PREDICTED: Drosophila obscura transcriptional regulator ovo
LOCUS XM_022354820 8318 bp mRNA linear INV 14-MAY-2021
(LOC111066313), transcript variant X2, mRNA.
ACCESSION XM_022354820
VERSION XM_022354820.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022354820.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..8318
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..8318
/gene="LOC111066313"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 6 Proteins, and 99% coverage of
the annotated genomic feature by RNAseq alignments,
including 11 samples with support for all annotated
introns"
/db_xref="GeneID:111066313"
CDS 821..5071
/gene="LOC111066313"
/codon_start=1
/product="transcriptional regulator ovo"
/protein_id="XP_022210512.2"
/db_xref="GeneID:111066313"
/translation="MNRNIRKSAGRRSRRTGRLRPLPLSPIPSHTHTLITQPPAAAAA
EAAPPPILIAGGLGDNTMASSATNAASISRSTSTNSSSITALPSLFSSASASAAAAAA
AATSKDMDGLIAINDSALSQQIEFILQDAPMEQDDDHQQHHHHHRHHHHHNHQHQHHQ
PQPQSQQQHHHQPQQQQQQQQQQHQQQHLQPHHQLVVGAGAGGGTAAKLLENNHPPTT
TTTAATATATNSASVSTYTTSSSSSSNSNTNSNNNHLEEHHHLMIQQQQQHLLNGRRV
IIQSTGNSSTATVLAASDIKEEELDEEEEDPELNDENLQDIEEEAQAAEADEEPETTA
QQHPHLQTRVKIEVEDDDMPEDDDDEEEDEDENMSVAHLQRQQQAQAQAQAQLEYQLQ
STQAVGAGAQQLVQLPAGSLMSTSSTRTMTVPVTEAALVQLQRRPVYISNAVGGLSAG
TTYVRMPGAAVISRSPMTVLNVVQQAAALPATQLILQAQSPTPQQQQQQQPQVDQQQQ
QQMAINQQQQQQTQSQSQHPPQQQQQQLQLSSHPVKHQQASPASSSSPCSSSGSSGAS
STGATASSSSSYQCMECVEKFESKELFDIHRSGHANNMKCAICNMVLKSLKNYEKHCL
RCKPYECQICGRVVRFRPNFIKHMRVHTGQQSERHKYKCEVCHKEFMSFEYFKVHKKI
HNENVNLTCEICGKVFSALASLRGHSKLHSGVKLHKCDVCGKGFGQRYNLKIHARTHT
GDFPFECKICKKKLHTQSSLQTHMQVHLRDQPTAVATQQAKASNASASGSASSQNVGS
TTNTNTNTTTTTTSTTHTSSISGGSNSSNSNSATSATATTIVKLEPPSDMDMPSTSTS
NSNQLQQQHHSHHHQQQQQQLQQQHHQQQQQQHHHQMELDDHSGLSGDEDVNSSSHIV
NSTTNRLTTGEDSSNESSNASLLNQPHSSSSAASISSSHSPSMLQQQVPPAASSQYLM
STPSRTIVIKNYMQQQQQHAPAGQGQHHQQNASDQGAVLHTQVIQSGAGTSNSSSNSS
SNGSGNAIVSNGAQQLIRKTPIIHHSTSGSGTLSSALASVVQQQHTGGVGVGSPAQSP
QSSSSTSCSSTTVLVSKATGVPLSIASSAAAAAALAGSTIIRSTRNHHHIQQQQQQQQ
QHSNSQSQQQQQRGSGAGTQQRNNHRNHHRRRHLADMDDDDDDDEDEDAATAAAQLQL
QRHGQHTSMSVSPHHHQQQQQQQHHHSHQQQQQQLHHHHHHNHHFDDDDDDEKSSPSL
ATAAIKVEPNLYSSGSGDNSNDMFIKEEVMFEDSAAPHSPQSPPSSKFRISNFDSDLV
DHHVDLNHSLPPYGNLFEPHSIPDSIPVQLYPDDDDDFRLDHSSLGGLHNTSSSTTDG
DFIKKEWVYGTGTSSYAMNGKFDDDSDALCDAANFIYN"
misc_feature 2636..2698
/gene="LOC111066313"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2711..2773
/gene="LOC111066313"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2807..2869
/gene="LOC111066313"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2891..2953
/gene="LOC111066313"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(2906..2908,2912..2914,2918..2920,2924..2929,
2936..2941,2948..2950,2990..2992,2996..2998,3008..3013,
