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LOCUS XM_022354819 8381 bp mRNA linear INV 14-MAY-2021 (LOC111066313), transcript variant X1, mRNA. ACCESSION XM_022354819 VERSION XM_022354819.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022354819.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8381 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..8381 /gene="LOC111066313" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns" /db_xref="GeneID:111066313" CDS 884..5134 /gene="LOC111066313" /codon_start=1 /product="transcriptional regulator ovo" /protein_id="XP_022210511.2" /db_xref="GeneID:111066313" /translation="MNRNIRKSAGRRSRRTGRLRPLPLSPIPSHTHTLITQPPAAAAA EAAPPPILIAGGLGDNTMASSATNAASISRSTSTNSSSITALPSLFSSASASAAAAAA AATSKDMDGLIAINDSALSQQIEFILQDAPMEQDDDHQQHHHHHRHHHHHNHQHQHHQ PQPQSQQQHHHQPQQQQQQQQQQHQQQHLQPHHQLVVGAGAGGGTAAKLLENNHPPTT TTTAATATATNSASVSTYTTSSSSSSNSNTNSNNNHLEEHHHLMIQQQQQHLLNGRRV IIQSTGNSSTATVLAASDIKEEELDEEEEDPELNDENLQDIEEEAQAAEADEEPETTA QQHPHLQTRVKIEVEDDDMPEDDDDEEEDEDENMSVAHLQRQQQAQAQAQAQLEYQLQ STQAVGAGAQQLVQLPAGSLMSTSSTRTMTVPVTEAALVQLQRRPVYISNAVGGLSAG TTYVRMPGAAVISRSPMTVLNVVQQAAALPATQLILQAQSPTPQQQQQQQPQVDQQQQ QQMAINQQQQQQTQSQSQHPPQQQQQQLQLSSHPVKHQQASPASSSSPCSSSGSSGAS STGATASSSSSYQCMECVEKFESKELFDIHRSGHANNMKCAICNMVLKSLKNYEKHCL RCKPYECQICGRVVRFRPNFIKHMRVHTGQQSERHKYKCEVCHKEFMSFEYFKVHKKI HNENVNLTCEICGKVFSALASLRGHSKLHSGVKLHKCDVCGKGFGQRYNLKIHARTHT GDFPFECKICKKKLHTQSSLQTHMQVHLRDQPTAVATQQAKASNASASGSASSQNVGS TTNTNTNTTTTTTSTTHTSSISGGSNSSNSNSATSATATTIVKLEPPSDMDMPSTSTS NSNQLQQQHHSHHHQQQQQQLQQQHHQQQQQQHHHQMELDDHSGLSGDEDVNSSSHIV NSTTNRLTTGEDSSNESSNASLLNQPHSSSSAASISSSHSPSMLQQQVPPAASSQYLM STPSRTIVIKNYMQQQQQHAPAGQGQHHQQNASDQGAVLHTQVIQSGAGTSNSSSNSS SNGSGNAIVSNGAQQLIRKTPIIHHSTSGSGTLSSALASVVQQQHTGGVGVGSPAQSP QSSSSTSCSSTTVLVSKATGVPLSIASSAAAAAALAGSTIIRSTRNHHHIQQQQQQQQ QHSNSQSQQQQQRGSGAGTQQRNNHRNHHRRRHLADMDDDDDDDEDEDAATAAAQLQL QRHGQHTSMSVSPHHHQQQQQQQHHHSHQQQQQQLHHHHHHNHHFDDDDDDEKSSPSL ATAAIKVEPNLYSSGSGDNSNDMFIKEEVMFEDSAAPHSPQSPPSSKFRISNFDSDLV DHHVDLNHSLPPYGNLFEPHSIPDSIPVQLYPDDDDDFRLDHSSLGGLHNTSSSTTDG DFIKKEWVYGTGTSSYAMNGKFDDDSDALCDAANFIYN" misc_feature 2699..2761 /gene="LOC111066313" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2774..2836 /gene="LOC111066313" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2870..2932 /gene="LOC111066313" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2954..3016 /gene="LOC111066313" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(2969..2971,2975..2977,2981..2983,2987..2992, 2999..3004,3011..3013,3053..3055,3059..3061,3071..3076, 3083..3088,3095..3097,3137..3139,3143..3145,3149..3151, 3155..3160,3167..3172,3179..3181) /gene="LOC111066313" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 3032..