PREDICTED: Drosophila obscura transcriptional regulator ovo
LOCUS XM_022354819 8381 bp mRNA linear INV 14-MAY-2021
(LOC111066313), transcript variant X1, mRNA.
ACCESSION XM_022354819
VERSION XM_022354819.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022354819.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..8381
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..8381
/gene="LOC111066313"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 6 Proteins, and 99% coverage of
the annotated genomic feature by RNAseq alignments,
including 14 samples with support for all annotated
introns"
/db_xref="GeneID:111066313"
CDS 884..5134
/gene="LOC111066313"
/codon_start=1
/product="transcriptional regulator ovo"
/protein_id="XP_022210511.2"
/db_xref="GeneID:111066313"
/translation="MNRNIRKSAGRRSRRTGRLRPLPLSPIPSHTHTLITQPPAAAAA
EAAPPPILIAGGLGDNTMASSATNAASISRSTSTNSSSITALPSLFSSASASAAAAAA
AATSKDMDGLIAINDSALSQQIEFILQDAPMEQDDDHQQHHHHHRHHHHHNHQHQHHQ
PQPQSQQQHHHQPQQQQQQQQQQHQQQHLQPHHQLVVGAGAGGGTAAKLLENNHPPTT
TTTAATATATNSASVSTYTTSSSSSSNSNTNSNNNHLEEHHHLMIQQQQQHLLNGRRV
IIQSTGNSSTATVLAASDIKEEELDEEEEDPELNDENLQDIEEEAQAAEADEEPETTA
QQHPHLQTRVKIEVEDDDMPEDDDDEEEDEDENMSVAHLQRQQQAQAQAQAQLEYQLQ
STQAVGAGAQQLVQLPAGSLMSTSSTRTMTVPVTEAALVQLQRRPVYISNAVGGLSAG
TTYVRMPGAAVISRSPMTVLNVVQQAAALPATQLILQAQSPTPQQQQQQQPQVDQQQQ
QQMAINQQQQQQTQSQSQHPPQQQQQQLQLSSHPVKHQQASPASSSSPCSSSGSSGAS
STGATASSSSSYQCMECVEKFESKELFDIHRSGHANNMKCAICNMVLKSLKNYEKHCL
RCKPYECQICGRVVRFRPNFIKHMRVHTGQQSERHKYKCEVCHKEFMSFEYFKVHKKI
HNENVNLTCEICGKVFSALASLRGHSKLHSGVKLHKCDVCGKGFGQRYNLKIHARTHT
GDFPFECKICKKKLHTQSSLQTHMQVHLRDQPTAVATQQAKASNASASGSASSQNVGS
TTNTNTNTTTTTTSTTHTSSISGGSNSSNSNSATSATATTIVKLEPPSDMDMPSTSTS
NSNQLQQQHHSHHHQQQQQQLQQQHHQQQQQQHHHQMELDDHSGLSGDEDVNSSSHIV
NSTTNRLTTGEDSSNESSNASLLNQPHSSSSAASISSSHSPSMLQQQVPPAASSQYLM
STPSRTIVIKNYMQQQQQHAPAGQGQHHQQNASDQGAVLHTQVIQSGAGTSNSSSNSS
SNGSGNAIVSNGAQQLIRKTPIIHHSTSGSGTLSSALASVVQQQHTGGVGVGSPAQSP
QSSSSTSCSSTTVLVSKATGVPLSIASSAAAAAALAGSTIIRSTRNHHHIQQQQQQQQ
QHSNSQSQQQQQRGSGAGTQQRNNHRNHHRRRHLADMDDDDDDDEDEDAATAAAQLQL
QRHGQHTSMSVSPHHHQQQQQQQHHHSHQQQQQQLHHHHHHNHHFDDDDDDEKSSPSL
ATAAIKVEPNLYSSGSGDNSNDMFIKEEVMFEDSAAPHSPQSPPSSKFRISNFDSDLV
DHHVDLNHSLPPYGNLFEPHSIPDSIPVQLYPDDDDDFRLDHSSLGGLHNTSSSTTDG
DFIKKEWVYGTGTSSYAMNGKFDDDSDALCDAANFIYN"
misc_feature 2699..2761
/gene="LOC111066313"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2774..2836
/gene="LOC111066313"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2870..2932
/gene="LOC111066313"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2954..3016
/gene="LOC111066313"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(2969..2971,2975..2977,2981..2983,2987..2992,
2999..3004,3011..3013,3053..3055,3059..3061,3071..3076,
