagggacca gccgacggca gtggccacgc
3121 agcaggcaaa ggctagcaat gccagtgcca gtggcagtgc cagcagccag aatgtgggga
3181 gcaccaccaa tactaatacc aataccacca ccaccaccac gagcaccacc cacaccagca
3241 gcatcagcgg cggcagcaac tcgagcaaca gcaacagtgc gacaagcgct acggccacaa
3301 cgatcgtcaa actggagccg ccaagcgata tggatatgcc cagcactagc acaagcaaca
3361 gcaatcagct gcaacagcag caccactctc accaccacca acaacaacag caacagctgc
3421 agcagcagca tcatcagcag cagcagcagc agcaccacca ccaaatggaa ttggacgacc
3481 attctggcct cagtggggac gaggatgtga actcttcctc gcatattgtc aactcaacca
3541 ccaatcgctt gaccaccggt gaggactcat ccaatgagtc ctcaaatgcc tcgctactca
3601 atcagccgca ctcctcctca tccgcagcta gcatcagctc ctcgcattca ccatctatgc
3661 tgcagcagca ggtgccgcct gcagcatcgt cgcagtatct catgtccacg ccctcacgga
3721 cgattgtcat caagaactac atgcagcaac agcagcaaca tgcaccagcg ggacagggac
3781 agcatcatca acagaacgct tctgatcagg gtgctgtact ccatacgcag gtcatccaaa
3841 gcggtgcagg caccagcaac agcagcagca acagcagcag caatggcagc gggaacgcca
3901 tcgttagcaa tggtgcacag caattgatac gcaagacgcc catcattcat cactcaacga
3961 gtggcagtgg cacactgagc tccgctttgg ccagcgtggt gcagcaacaa catacaggag
4021 gagtgggagt tggttcgccc gctcaatcgc cacagtcatc atcgtcaacg tcttgctcct
4081 ccaccactgt gctggtgtca aaggccacgg gtgtacccct atcgatagca tcttcggcag
4141 cggcggcggc tgcgctggcc ggctcaacca tcatacggag cacacgcaat catcatcata
4201 tacagcaaca gcagcaacag cagcagcagc atagcaacag ccagagtcag cagcaacagc
4261 agcgtggatc aggagctggc acgcagcagc gcaataacca ccgaaatcac caccgacgtc
4321 gtcatcttgc agacatggac gatgatgacg atgacgacga ggatgaagac gcagccacag
4381 cagccgctca attgcagttg cagcgccatg gccaacatac gtcaatgtcc gtcagccccc
4441 accaccacca gcaacagcag cagcagcagc accatcattc gcatcagcag caacagcagc
4501 agctccatca tcatcatcat cacaatcatc atttcgatga tgacgatgat gatgagaaat
4561 catcaccgtc cctggccaca gcggccatca aggtggaacc gaatctctat tcctccggct
4621 ccggcgacaa ctctaacgat atgttcatca aagaggaggt gatgttcgag gattcggccg
4681 ccccacattc accacaatcg ccgcccagct caaagtttcg catctcgaac tttgatagcg
4741 atctggtcga tcatcatgtc gatttgaatc actcgctacc gccgtatggt aacctgtttg
4801 agccgcattc gatacccgat agcatacccg tgcaactcta tccggatgat gatgatgact
4861 ttcggctgga ccatagctcg ctgggtggac tgcataatac atcgtcatcg acaacagatg
4921 gcgactttat caaaaaggaa tgggtctatg gcactggcac cagttcctat gccatgaatg
4981 gcaaattcga tgatgacagc gatgccctat gcgatgctgc taatttcata tacaattgag
5041 agagtgtcgt cgtctcgcaa ttgtcgggca ggccagagag gagcgacagg aaaggaaata
5101 gcaacaggat atggaaatgg aaatgcatac gcacattttg gcaagacaat tgcttggata
5161 tatatatata tatatatgta tatgtatatg atatatatct ctctctatcc ctggtcacct
5221 cttctgtgac accttttaaa tgcaatcaat aacacccagc ccaacacacc accacacaca
5281 cacaccaaca acatagatat acatgtatag attgatatat gtgtgtatgt atatgtgtat
5341 atatatatat acatgccaca cacacacaca cctctagata atttgctatc tccgtgttgc
5401 gctcgtgatg atcttaacgt gatcttaagt ctagatatgt gtagagtgta gaattttgat
5461 atactctatc tctctctctc tctttctgtt ttaccttttt ttcgcctaac ccccccaacc
5521 acccgaattt cctgtgtgtc gccctacttc tatgtgtgtc gtcattttat ttaatctctc
5581 tctgtctctc tctgttgtag ttttttgtgc atattgacct ctcactctaa gtcgctcacc
5641 atatatattt ccgtctcgct ctctctgtct gtctttgctg tcactgtctc attctctgat