3020..3025,3032..3034,3074..3076,3080..3082,3086..3088,
3092..3097,3104..3109,3116..3118)
/gene="LOC111066313"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 2969..>3145
/gene="LOC111066313"
/note="N-terminal domain of Oryza sativa transcription
factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
SUF4 (AtSUF4), and similar proteins; Region: SUF4-like;
cd20908"
/db_xref="CDD:411020"
misc_feature 2975..3040
/gene="LOC111066313"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:411020"
misc_feature 2975..3037
/gene="LOC111066313"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(2990..2992,3017..3019,3029..3031,3035..3037,
3056..3058,3077..3079)
/gene="LOC111066313"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:411020"
misc_feature 3059..3121
/gene="LOC111066313"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:411020"
misc_feature 3059..3121
/gene="LOC111066313"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
ORIGIN
1 cacacaaaca cacggctcgc acacggggga gcaatttttg ttattattga acagaaagaa
61 catcgcaaaa aaaaattaat aaaagacagc ttccgaagct gggtgcaaaa gcgtacggtt
121 ggttaaaaag tgtgaattgc tgcgaaaatt aattgcacaa aaaaagtgta atcgaaagga
181 aaggagaagc agcagcagca gaaggaagac acaacaataa aaacgagagg aaatcaataa
241 taataataac aataaggcag taaataacag aagaaagaac agcagaagtg ggagccgtag
301 cgcagcggcc ggacctgtgc ctgtgtgtgt gtgtgtgtgt gtgcgtgcgt gcgtgcgtgt
361 gcgtgcatat agcatgtagt attgttgtaa caaacaaaac gaaaggcggc caacaacaac
421 atacaacaag aaaacataat gaaagcaaat gagccaaatc aagcagcaga agcatcagca
481 gcagccgcgt ccaacgtcga cgacgacgta gcagccgccg atgccgccga cgcacgggaa
541 gcaccgaaaa ccgcatgaca aggaaatgga aaattttgtt gaaaattctt tggaaaagcg
601 aacgaacaac gcgaatcaaa aattaacaag aattcaaagt aaatcacaga aacagagcca
661 ctaaaaaaag aagaagcacc agccgggcgc cgcaccagta acaataaata aaagaagcag
721 cctaaataaa ctaaagacga agacgacgac aaagacgaag acgaggaaga agaataagaa
781 acagcagtag agcagaagca gagaagaaac aaagcagtgc atgaatagga atataagaaa
841 aagtgcagga agaagaagca ggagaaccgg caggttgcgc cccctccctc tctcacccat
901 accatctcac acacacactc ttatcaccca accaccagca gcagcagcag cagaagcagc
961 tccaccaccc attctcatag caggaggact gggggataat accatggcaa gcagtgcaac
1021 aaatgcagca agcatcagcc gcagcacaag cacaaacagt agcagtatca ctgcactgcc
1081 atcactattc tcatctgcat ccgcctccgc cgccgccgct gctgcagcag ccacctcaaa
1141 ggacatggac ggactgattg ccattaatga tagcgcatta tcgcaacaaa tcgaatttat
1201 actacaagat gctcccatgg agcaggatga tgaccatcaa cagcaccacc accaccaccg
1261 gcaccaccat caccacaacc atcagcatca acaccaccag ccgcagccac agtcgcagca
1321 gcagcaccac caccagccgc aacagcaaca gcagcagcag cagcaacagc atcaacaaca
1381 gcatctgcaa ccacatcatc agctggtagt aggagctggg gctggaggtg gaacagcggc
1441 caagctcctc gagaataacc acccaccgac aacaacaacc actgcagcaa ccgcaacggc