>3208 /gene="LOC111066313" /note="N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins; Region: SUF4-like; cd20908" /db_xref="CDD:411020" misc_feature 3038..3103 /gene="LOC111066313" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:411020" misc_feature 3038..3100 /gene="LOC111066313" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(3053..3055,3080..3082,3092..3094,3098..3100, 3119..3121,3140..3142) /gene="LOC111066313" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:411020" misc_feature 3122..3184 /gene="LOC111066313" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:411020" misc_feature 3122..3184 /gene="LOC111066313" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" ORIGIN 1 aaataattat ttgaaaataa tataattaag gactgctgcc gctgcagcga atattgtgaa 61 aaccaatgtt ttggtcgcgc cgcgaagtgc atttttttct gaatcggaca aataataatt 121 cgtgaaaatt ttgcctgcat cttcgcacac tcagcccctc tcccgatccc ccggtcaaga 181 agcagaaaat caaatgtaat gtgatgttaa gttaattgca caaaaaaagt gtaatcgaaa 241 ggaaaggaga agcagcagca gcagaaggaa gacacaacaa taaaaacgag aggaaatcaa 301 taataataat aacaataagg cagtaaataa cagaagaaag aacagcagaa gtgggagccg 361 tagcgcagcg gccggacctg tgcctgtgtg tgtgtgtgtg tgtgtgcgtg cgtgcgtgcg 421 tgtgcgtgca tatagcatgt agtattgttg taacaaacaa aacgaaaggc ggccaacaac 481 aacatacaac aagaaaacat aatgaaagca aatgagccaa atcaagcagc agaagcatca 541 gcagcagccg cgtccaacgt cgacgacgac gtagcagccg ccgatgccgc cgacgcacgg 601 gaagcaccga aaaccgcatg acaaggaaat ggaaaatttt gttgaaaatt ctttggaaaa 661 gcgaacgaac aacgcgaatc aaaaattaac aagaattcaa agtaaatcac agaaacagag 721 ccactaaaaa aagaagaagc accagccggg cgccgcacca gtaacaataa ataaaagaag 781 cagcctaaat aaactaaaga cgaagacgac gacaaagacg aagacgagga agaagaataa 841 gaaacagcag tagagcagaa gcagagaaga aacaaagcag tgcatgaata ggaatataag 901 aaaaagtgca ggaagaagaa gcaggagaac cggcaggttg cgccccctcc ctctctcacc 961 cataccatct cacacacaca ctcttatcac ccaaccacca gcagcagcag cagcagaagc 1021 agctccacca cccattctca tagcaggagg actgggggat aataccatgg caagcagtgc 1081 aacaaatgca gcaagcatca gccgcagcac aagcacaaac agtagcagta tcactgcact 1141 gccatcacta ttctcatctg catccgcctc cgccgccgcc gctgctgcag cagccacctc 1201 aaaggacatg gacggactga ttgccattaa tgatagcgca ttatcgcaac aaatcgaatt 1261 tatactacaa gatgctccca tggagcagga tgatgaccat caacagcacc accaccacca 1321 ccggcaccac catcaccaca accatcagca tcaacaccac cagccgcagc cacagtcgca 1381 gcagcagcac caccaccagc cgcaacagca acagcagcag cagcagcaac agcatcaaca 1441 acagcatctg caaccacatc atcagctggt agtaggagct ggggctggag gtggaacagc 1501 ggccaagctc ctcgagaata accacccacc gacaacaaca accactgcag caaccgcaac 1561 ggcaaccaac agtgcttccg tttccaccta caccactagc agcagcagca gcagcaacag 1621 caacaccaac