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LOCUS XM_022354820 8318 bp mRNA linear INV 14-MAY-2021 (LOC111066313), transcript variant X2, mRNA. ACCESSION XM_022354820 VERSION XM_022354820.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022354820.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8318 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..8318 /gene="LOC111066313" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns" /db_xref="GeneID:111066313" CDS 821..5071 /gene="LOC111066313" /codon_start=1 /product="transcriptional regulator ovo" /protein_id="XP_022210512.2" /db_xref="GeneID:111066313" /translation="MNRNIRKSAGRRSRRTGRLRPLPLSPIPSHTHTLITQPPAAAAA EAAPPPILIAGGLGDNTMASSATNAASISRSTSTNSSSITALPSLFSSASASAAAAAA AATSKDMDGLIAINDSALSQQIEFILQDAPMEQDDDHQQHHHHHRHHHHHNHQHQHHQ PQPQSQQQHHHQPQQQQQQQQQQHQQQHLQPHHQLVVGAGAGGGTAAKLLENNHPPTT TTTAATATATNSASVSTYTTSSSSSSNSNTNSNNNHLEEHHHLMIQQQQQHLLNGRRV IIQSTGNSSTATVLAASDIKEEELDEEEEDPELNDENLQDIEEEAQAAEADEEPETTA QQHPHLQTRVKIEVEDDDMPEDDDDEEEDEDENMSVAHLQRQQQAQAQAQAQLEYQLQ STQAVGAGAQQLVQLPAGSLMSTSSTRTMTVPVTEAALVQLQRRPVYISNAVGGLSAG TTYVRMPGAAVISRSPMTVLNVVQQAAALPATQLILQAQSPTPQQQQQQQPQVDQQQQ QQMAINQQQQQQTQSQSQHPPQQQQQQLQLSSHPVKHQQASPASSSSPCSSSGSSGAS STGATASSSSSYQCMECVEKFESKELFDIHRSGHANNMKCAICNMVLKSLKNYEKHCL RCKPYECQICGRVVRFRPNFIKHMRVHTGQQSERHKYKCEVCHKEFMSFEYFKVHKKI HNENVNLTCEICGKVFSALASLRGHSKLHSGVKLHKCDVCGKGFGQRYNLKIHARTHT GDFPFECKICKKKLHTQSSLQTHMQVHLRDQPTAVATQQAKASNASASGSASSQNVGS TTNTNTNTTTTTTSTTHTSSISGGSNSSNSNSATSATATTIVKLEPPSDMDMPSTSTS NSNQLQQQHHSHHHQQQQQQLQQQHHQQQQQQHHHQMELDDHSGLSGDEDVNSSSHIV NSTTNRLTTGEDSSNESSNASLLNQPHSSSSAASISSSHSPSMLQQQVPPAASSQYLM STPSRTIVIKNYMQQQQQHAPAGQGQHHQQNASDQGAVLHTQVIQSGAGTSNSSSNSS SNGSGNAIVSNGAQQLIRKTPIIHHSTSGSGTLSSALASVVQQQHTGGVGVGSPAQSP QSSSSTSCSSTTVLVSKATGVPLSIASSAAAAAALAGSTIIRSTRNHHHIQQQQQQQQ QHSNSQSQQQQQRGSGAGTQQRNNHRNHHRRRHLADMDDDDDDDEDEDAATAAAQLQL QRHGQHTSMSVSPHHHQQQQQQQHHHSHQQQQQQLHHHHHHNHHFDDDDDDEKSSPSL ATAAIKVEPNLYSSGSGDNSNDMFIKEEVMFEDSAAPHSPQSPPSSKFRISNFDSDLV DHHVDLNHSLPPYGNLFEPHSIPDSIPVQLYPDDDDDFRLDHSSLGGLHNTSSSTTDG DFIKKEWVYGTGTSSYAMNGKFDDDSDALCDAANFIYN" misc_feature 2636..2698 /gene="LOC111066313" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2711..2773 /gene="LOC111066313" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2807..2869 /gene="LOC111066313" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2891..2953 /gene="LOC111066313" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(2906..2908,2912..2914,2918..2920,2924..2929, 2936..2941,2948..2950,2990..2992,2996..2998,3008..3013, 3020..3025,3032..3034,3074..3076,3080..3082,3086..3088, 3092..3097,3104..3109,3116..3118) /gene="LOC111066313" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 2969..