1501 aaccaacagt gcttccgttt ccacctacac cactagcagc agcagcagca gcaacagcaa
1561 caccaacagc aataacaatc acctggagga gcatcaccac ctgatgatcc aacagcagca
1621 acagcatctg cttaatggcc ggcgtgttat catccagtcg accggcaaca gcagcacggc
1681 cacagtactg gccgccagcg acatcaagga ggaggagctg gacgaggagg aggaggatcc
1741 cgagctgaac gatgagaatc tgcaggatat cgaggaggag gcccaggcgg ccgaagccga
1801 cgaggagcca gagacgaccg cacagcagca tccgcatctt cagactcgcg tcaagatcga
1861 ggtggaggac gacgatatgc ccgaagacga tgacgatgag gaagaggacg aagacgagaa
1921 catgtcggtg gcccatctcc agcggcagca acaggcacaa gcccaggccc aggcccaatt
1981 ggaatatcaa ctgcaatcga cgcaagcggt cggggcaggc gcccaacaat tggtgcagct
2041 gcccgccggc agtctaatga gcacctcgag tactcgcact atgactgtgc ccgtcaccga
2101 ggcggcactt gtccagctgc agcgccgtcc cgtgtatatc agcaatgctg tgggcggact
2161 gtccgccggc accacctatg tacgaatgcc aggagcggcc gtgatcagcc gcagtccgat
2221 gacggtgctg aatgtggtgc aacaggcggc ggctctaccc gccacccaat tgatcctgca
2281 ggcccagagc ccaacgccac aacaacagca gcaacagcag ccccaagtcg atcagcagca
2341 gcagcagcaa atggccatta accaacagca gcagcagcag acacaatcgc aatcacagca
2401 tccgccacag caacagcagc agcagctaca gctatcatcc catcccgtga agcaccaaca
2461 agcatcgcca gcatccagct cttccccatg cagcagtagc ggcagcagtg gagccagcag
2521 cacgggggcc accgccagct cgtcgagcag ctaccagtgt atggagtgtg tggagaaatt
2581 cgaatcgaag gagctgttcg acatccatcg cagcgggcat gccaacaaca tgaagtgcgc
2641 catctgcaac atggtgctca agtcgctcaa gaattacgag aagcattgcc tgcgatgcaa
2701 gccgtacgaa tgccagatct gcggccgggt ggtgcgcttc cggcccaact tcatcaagca
2761 tatgcgtgtg cacaccggcc agcagtcgga gcggcacaag tacaagtgcg aggtgtgcca
2821 caaggagttc atgagctttg aatacttcaa ggtgcacaag aagatccaca acgagaatgt
2881 caacctcacc tgcgagatct gtggcaaggt gttcagtgcc ctggcctcgc tgcgcggcca
2941 ctcgaaactc cattcgggtg tcaagctgca caagtgcgat gtctgcggca agggatttgg
3001 ccagcgctac aacctaaaga tccatgcccg cacccatacg ggcgacttcc catttgagtg
3061 caaaatatgc aagaagaagc tccacacaca atcctcgctg caaacgcaca tgcaggtcca
3121 tctcagggac cagccgacgg cagtggccac gcagcaggca aaggctagca atgccagtgc
3181 cagtggcagt gccagcagcc agaatgtggg gagcaccacc aatactaata ccaataccac
3241 caccaccacc acgagcacca cccacaccag cagcatcagc ggcggcagca actcgagcaa
3301 cagcaacagt gcgacaagcg ctacggccac aacgatcgtc aaactggagc cgccaagcga
3361 tatggatatg cccagcacta gcacaagcaa cagcaatcag ctgcaacagc agcaccactc
3421 tcaccaccac caacaacaac agcaacagct gcagcagcag catcatcagc agcagcagca
3481 gcagcaccac caccaaatgg aattggacga ccattctggc ctcagtgggg acgaggatgt
3541 gaactcttcc tcgcatattg tcaactcaac caccaatcgc ttgaccaccg gtgaggactc
3601 atccaatgag tcctcaaatg cctcgctact caatcagccg cactcctcct catccgcagc
3661 tagcatcagc tcctcgcatt caccatctat gctgcagcag caggtgccgc ctgcagcatc
3721 gtcgcagtat ctcatgtcca cgccctcacg gacgattgtc atcaagaact acatgcagca