agcaataaca atcacctgga ggagcatcac cacctgatga tccaacagca 1681 gcaacagcat ctgcttaatg gccggcgtgt tatcatccag tcgaccggca acagcagcac 1741 ggccacagta ctggccgcca gcgacatcaa ggaggaggag ctggacgagg aggaggagga 1801 tcccgagctg aacgatgaga atctgcagga tatcgaggag gaggcccagg cggccgaagc 1861 cgacgaggag ccagagacga ccgcacagca gcatccgcat cttcagactc gcgtcaagat 1921 cgaggtggag gacgacgata tgcccgaaga cgatgacgat gaggaagagg acgaagacga 1981 gaacatgtcg gtggcccatc tccagcggca gcaacaggca caagcccagg cccaggccca 2041 attggaatat caactgcaat cgacgcaagc ggtcggggca ggcgcccaac aattggtgca 2101 gctgcccgcc ggcagtctaa tgagcacctc gagtactcgc actatgactg tgcccgtcac 2161 cgaggcggca cttgtccagc tgcagcgccg tcccgtgtat atcagcaatg ctgtgggcgg 2221 actgtccgcc ggcaccacct atgtacgaat gccaggagcg gccgtgatca gccgcagtcc 2281 gatgacggtg ctgaatgtgg tgcaacaggc ggcggctcta cccgccaccc aattgatcct 2341 gcaggcccag agcccaacgc cacaacaaca gcagcaacag cagccccaag tcgatcagca 2401 gcagcagcag caaatggcca ttaaccaaca gcagcagcag cagacacaat cgcaatcaca 2461 gcatccgcca cagcaacagc agcagcagct acagctatca tcccatcccg tgaagcacca 2521 acaagcatcg ccagcatcca gctcttcccc atgcagcagt agcggcagca gtggagccag 2581 cagcacgggg gccaccgcca gctcgtcgag cagctaccag tgtatggagt gtgtggagaa 2641 attcgaatcg aaggagctgt tcgacatcca tcgcagcggg catgccaaca acatgaagtg 2701 cgccatctgc aacatggtgc tcaagtcgct caagaattac gagaagcatt gcctgcgatg 2761 caagccgtac gaatgccaga tctgcggccg ggtggtgcgc ttccggccca acttcatcaa 2821 gcatatgcgt gtgcacaccg gccagcagtc ggagcggcac aagtacaagt gcgaggtgtg 2881 ccacaaggag ttcatgagct ttgaatactt caaggtgcac aagaagatcc acaacgagaa 2941 tgtcaacctc acctgcgaga tctgtggcaa ggtgttcagt gccctggcct cgctgcgcgg 3001 ccactcgaaa ctccattcgg gtgtcaagct gcacaagtgc gatgtctgcg gcaagggatt 3061 tggccagcgc tacaacctaa agatccatgc ccgcacccat acgggcgact tcccatttga 3121 gtgcaaaata tgcaagaaga agctccacac acaatcctcg ctgcaaacgc acatgcaggt 3181 ccatctcagg gaccagccga cggcagtggc cacgcagcag gcaaaggcta gcaatgccag 3241 tgccagtggc agtgccagca gccagaatgt ggggagcacc accaatacta ataccaatac 3301 caccaccacc accacgagca ccacccacac cagcagcatc agcggcggca gcaactcgag 3361 caacagcaac agtgcgacaa gcgctacggc cacaacgatc gtcaaactgg agccgccaag 3421 cgatatggat atgcccagca ctagcacaag caacagcaat cagctgcaac agcagcacca 3481 ctctcaccac caccaacaac aacagcaaca gctgcagcag cagcatcatc agcagcagca 3541 gcagcagcac caccaccaaa tggaattgga cgaccattct ggcctcagtg gggacgagga 3601 tgtgaactct tcctcgcata ttgtcaactc aaccaccaat cgcttgacca ccggtgagga 3661 ctcatccaat gagtcctcaa atgcctcgct actcaatcag ccgcactcct cctcatccgc 3721 agctagcatc agctcctcgc attcaccatc tatgctgcag cagcaggtgc cgcctgcagc 3781 atcgtcgcag tatctcatgt ccacgccctc acggacgatt gtcatcaaga actacatgca 3841 gcaacagcag caacatgcac cagcgggaca gggacagcat