>3145 /gene="LOC111066313" /note="N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins; Region: SUF4-like; cd20908" /db_xref="CDD:411020" misc_feature 2975..3040 /gene="LOC111066313" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:411020" misc_feature 2975..3037 /gene="LOC111066313" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(2990..2992,3017..3019,3029..3031,3035..3037, 3056..3058,3077..3079) /gene="LOC111066313" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:411020" misc_feature 3059..3121 /gene="LOC111066313" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:411020" misc_feature 3059..3121 /gene="LOC111066313" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" ORIGIN 1 cacacaaaca cacggctcgc acacggggga gcaatttttg ttattattga acagaaagaa 61 catcgcaaaa aaaaattaat aaaagacagc ttccgaagct gggtgcaaaa gcgtacggtt 121 ggttaaaaag tgtgaattgc tgcgaaaatt aattgcacaa aaaaagtgta atcgaaagga 181 aaggagaagc agcagcagca gaaggaagac acaacaataa aaacgagagg aaatcaataa 241 taataataac aataaggcag taaataacag aagaaagaac agcagaagtg ggagccgtag 301 cgcagcggcc ggacctgtgc ctgtgtgtgt gtgtgtgtgt gtgcgtgcgt gcgtgcgtgt 361 gcgtgcatat agcatgtagt attgttgtaa caaacaaaac gaaaggcggc caacaacaac 421 atacaacaag aaaacataat gaaagcaaat gagccaaatc aagcagcaga agcatcagca 481 gcagccgcgt ccaacgtcga cgacgacgta gcagccgccg atgccgccga cgcacgggaa 541 gcaccgaaaa ccgcatgaca aggaaatgga aaattttgtt gaaaattctt tggaaaagcg 601 aacgaacaac gcgaatcaaa aattaacaag aattcaaagt aaatcacaga aacagagcca 661 ctaaaaaaag aagaagcacc agccgggcgc cgcaccagta acaataaata aaagaagcag 721 cctaaataaa ctaaagacga agacgacgac aaagacgaag acgaggaaga agaataagaa 781 acagcagtag agcagaagca gagaagaaac aaagcagtgc atgaatagga atataagaaa 841 aagtgcagga agaagaagca ggagaaccgg caggttgcgc cccctccctc tctcacccat 901 accatctcac acacacactc ttatcaccca accaccagca gcagcagcag cagaagcagc 961 tccaccaccc attctcatag caggaggact gggggataat accatggcaa gcagtgcaac 1021 aaatgcagca agcatcagcc gcagcacaag cacaaacagt agcagtatca ctgcactgcc 1081 atcactattc tcatctgcat ccgcctccgc cgccgccgct gctgcagcag ccacctcaaa 1141 ggacatggac ggactgattg ccattaatga tagcgcatta tcgcaacaaa tcgaatttat 1201 actacaagat gctcccatgg agcaggatga tgaccatcaa cagcaccacc accaccaccg 1261 gcaccaccat caccacaacc atcagcatca acaccaccag ccgcagccac agtcgcagca 1321 gcagcaccac caccagccgc aacagcaaca gcagcagcag cagcaacagc atcaacaaca 1381 gcatctgcaa ccacatcatc agctggtagt aggagctggg gctggaggtg gaacagcggc 1441 caagctcctc gagaataacc acccaccgac aacaacaacc actgcagcaa ccgcaacggc 1501 aaccaacagt gcttccgttt ccacctacac cactagcagc agcagcagca gcaacagcaa 1561 caccaacagc aataacaatc acctggagga gcatcaccac