3083..3088,3095..3097,3137..3139,3143..3145,3149..3151,
3155..3160,3167..3172,3179..3181)
/gene="LOC111066313"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 3032..>3208
/gene="LOC111066313"
/note="N-terminal domain of Oryza sativa transcription
factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana
SUF4 (AtSUF4), and similar proteins; Region: SUF4-like;
cd20908"
/db_xref="CDD:411020"
misc_feature 3038..3103
/gene="LOC111066313"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:411020"
misc_feature 3038..3100
/gene="LOC111066313"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(3053..3055,3080..3082,3092..3094,3098..3100,
3119..3121,3140..3142)
/gene="LOC111066313"
/note="putative DNA binding site [nucleotide binding];
other site"
/db_xref="CDD:411020"
misc_feature 3122..3184
/gene="LOC111066313"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:411020"
misc_feature 3122..3184
/gene="LOC111066313"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
ORIGIN
1 aaataattat ttgaaaataa tataattaag gactgctgcc gctgcagcga atattgtgaa
61 aaccaatgtt ttggtcgcgc cgcgaagtgc atttttttct gaatcggaca aataataatt
121 cgtgaaaatt ttgcctgcat cttcgcacac tcagcccctc tcccgatccc ccggtcaaga
181 agcagaaaat caaatgtaat gtgatgttaa gttaattgca caaaaaaagt gtaatcgaaa
241 ggaaaggaga agcagcagca gcagaaggaa gacacaacaa taaaaacgag aggaaatcaa
301 taataataat aacaataagg cagtaaataa cagaagaaag aacagcagaa gtgggagccg
361 tagcgcagcg gccggacctg tgcctgtgtg tgtgtgtgtg tgtgtgcgtg cgtgcgtgcg
421 tgtgcgtgca tatagcatgt agtattgttg taacaaacaa aacgaaaggc ggccaacaac
481 aacatacaac aagaaaacat aatgaaagca aatgagccaa atcaagcagc agaagcatca
541 gcagcagccg cgtccaacgt cgacgacgac gtagcagccg ccgatgccgc cgacgcacgg
601 gaagcaccga aaaccgcatg acaaggaaat ggaaaatttt gttgaaaatt ctttggaaaa
661 gcgaacgaac aacgcgaatc aaaaattaac aagaattcaa agtaaatcac agaaacagag
721 ccactaaaaa aagaagaagc accagccggg cgccgcacca gtaacaataa ataaaagaag
781 cagcctaaat aaactaaaga cgaagacgac gacaaagacg aagacgagga agaagaataa
841 gaaacagcag tagagcagaa gcagagaaga aacaaagcag tgcatgaata ggaatataag
901 aaaaagtgca ggaagaagaa gcaggagaac cggcaggttg cgccccctcc ctctctcacc
961 cataccatct cacacacaca ctcttatcac ccaaccacca gcagcagcag cagcagaagc
1021 agctccacca cccattctca tagcaggagg actgggggat aataccatgg caagcagtgc
1081 aacaaatgca gcaagcatca gccgcagcac aagcacaaac agtagcagta tcactgcact
1141 gccatcacta ttctcatctg catccgcctc cgccgccgcc gctgctgcag cagccacctc
1201 aaaggacatg gacggactga ttgccattaa tgatagcgca ttatcgcaac aaatcgaatt
1261 tatactacaa gatgctccca tggagcagga tgatgaccat caacagcacc accaccacca
1321 ccggcaccac catcaccaca accatcagca tcaacaccac cagccgcagc cacagtcgca
1381 gcagcagcac caccaccagc cgcaacagca acagcagcag cagcagcaac agcatcaaca
1441 acagcatctg caaccacatc atcagctggt agtaggagct ggggctggag gtggaacagc