catcaacaga acgcttctga 3901 tcagggtgct gtactccata cgcaggtcat ccaaagcggt gcaggcacca gcaacagcag 3961 cagcaacagc agcagcaatg gcagcgggaa cgccatcgtt agcaatggtg cacagcaatt 4021 gatacgcaag acgcccatca ttcatcactc aacgagtggc agtggcacac tgagctccgc 4081 tttggccagc gtggtgcagc aacaacatac aggaggagtg ggagttggtt cgcccgctca 4141 atcgccacag tcatcatcgt caacgtcttg ctcctccacc actgtgctgg tgtcaaaggc 4201 cacgggtgta cccctatcga tagcatcttc ggcagcggcg gcggctgcgc tggccggctc 4261 aaccatcata cggagcacac gcaatcatca tcatatacag caacagcagc aacagcagca 4321 gcagcatagc aacagccaga gtcagcagca acagcagcgt ggatcaggag ctggcacgca 4381 gcagcgcaat aaccaccgaa atcaccaccg acgtcgtcat cttgcagaca tggacgatga 4441 tgacgatgac gacgaggatg aagacgcagc cacagcagcc gctcaattgc agttgcagcg 4501 ccatggccaa catacgtcaa tgtccgtcag cccccaccac caccagcaac agcagcagca 4561 gcagcaccat cattcgcatc agcagcaaca gcagcagctc catcatcatc atcatcacaa 4621 tcatcatttc gatgatgacg atgatgatga gaaatcatca ccgtccctgg ccacagcggc 4681 catcaaggtg gaaccgaatc tctattcctc cggctccggc gacaactcta acgatatgtt 4741 catcaaagag gaggtgatgt tcgaggattc ggccgcccca cattcaccac aatcgccgcc 4801 cagctcaaag tttcgcatct cgaactttga tagcgatctg gtcgatcatc atgtcgattt 4861 gaatcactcg ctaccgccgt atggtaacct gtttgagccg cattcgatac ccgatagcat 4921 acccgtgcaa ctctatccgg atgatgatga tgactttcgg ctggaccata gctcgctggg 4981 tggactgcat aatacatcgt catcgacaac agatggcgac tttatcaaaa aggaatgggt 5041 ctatggcact ggcaccagtt cctatgccat gaatggcaaa ttcgatgatg acagcgatgc 5101 cctatgcgat gctgctaatt tcatatacaa ttgagagagt gtcgtcgtct cgcaattgtc 5161 gggcaggcca gagaggagcg acaggaaagg aaatagcaac aggatatgga aatggaaatg 5221 catacgcaca ttttggcaag acaattgctt ggatatatat atatatatat atgtatatgt 5281 atatgatata tatctctctc tatccctggt cacctcttct gtgacacctt ttaaatgcaa 5341 tcaataacac ccagcccaac acaccaccac acacacacac caacaacata gatatacatg 5401 tatagattga tatatgtgtg tatgtatatg tgtatatata tatatacatg ccacacacac 5461 acacacctct agataatttg ctatctccgt gttgcgctcg tgatgatctt aacgtgatct 5521 taagtctaga tatgtgtaga gtgtagaatt ttgatatact ctatctctct ctctctcttt 5581 ctgttttacc tttttttcgc ctaacccccc caaccacccg aatttcctgt gtgtcgccct 5641 acttctatgt gtgtcgtcat tttatttaat ctctctctgt ctctctctgt tgtagttttt 5701 tgtgcatatt gacctctcac tctaagtcgc tcaccatata tatttccgtc tcgctctctc 5761 tgtctgtctt tgctgtcact gtctcattct ctgatgtttt gagtatagag tactccctcc 5821 tcccacgaag cctcacaaaa ggaaaaccac ttacttgctc gtcttcctca atgatgtgta 5881 gtgtaaacga gacctgatcc tcccccctcc ccctcaccca actccttctc caaaccagcc 5941 attctgaaat ctgctaaaaa caaagaaaca ggaagaaaaa ttgtatgtaa aacaatcatt 6001 tttattgtta taaggtattt tttatttata tattgagaaa tctttctata tatgattagc 6061 gtccagaacg cacgatatgc aagatatagt aattatacat atactatata gaagctctat 6121 atataatttt