ctgatgatcc aacagcagca 1621 acagcatctg cttaatggcc ggcgtgttat catccagtcg accggcaaca gcagcacggc 1681 cacagtactg gccgccagcg acatcaagga ggaggagctg gacgaggagg aggaggatcc 1741 cgagctgaac gatgagaatc tgcaggatat cgaggaggag gcccaggcgg ccgaagccga 1801 cgaggagcca gagacgaccg cacagcagca tccgcatctt cagactcgcg tcaagatcga 1861 ggtggaggac gacgatatgc ccgaagacga tgacgatgag gaagaggacg aagacgagaa 1921 catgtcggtg gcccatctcc agcggcagca acaggcacaa gcccaggccc aggcccaatt 1981 ggaatatcaa ctgcaatcga cgcaagcggt cggggcaggc gcccaacaat tggtgcagct 2041 gcccgccggc agtctaatga gcacctcgag tactcgcact atgactgtgc ccgtcaccga 2101 ggcggcactt gtccagctgc agcgccgtcc cgtgtatatc agcaatgctg tgggcggact 2161 gtccgccggc accacctatg tacgaatgcc aggagcggcc gtgatcagcc gcagtccgat 2221 gacggtgctg aatgtggtgc aacaggcggc ggctctaccc gccacccaat tgatcctgca 2281 ggcccagagc ccaacgccac aacaacagca gcaacagcag ccccaagtcg atcagcagca 2341 gcagcagcaa atggccatta accaacagca gcagcagcag acacaatcgc aatcacagca 2401 tccgccacag caacagcagc agcagctaca gctatcatcc catcccgtga agcaccaaca 2461 agcatcgcca gcatccagct cttccccatg cagcagtagc ggcagcagtg gagccagcag 2521 cacgggggcc accgccagct cgtcgagcag ctaccagtgt atggagtgtg tggagaaatt 2581 cgaatcgaag gagctgttcg acatccatcg cagcgggcat gccaacaaca tgaagtgcgc 2641 catctgcaac atggtgctca agtcgctcaa gaattacgag aagcattgcc tgcgatgcaa 2701 gccgtacgaa tgccagatct gcggccgggt ggtgcgcttc cggcccaact tcatcaagca 2761 tatgcgtgtg cacaccggcc agcagtcgga gcggcacaag tacaagtgcg aggtgtgcca 2821 caaggagttc atgagctttg aatacttcaa ggtgcacaag aagatccaca acgagaatgt 2881 caacctcacc tgcgagatct gtggcaaggt gttcagtgcc ctggcctcgc tgcgcggcca 2941 ctcgaaactc cattcgggtg tcaagctgca caagtgcgat gtctgcggca agggatttgg 3001 ccagcgctac aacctaaaga tccatgcccg cacccatacg ggcgacttcc catttgagtg 3061 caaaatatgc aagaagaagc tccacacaca atcctcgctg caaacgcaca tgcaggtcca 3121 tctcagggac cagccgacgg cagtggccac gcagcaggca aaggctagca atgccagtgc 3181 cagtggcagt gccagcagcc agaatgtggg gagcaccacc aatactaata ccaataccac 3241 caccaccacc acgagcacca cccacaccag cagcatcagc ggcggcagca actcgagcaa 3301 cagcaacagt gcgacaagcg ctacggccac aacgatcgtc aaactggagc cgccaagcga 3361 tatggatatg cccagcacta gcacaagcaa cagcaatcag ctgcaacagc agcaccactc 3421 tcaccaccac caacaacaac agcaacagct gcagcagcag catcatcagc agcagcagca 3481 gcagcaccac caccaaatgg aattggacga ccattctggc ctcagtgggg acgaggatgt 3541 gaactcttcc tcgcatattg tcaactcaac caccaatcgc ttgaccaccg gtgaggactc 3601 atccaatgag tcctcaaatg cctcgctact caatcagccg cactcctcct catccgcagc 3661 tagcatcagc tcctcgcatt caccatctat gctgcagcag caggtgccgc ctgcagcatc 3721 gtcgcagtat ctcatgtcca cgccctcacg gacgattgtc atcaagaact acatgcagca 3781 acagcagcaa catgcaccag cgggacaggg acagcatcat caacagaacg cttctgatca 3841 