3781 acagcagcaa catgcaccag cgggacaggg acagcatcat caacagaacg cttctgatca
3841 gggtgctgta ctccatacgc aggtcatcca aagcggtgca ggcaccagca acagcagcag
3901 caacagcagc agcaatggca gcgggaacgc catcgttagc aatggtgcac agcaattgat
3961 acgcaagacg cccatcattc atcactcaac gagtggcagt ggcacactga gctccgcttt
4021 ggccagcgtg gtgcagcaac aacatacagg aggagtggga gttggttcgc ccgctcaatc
4081 gccacagtca tcatcgtcaa cgtcttgctc ctccaccact gtgctggtgt caaaggccac
4141 gggtgtaccc ctatcgatag catcttcggc agcggcggcg gctgcgctgg ccggctcaac
4201 catcatacgg agcacacgca atcatcatca tatacagcaa cagcagcaac agcagcagca
4261 gcatagcaac agccagagtc agcagcaaca gcagcgtgga tcaggagctg gcacgcagca
4321 gcgcaataac caccgaaatc accaccgacg tcgtcatctt gcagacatgg acgatgatga
4381 cgatgacgac gaggatgaag acgcagccac agcagccgct caattgcagt tgcagcgcca
4441 tggccaacat acgtcaatgt ccgtcagccc ccaccaccac cagcaacagc agcagcagca
4501 gcaccatcat tcgcatcagc agcaacagca gcagctccat catcatcatc atcacaatca
4561 tcatttcgat gatgacgatg atgatgagaa atcatcaccg tccctggcca cagcggccat
4621 caaggtggaa ccgaatctct attcctccgg ctccggcgac aactctaacg atatgttcat
4681 caaagaggag gtgatgttcg aggattcggc cgccccacat tcaccacaat cgccgcccag
4741 ctcaaagttt cgcatctcga actttgatag cgatctggtc gatcatcatg tcgatttgaa
4801 tcactcgcta ccgccgtatg gtaacctgtt tgagccgcat tcgatacccg atagcatacc
4861 cgtgcaactc tatccggatg atgatgatga ctttcggctg gaccatagct cgctgggtgg
4921 actgcataat acatcgtcat cgacaacaga tggcgacttt atcaaaaagg aatgggtcta
4981 tggcactggc accagttcct atgccatgaa tggcaaattc gatgatgaca gcgatgccct
5041 atgcgatgct gctaatttca tatacaattg agagagtgtc gtcgtctcgc aattgtcggg
5101 caggccagag aggagcgaca ggaaaggaaa tagcaacagg atatggaaat ggaaatgcat
5161 acgcacattt tggcaagaca attgcttgga tatatatata tatatatatg tatatgtata
5221 tgatatatat ctctctctat ccctggtcac ctcttctgtg acacctttta aatgcaatca
5281 ataacaccca gcccaacaca ccaccacaca cacacaccaa caacatagat atacatgtat
5341 agattgatat atgtgtgtat gtatatgtgt atatatatat atacatgcca cacacacaca
5401 cacctctaga taatttgcta tctccgtgtt gcgctcgtga tgatcttaac gtgatcttaa
5461 gtctagatat gtgtagagtg tagaattttg atatactcta tctctctctc tctctttctg
5521 ttttaccttt ttttcgccta acccccccaa ccacccgaat ttcctgtgtg tcgccctact
5581 tctatgtgtg tcgtcatttt atttaatctc tctctgtctc tctctgttgt agttttttgt
5641 gcatattgac ctctcactct aagtcgctca ccatatatat ttccgtctcg ctctctctgt
5701 ctgtctttgc tgtcactgtc tcattctctg atgttttgag tatagagtac tccctcctcc
5761 cacgaagcct cacaaaagga aaaccactta cttgctcgtc ttcctcaatg atgtgtagtg
5821 taaacgagac ctgatcctcc cccctccccc tcacccaact ccttctccaa accagccatt
5881 ctgaaatctg ctaaaaacaa agaaacagga agaaaaattg tatgtaaaac aatcattttt
5941 attgttataa ggtatttttt atttatatat tgagaaatct ttctatatat gattagcgtc
6001 cagaacgcac gatatgcaag atatagtaat tatacatata ctatatagaa gctctatata