1501 ggccaagctc ctcgagaata accacccacc gacaacaaca accactgcag caaccgcaac
1561 ggcaaccaac agtgcttccg tttccaccta caccactagc agcagcagca gcagcaacag
1621 caacaccaac agcaataaca atcacctgga ggagcatcac cacctgatga tccaacagca
1681 gcaacagcat ctgcttaatg gccggcgtgt tatcatccag tcgaccggca acagcagcac
1741 ggccacagta ctggccgcca gcgacatcaa ggaggaggag ctggacgagg aggaggagga
1801 tcccgagctg aacgatgaga atctgcagga tatcgaggag gaggcccagg cggccgaagc
1861 cgacgaggag ccagagacga ccgcacagca gcatccgcat cttcagactc gcgtcaagat
1921 cgaggtggag gacgacgata tgcccgaaga cgatgacgat gaggaagagg acgaagacga
1981 gaacatgtcg gtggcccatc tccagcggca gcaacaggca caagcccagg cccaggccca
2041 attggaatat caactgcaat cgacgcaagc ggtcggggca ggcgcccaac aattggtgca
2101 gctgcccgcc ggcagtctaa tgagcacctc gagtactcgc actatgactg tgcccgtcac
2161 cgaggcggca cttgtccagc tgcagcgccg tcccgtgtat atcagcaatg ctgtgggcgg
2221 actgtccgcc ggcaccacct atgtacgaat gccaggagcg gccgtgatca gccgcagtcc
2281 gatgacggtg ctgaatgtgg tgcaacaggc ggcggctcta cccgccaccc aattgatcct
2341 gcaggcccag agcccaacgc cacaacaaca gcagcaacag cagccccaag tcgatcagca
2401 gcagcagcag caaatggcca ttaaccaaca gcagcagcag cagacacaat cgcaatcaca
2461 gcatccgcca cagcaacagc agcagcagct acagctatca tcccatcccg tgaagcacca
2521 acaagcatcg ccagcatcca gctcttcccc atgcagcagt agcggcagca gtggagccag
2581 cagcacgggg gccaccgcca gctcgtcgag cagctaccag tgtatggagt gtgtggagaa
2641 attcgaatcg aaggagctgt tcgacatcca tcgcagcggg catgccaaca acatgaagtg
2701 cgccatctgc aacatggtgc tcaagtcgct caagaattac gagaagcatt gcctgcgatg
2761 caagccgtac gaatgccaga tctgcggccg ggtggtgcgc ttccggccca acttcatcaa
2821 gcatatgcgt gtgcacaccg gccagcagtc ggagcggcac aagtacaagt gcgaggtgtg
2881 ccacaaggag ttcatgagct ttgaatactt caaggtgcac aagaagatcc acaacgagaa
2941 tgtcaacctc acctgcgaga tctgtggcaa ggtgttcagt gccctggcct cgctgcgcgg
3001 ccactcgaaa ctccattcgg gtgtcaagct gcacaagtgc gatgtctgcg gcaagggatt
3061 tggccagcgc tacaacctaa agatccatgc ccgcacccat acgggcgact tcccatttga
3121 gtgcaaaata tgcaagaaga agctccacac acaatcctcg ctgcaaacgc acatgcaggt
3181 ccatctcagg gaccagccga cggcagtggc cacgcagcag gcaaaggcta gcaatgccag
3241 tgccagtggc agtgccagca gccagaatgt ggggagcacc accaatacta ataccaatac
3301 caccaccacc accacgagca ccacccacac cagcagcatc agcggcggca gcaactcgag
3361 caacagcaac agtgcgacaa gcgctacggc cacaacgatc gtcaaactgg agccgccaag
3421 cgatatggat atgcccagca ctagcacaag caacagcaat cagctgcaac agcagcacca
3481 ctctcaccac caccaacaac aacagcaaca gctgcagcag cagcatcatc agcagcagca
3541 gcagcagcac caccaccaaa tggaattgga cgaccattct ggcctcagtg gggacgagga
3601 tgtgaactct tcctcgcata ttgtcaactc aaccaccaat cgcttgacca ccggtgagga
3661 ctcatccaat gagtcctcaa atgcctcgct actcaatcag ccgcactcct cctcatccgc
3721 agctagcatc agctcctcgc attcaccatc tatgctgcag cagcaggtgc cgcctgcagc