gggtgctgta ctccatacgc aggtcatcca aagcggtgca ggcaccagca acagcagcag 3901 caacagcagc agcaatggca gcgggaacgc catcgttagc aatggtgcac agcaattgat 3961 acgcaagacg cccatcattc atcactcaac gagtggcagt ggcacactga gctccgcttt 4021 ggccagcgtg gtgcagcaac aacatacagg aggagtggga gttggttcgc ccgctcaatc 4081 gccacagtca tcatcgtcaa cgtcttgctc ctccaccact gtgctggtgt caaaggccac 4141 gggtgtaccc ctatcgatag catcttcggc agcggcggcg gctgcgctgg ccggctcaac 4201 catcatacgg agcacacgca atcatcatca tatacagcaa cagcagcaac agcagcagca 4261 gcatagcaac agccagagtc agcagcaaca gcagcgtgga tcaggagctg gcacgcagca 4321 gcgcaataac caccgaaatc accaccgacg tcgtcatctt gcagacatgg acgatgatga 4381 cgatgacgac gaggatgaag acgcagccac agcagccgct caattgcagt tgcagcgcca 4441 tggccaacat acgtcaatgt ccgtcagccc ccaccaccac cagcaacagc agcagcagca 4501 gcaccatcat tcgcatcagc agcaacagca gcagctccat catcatcatc atcacaatca 4561 tcatttcgat gatgacgatg atgatgagaa atcatcaccg tccctggcca cagcggccat 4621 caaggtggaa ccgaatctct attcctccgg ctccggcgac aactctaacg atatgttcat 4681 caaagaggag gtgatgttcg aggattcggc cgccccacat tcaccacaat cgccgcccag 4741 ctcaaagttt cgcatctcga actttgatag cgatctggtc gatcatcatg tcgatttgaa 4801 tcactcgcta ccgccgtatg gtaacctgtt tgagccgcat tcgatacccg atagcatacc 4861 cgtgcaactc tatccggatg atgatgatga ctttcggctg gaccatagct cgctgggtgg 4921 actgcataat acatcgtcat cgacaacaga tggcgacttt atcaaaaagg aatgggtcta 4981 tggcactggc accagttcct atgccatgaa tggcaaattc gatgatgaca gcgatgccct 5041 atgcgatgct gctaatttca tatacaattg agagagtgtc gtcgtctcgc aattgtcggg 5101 caggccagag aggagcgaca ggaaaggaaa tagcaacagg atatggaaat ggaaatgcat 5161 acgcacattt tggcaagaca attgcttgga tatatatata tatatatatg tatatgtata 5221 tgatatatat ctctctctat ccctggtcac ctcttctgtg acacctttta aatgcaatca 5281 ataacaccca gcccaacaca ccaccacaca cacacaccaa caacatagat atacatgtat 5341 agattgatat atgtgtgtat gtatatgtgt atatatatat atacatgcca cacacacaca 5401 cacctctaga taatttgcta tctccgtgtt gcgctcgtga tgatcttaac gtgatcttaa 5461 gtctagatat gtgtagagtg tagaattttg atatactcta tctctctctc tctctttctg 5521 ttttaccttt ttttcgccta acccccccaa ccacccgaat ttcctgtgtg tcgccctact 5581 tctatgtgtg tcgtcatttt atttaatctc tctctgtctc tctctgttgt agttttttgt 5641 gcatattgac ctctcactct aagtcgctca ccatatatat ttccgtctcg ctctctctgt 5701 ctgtctttgc tgtcactgtc tcattctctg atgttttgag tatagagtac tccctcctcc 5761 cacgaagcct cacaaaagga aaaccactta cttgctcgtc ttcctcaatg atgtgtagtg 5821 taaacgagac ctgatcctcc cccctccccc tcacccaact ccttctccaa accagccatt 5881 ctgaaatctg ctaaaaacaa agaaacagga agaaaaattg tatgtaaaac aatcattttt 5941 attgttataa ggtatttttt atttatatat tgagaaatct ttctatatat gattagcgtc 6001 cagaacgcac gatatgcaag atatagtaat tatacatata ctatatagaa gctctatata 6061 taattttgta tacgatccaa