6061 taattttgta tacgatccaa tcctaagttt aattagtttt tgcatttgat ctctaacttc
6121 cacataaatt tggctttaat atttgcaacc caaaaacaaa agaattgtag ttcctgttta
6181 atggcaaaga aaactggagg aaatcgtata atgattttat atatacaaca tatagattat
6241 gcgcttaaat tgtacagata tatgtatctt gtatatgtgt atgtatgatg attatgagat
6301 ggcttgtggc tggccttctc tatatggaaa gatctctcat tctcgttgtg tcactactaa
6361 aaagattgtt cagtattttg atcccaaaaa gaaaagaaaa aaaaacaatc gaaactgaaa
6421 gcaaaatgat ctatatatag tacatatata taacgaatct gcacgcactc tgatatgctt
6481 taattttatt cgattcgatt ttgattattt gacttaccta aagcgcagta tttgttggtc
6541 cttttattcg agaatccatt aattttttat tttattttac agcacacaca cacatcctaa
6601 tatataaata tttagttttt agtgtaatta gatccttttt ttgtgttttt tttttctttg
6661 tataattttt ttaagaattc agtgctcgat ttgtgccgct gcttgtataa cagcgccgct
6721 accttataaa cctgttctaa tgtgcaatct ctcgcttgcc cccctacccc caaatcctac
6781 cctctacccg caaaccctac cctctacccg tctcacacga acccttaaat agttgctaag
6841 ttcttcagat tcacacaaat atttatatat atatatattc tcacatgtat gatttgcatt
6901 aaatatatat attatatatg tatgcgtaca gataaactgt agctaagcgt aagcccctac
6961 cctacccatt tgtgtgtagt ctcataacct gaaagagcat ggttttagcc ctagctttac
7021 cttaacacac gaaactgctt gtaaaaacat atttaacaca aaagaagaac acagacacac
7081 acaccacacc ctccatatat acatacatag atagatcttt agcgttaaca attttaattt
7141 gcatttacaa ctttttttgt ttgtttgtgt actcgtttgt atttttcctc cttcgtttgc
7201 agagagacaa acaattaaaa ataatttaag ataaaaagaa aagcaaacag gacgcaacac
7261 atgcatatat atatatatat atatttatat attgaacaat gtatgtggga tcggaagatg
7321 atgatgcaat aagaggagta cattaaacag aaacttctat caaaagcatt taatgttaac
7381 aaaaagaaaa aaaagaaaat tcataataaa tcgatataaa ttaaatacaa aaatatatat
7441 aaagtataca aatctaaaga aaaaattagc caacaatttt aaaatgtagc tgaagaattt
7501 taattttttt gtttgaaatt tgtgttggtt tttgcgtaga agatacaaat ttgtccccca
7561 atccccccat tcatttattt tgtgcatttt acgctgctgc ttttttgcgc atcatattaa
7621 cataaatgtt taatattggt aattgttgtt gcttgccatt ttgtttgtta ctaaaagaaa
7681 tatattacca agaacattaa gtacacacgc acacaaacat atgcacatac acatacgtgt
7741 ctatacgtac gtatagagaa aagctcaaag aaaaatgaaa aataatacgc gcaaaaagaa
7801 tacgttttac atttgaaacc taactttatg gatttgtctt ccgcacgcac gttcaaacag
7861 ttcttcgatt acgttcgaat gttgttcgat gtatgtacaa attgccaatc gtaatgatat
7921 cgatcaagcc gacgattgac gatatcaaac gatagccgct agctaaccca gccctcccct
7981 ccccctcgcc gtttacattg cattctttgc tggaagagtg cccagcaaga aatcagaacg
8041 agacaagtaa aagtggcagc aaaatgcctt caaaaatggt gagaactgcc ccctgcctaa
8101 gtcccgcaaa cccataagcc accaactcat ttgccgccag cattctgaat agaaaaataa
8161 aaccacagaa gaaggagtcc tccaagtccc ccccccccct cctgcccgta acaaatctca
8221 gttgaactaa tgaaacagaa gcaatttaaa attaaattaa ataaaagtta tacatttttg
8281 tacatttgaa aactgaaata gagttacaaa acaaaaag