3781 atcgtcgcag tatctcatgt ccacgccctc acggacgatt gtcatcaaga actacatgca
3841 gcaacagcag caacatgcac cagcgggaca gggacagcat catcaacaga acgcttctga
3901 tcagggtgct gtactccata cgcaggtcat ccaaagcggt gcaggcacca gcaacagcag
3961 cagcaacagc agcagcaatg gcagcgggaa cgccatcgtt agcaatggtg cacagcaatt
4021 gatacgcaag acgcccatca ttcatcactc aacgagtggc agtggcacac tgagctccgc
4081 tttggccagc gtggtgcagc aacaacatac aggaggagtg ggagttggtt cgcccgctca
4141 atcgccacag tcatcatcgt caacgtcttg ctcctccacc actgtgctgg tgtcaaaggc
4201 cacgggtgta cccctatcga tagcatcttc ggcagcggcg gcggctgcgc tggccggctc
4261 aaccatcata cggagcacac gcaatcatca tcatatacag caacagcagc aacagcagca
4321 gcagcatagc aacagccaga gtcagcagca acagcagcgt ggatcaggag ctggcacgca
4381 gcagcgcaat aaccaccgaa atcaccaccg acgtcgtcat cttgcagaca tggacgatga
4441 tgacgatgac gacgaggatg aagacgcagc cacagcagcc gctcaattgc agttgcagcg
4501 ccatggccaa catacgtcaa tgtccgtcag cccccaccac caccagcaac agcagcagca
4561 gcagcaccat cattcgcatc agcagcaaca gcagcagctc catcatcatc atcatcacaa
4621 tcatcatttc gatgatgacg atgatgatga gaaatcatca ccgtccctgg ccacagcggc
4681 catcaaggtg gaaccgaatc tctattcctc cggctccggc gacaactcta acgatatgtt
4741 catcaaagag gaggtgatgt tcgaggattc ggccgcccca cattcaccac aatcgccgcc
4801 cagctcaaag tttcgcatct cgaactttga tagcgatctg gtcgatcatc atgtcgattt
4861 gaatcactcg ctaccgccgt atggtaacct gtttgagccg cattcgatac ccgatagcat
4921 acccgtgcaa ctctatccgg atgatgatga tgactttcgg ctggaccata gctcgctggg
4981 tggactgcat aatacatcgt catcgacaac agatggcgac tttatcaaaa aggaatgggt
5041 ctatggcact ggcaccagtt cctatgccat gaatggcaaa ttcgatgatg acagcgatgc
5101 cctatgcgat gctgctaatt tcatatacaa ttgagagagt gtcgtcgtct cgcaattgtc
5161 gggcaggcca gagaggagcg acaggaaagg aaatagcaac aggatatgga aatggaaatg
5221 catacgcaca ttttggcaag acaattgctt ggatatatat atatatatat atgtatatgt
5281 atatgatata tatctctctc tatccctggt cacctcttct gtgacacctt ttaaatgcaa
5341 tcaataacac ccagcccaac acaccaccac acacacacac caacaacata gatatacatg
5401 tatagattga tatatgtgtg tatgtatatg tgtatatata tatatacatg ccacacacac
5461 acacacctct agataatttg ctatctccgt gttgcgctcg tgatgatctt aacgtgatct
5521 taagtctaga tatgtgtaga gtgtagaatt ttgatatact ctatctctct ctctctcttt
5581 ctgttttacc tttttttcgc ctaacccccc caaccacccg aatttcctgt gtgtcgccct
5641 acttctatgt gtgtcgtcat tttatttaat ctctctctgt ctctctctgt tgtagttttt
5701 tgtgcatatt gacctctcac tctaagtcgc tcaccatata tatttccgtc tcgctctctc
5761 tgtctgtctt tgctgtcact gtctcattct ctgatgtttt gagtatagag tactccctcc
5821 tcccacgaag cctcacaaaa ggaaaaccac ttacttgctc gtcttcctca atgatgtgta
5881 gtgtaaacga gacctgatcc tcccccctcc ccctcaccca actccttctc caaaccagcc
5941 attctgaaat ctgctaaaaa caaagaaaca ggaagaaaaa ttgtatgtaa aacaatcatt
6001 tttattgtta taaggtattt tttatttata tattgagaaa tctttctata tatgattagc