5701 gttttgagta tagagtactc cctcctccca cgaagcctca caaaaggaaa accacttact
5761 tgctcgtctt cctcaatgat gtgtagtgta aacgagacct gatcctcccc cctccccctc
5821 acccaactcc ttctccaaac cagccattct gaaatctgct aaaaacaaag aaacaggaag
5881 aaaaattgta tgtaaaacaa tcatttttat tgttataagg tattttttat ttatatattg
5941 agaaatcttt ctatatatga ttagcgtcca gaacgcacga tatgcaagat atagtaatta
6001 tacatatact atatagaagc tctatatata attttgtata cgatccaatc ctaagtttaa
6061 ttagtttttg catttgatct ctaacttcca cataaatttg gctttaatat ttgcaaccca
6121 aaaacaaaag aattgtagtt cctgtttaat ggcaaagaaa actggaggaa atcgtataat
6181 gattttatat atacaacata tagattatgc gcttaaattg tacagatata tgtatcttgt
6241 atatgtgtat gtatgatgat tatgagatgg cttgtggctg gccttctcta tatggaaaga
6301 tctctcattc tcgttgtgtc actactaaaa agattgttca gtattttgat cccaaaaaga
6361 aaagaaaaaa aaacaatcga aactgaaagc aaaatgatct atatatagta catatatata
6421 acgaatctgc acgcactctg atatgcttta attttattcg attcgatttt gattatttga
6481 cttacctaaa gcgcagtatt tgttggtcct tttattcgag aatccattaa ttttttattt
6541 tattttacag cacacacaca catcctaata tataaatatt tagtttttag tgtaattaga
6601 tccttttttt gtgttttttt tttctttgta taattttttt aagaattcag tgctcgattt
6661 gtgccgctgc ttgtataaca gcgccgctac cttataaacc tgttctaatg tgcaatctct
6721 cgcttgcccc cctaccccca aatcctaccc tctacccgca aaccctaccc tctacccgtc
6781 tcacacgaac ccttaaatag ttgctaagtt cttcagattc acacaaatat ttatatatat
6841 atatattctc acatgtatga tttgcattaa atatatatat tatatatgta tgcgtacaga
6901 taaactgtag ctaagcgtaa gcccctaccc tacccatttg tgtgtagtct cataacctga
6961 aagagcatgg ttttagccct agctttacct taacacacga aactgcttgt aaaaacatat
7021 ttaacacaaa agaagaacac agacacacac accacaccct ccatatatac atacatagat
7081 agatctttag cgttaacaat tttaatttgc atttacaact ttttttgttt gtttgtgtac
7141 tcgtttgtat ttttcctcct tcgtttgcag agagacaaac aattaaaaat aatttaagat
7201 aaaaagaaaa gcaaacagga cgcaacacat gcatatatat atatatatat atttatatat
7261 tgaacaatgt atgtgggatc ggaagatgat gatgcaataa gaggagtaca ttaaacagaa
7321 acttctatca aaagcattta atgttaacaa aaagaaaaaa aagaaaattc ataataaatc
7381 gatataaatt aaatacaaaa atatatataa agtatacaaa tctaaagaaa aaattagcca
7441 acaattttaa aatgtagctg aagaatttta atttttttgt ttgaaatttg tgttggtttt
7501 tgcgtagaag atacaaattt gtcccccaat ccccccattc atttattttg tgcattttac
7561 gctgctgctt ttttgcgcat catattaaca taaatgttta atattggtaa ttgttgttgc
7621 ttgccatttt gtttgttact aaaagaaata tattaccaag aacattaagt acacacgcac
7681 acaaacatat gcacatacac atacgtgtct atacgtacgt atagagaaaa gctcaaagaa
7741 aaatgaaaaa taatacgcgc aaaaagaata cgttttacat ttgaaaccta actttatgga
7801 tttgtcttcc gcacgcacgt tcaaacagtt cttcgattac gttcgaatgt tgttcgatgt
7861 atgtacaaat tgccaatcgt aatgatatcg atcaagccga cgattgacga tatcaaacga
7921 tagccgctag ctaacccagc cctcccctcc ccctcgccgt ttacattgca ttctttgctg
7981 gaagagtgcc cagcaagaaa tcagaacgag acaagtaaaa gtggcagcaa aatgccttca
8041 aaaatggtga gaactgcccc ctgcctaagt cccgcaaacc cataagccac caactcattt
8101 gccgccagca ttctgaatag aaaaataaaa ccacagaaga aggagtcctc caagtccccc
8161 ccccccctcc tgcccgtaac aaatctcagt tgaactaatg aaacagaagc aatttaaaat
8221 taaattaaat aaaagttata catttttgta catttgaaaa ctgaaataga gttacaaaac
8281 aaaaag