gtatacgatc caatcctaag tttaattagt ttttgcattt gatctctaac 6181 ttccacataa atttggcttt aatatttgca acccaaaaac aaaagaattg tagttcctgt 6241 ttaatggcaa agaaaactgg aggaaatcgt ataatgattt tatatataca acatatagat 6301 tatgcgctta aattgtacag atatatgtat cttgtatatg tgtatgtatg atgattatga 6361 gatggcttgt ggctggcctt ctctatatgg aaagatctct cattctcgtt gtgtcactac 6421 taaaaagatt gttcagtatt ttgatcccaa aaagaaaaga aaaaaaaaca atcgaaactg 6481 aaagcaaaat gatctatata tagtacatat atataacgaa tctgcacgca ctctgatatg 6541 ctttaatttt attcgattcg attttgatta tttgacttac ctaaagcgca gtatttgttg 6601 gtccttttat tcgagaatcc attaattttt tattttattt tacagcacac acacacatcc 6661 taatatataa atatttagtt tttagtgtaa ttagatcctt tttttgtgtt ttttttttct 6721 ttgtataatt tttttaagaa ttcagtgctc gatttgtgcc gctgcttgta taacagcgcc 6781 gctaccttat aaacctgttc taatgtgcaa tctctcgctt gcccccctac ccccaaatcc 6841 taccctctac ccgcaaaccc taccctctac ccgtctcaca cgaaccctta aatagttgct 6901 aagttcttca gattcacaca aatatttata tatatatata ttctcacatg tatgatttgc 6961 attaaatata tatattatat atgtatgcgt acagataaac tgtagctaag cgtaagcccc 7021 taccctaccc atttgtgtgt agtctcataa cctgaaagag catggtttta gccctagctt 7081 taccttaaca cacgaaactg cttgtaaaaa catatttaac acaaaagaag aacacagaca 7141 cacacaccac accctccata tatacataca tagatagatc tttagcgtta acaattttaa 7201 tttgcattta caactttttt tgtttgtttg tgtactcgtt tgtatttttc ctccttcgtt 7261 tgcagagaga caaacaatta aaaataattt aagataaaaa gaaaagcaaa caggacgcaa 7321 cacatgcata tatatatata tatatattta tatattgaac aatgtatgtg ggatcggaag 7381 atgatgatgc aataagagga gtacattaaa cagaaacttc tatcaaaagc atttaatgtt 7441 aacaaaaaga aaaaaaagaa aattcataat aaatcgatat aaattaaata caaaaatata 7501 tataaagtat acaaatctaa agaaaaaatt agccaacaat tttaaaatgt agctgaagaa 7561 ttttaatttt tttgtttgaa atttgtgttg gtttttgcgt agaagataca aatttgtccc 7621 ccaatccccc cattcattta ttttgtgcat tttacgctgc tgcttttttg cgcatcatat 7681 taacataaat gtttaatatt ggtaattgtt gttgcttgcc attttgtttg ttactaaaag 7741 aaatatatta ccaagaacat taagtacaca cgcacacaaa catatgcaca tacacatacg 7801 tgtctatacg tacgtataga gaaaagctca aagaaaaatg aaaaataata cgcgcaaaaa 7861 gaatacgttt tacatttgaa acctaacttt atggatttgt cttccgcacg cacgttcaaa 7921 cagttcttcg attacgttcg aatgttgttc gatgtatgta caaattgcca atcgtaatga 7981 tatcgatcaa gccgacgatt gacgatatca aacgatagcc gctagctaac ccagccctcc 8041 cctccccctc gccgtttaca ttgcattctt tgctggaaga gtgcccagca agaaatcaga 8101 acgagacaag taaaagtggc agcaaaatgc cttcaaaaat ggtgagaact gccccctgcc 8161 taagtcccgc aaacccataa gccaccaact catttgccgc cagcattctg aatagaaaaa 8221 taaaaccaca gaagaaggag tcctccaagt cccccccccc cctcctgccc gtaacaaatc 8281 tcagttgaac taatgaaaca gaagcaattt aaaattaaat taaataaaag ttatacattt 8341 ttgtacattt gaaaactgaa atagagttac aaaacaaaaa g