6061 gtccagaacg cacgatatgc aagatatagt aattatacat atactatata gaagctctat
6121 atataatttt gtatacgatc caatcctaag tttaattagt ttttgcattt gatctctaac
6181 ttccacataa atttggcttt aatatttgca acccaaaaac aaaagaattg tagttcctgt
6241 ttaatggcaa agaaaactgg aggaaatcgt ataatgattt tatatataca acatatagat
6301 tatgcgctta aattgtacag atatatgtat cttgtatatg tgtatgtatg atgattatga
6361 gatggcttgt ggctggcctt ctctatatgg aaagatctct cattctcgtt gtgtcactac
6421 taaaaagatt gttcagtatt ttgatcccaa aaagaaaaga aaaaaaaaca atcgaaactg
6481 aaagcaaaat gatctatata tagtacatat atataacgaa tctgcacgca ctctgatatg
6541 ctttaatttt attcgattcg attttgatta tttgacttac ctaaagcgca gtatttgttg
6601 gtccttttat tcgagaatcc attaattttt tattttattt tacagcacac acacacatcc
6661 taatatataa atatttagtt tttagtgtaa ttagatcctt tttttgtgtt ttttttttct
6721 ttgtataatt tttttaagaa ttcagtgctc gatttgtgcc gctgcttgta taacagcgcc
6781 gctaccttat aaacctgttc taatgtgcaa tctctcgctt gcccccctac ccccaaatcc
6841 taccctctac ccgcaaaccc taccctctac ccgtctcaca cgaaccctta aatagttgct
6901 aagttcttca gattcacaca aatatttata tatatatata ttctcacatg tatgatttgc
6961 attaaatata tatattatat atgtatgcgt acagataaac tgtagctaag cgtaagcccc
7021 taccctaccc atttgtgtgt agtctcataa cctgaaagag catggtttta gccctagctt
7081 taccttaaca cacgaaactg cttgtaaaaa catatttaac acaaaagaag aacacagaca
7141 cacacaccac accctccata tatacataca tagatagatc tttagcgtta acaattttaa
7201 tttgcattta caactttttt tgtttgtttg tgtactcgtt tgtatttttc ctccttcgtt
7261 tgcagagaga caaacaatta aaaataattt aagataaaaa gaaaagcaaa caggacgcaa
7321 cacatgcata tatatatata tatatattta tatattgaac aatgtatgtg ggatcggaag
7381 atgatgatgc aataagagga gtacattaaa cagaaacttc tatcaaaagc atttaatgtt
7441 aacaaaaaga aaaaaaagaa aattcataat aaatcgatat aaattaaata caaaaatata
7501 tataaagtat acaaatctaa agaaaaaatt agccaacaat tttaaaatgt agctgaagaa
7561 ttttaatttt tttgtttgaa atttgtgttg gtttttgcgt agaagataca aatttgtccc
7621 ccaatccccc cattcattta ttttgtgcat tttacgctgc tgcttttttg cgcatcatat
7681 taacataaat gtttaatatt ggtaattgtt gttgcttgcc attttgtttg ttactaaaag
7741 aaatatatta ccaagaacat taagtacaca cgcacacaaa catatgcaca tacacatacg
7801 tgtctatacg tacgtataga gaaaagctca aagaaaaatg aaaaataata cgcgcaaaaa
7861 gaatacgttt tacatttgaa acctaacttt atggatttgt cttccgcacg cacgttcaaa
7921 cagttcttcg attacgttcg aatgttgttc gatgtatgta caaattgcca atcgtaatga
7981 tatcgatcaa gccgacgatt gacgatatca aacgatagcc gctagctaac ccagccctcc
8041 cctccccctc gccgtttaca ttgcattctt tgctggaaga gtgcccagca agaaatcaga
8101 acgagacaag taaaagtggc agcaaaatgc cttcaaaaat ggtgagaact gccccctgcc
8161 taagtcccgc aaacccataa gccaccaact catttgccgc cagcattctg aatagaaaaa
8221 taaaaccaca gaagaaggag tcctccaagt cccccccccc cctcctgccc gtaacaaatc
8281 tcagttgaac taatgaaaca gaagcaattt aaaattaaat taaataaaag ttatacattt
8341 ttgtacattt gaaaactgaa atagagttac aaaacaaaaa g