tcctaagttt aattagtttt tgcatttgat ctctaacttc 6121 cacataaatt tggctttaat atttgcaacc caaaaacaaa agaattgtag ttcctgttta 6181 atggcaaaga aaactggagg aaatcgtata atgattttat atatacaaca tatagattat 6241 gcgcttaaat tgtacagata tatgtatctt gtatatgtgt atgtatgatg attatgagat 6301 ggcttgtggc tggccttctc tatatggaaa gatctctcat tctcgttgtg tcactactaa 6361 aaagattgtt cagtattttg atcccaaaaa gaaaagaaaa aaaaacaatc gaaactgaaa 6421 gcaaaatgat ctatatatag tacatatata taacgaatct gcacgcactc tgatatgctt 6481 taattttatt cgattcgatt ttgattattt gacttaccta aagcgcagta tttgttggtc 6541 cttttattcg agaatccatt aattttttat tttattttac agcacacaca cacatcctaa 6601 tatataaata tttagttttt agtgtaatta gatccttttt ttgtgttttt tttttctttg 6661 tataattttt ttaagaattc agtgctcgat ttgtgccgct gcttgtataa cagcgccgct 6721 accttataaa cctgttctaa tgtgcaatct ctcgcttgcc cccctacccc caaatcctac 6781 cctctacccg caaaccctac cctctacccg tctcacacga acccttaaat agttgctaag 6841 ttcttcagat tcacacaaat atttatatat atatatattc tcacatgtat gatttgcatt 6901 aaatatatat attatatatg tatgcgtaca gataaactgt agctaagcgt aagcccctac 6961 cctacccatt tgtgtgtagt ctcataacct gaaagagcat ggttttagcc ctagctttac 7021 cttaacacac gaaactgctt gtaaaaacat atttaacaca aaagaagaac acagacacac 7081 acaccacacc ctccatatat acatacatag atagatcttt agcgttaaca attttaattt 7141 gcatttacaa ctttttttgt ttgtttgtgt actcgtttgt atttttcctc cttcgtttgc 7201 agagagacaa acaattaaaa ataatttaag ataaaaagaa aagcaaacag gacgcaacac 7261 atgcatatat atatatatat atatttatat attgaacaat gtatgtggga tcggaagatg 7321 atgatgcaat aagaggagta cattaaacag aaacttctat caaaagcatt taatgttaac 7381 aaaaagaaaa aaaagaaaat tcataataaa tcgatataaa ttaaatacaa aaatatatat 7441 aaagtataca aatctaaaga aaaaattagc caacaatttt aaaatgtagc tgaagaattt 7501 taattttttt gtttgaaatt tgtgttggtt tttgcgtaga agatacaaat ttgtccccca 7561 atccccccat tcatttattt tgtgcatttt acgctgctgc ttttttgcgc atcatattaa 7621 cataaatgtt taatattggt aattgttgtt gcttgccatt ttgtttgtta ctaaaagaaa 7681 tatattacca agaacattaa gtacacacgc acacaaacat atgcacatac acatacgtgt 7741 ctatacgtac gtatagagaa aagctcaaag aaaaatgaaa aataatacgc gcaaaaagaa 7801 tacgttttac atttgaaacc taactttatg gatttgtctt ccgcacgcac gttcaaacag 7861 ttcttcgatt acgttcgaat gttgttcgat gtatgtacaa attgccaatc gtaatgatat 7921 cgatcaagcc gacgattgac gatatcaaac gatagccgct agctaaccca gccctcccct 7981 ccccctcgcc gtttacattg cattctttgc tggaagagtg cccagcaaga aatcagaacg 8041 agacaagtaa aagtggcagc aaaatgcctt caaaaatggt gagaactgcc ccctgcctaa 8101 gtcccgcaaa cccataagcc accaactcat ttgccgccag cattctgaat agaaaaataa 8161 aaccacagaa gaaggagtcc tccaagtccc ccccccccct cctgcccgta acaaatctca 8221 gttgaactaa tgaaacagaa gcaatttaaa attaaattaa ataaaagtta tacatttttg 8281 tacatttgaa aactgaaata gagttacaaa acaaaaag