PREDICTED: Drosophila obscura transcriptional regulator ovo
LOCUS XM_022354818 5140 bp mRNA linear INV 14-MAY-2021
(LOC111066312), mRNA.
ACCESSION XM_022354818
VERSION XM_022354818.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022354818.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..5140
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..5140
/gene="LOC111066312"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 10 Proteins, and 99% coverage of
the annotated genomic feature by RNAseq alignments,
including 16 samples with support for all annotated
introns"
/db_xref="GeneID:111066312"
CDS 500..4795
/gene="LOC111066312"
/codon_start=1
/product="transcriptional regulator ovo"
/protein_id="XP_022210510.2"
/db_xref="GeneID:111066312"
/translation="MPKIFLIKNRLHQQQQRLLESQNLLQHKSQDDDRCLVPPLSPHG
SGTPHSPSPSPSPAHPHPEPQGQCQTSSPFQQQDDQLPLSLTRKRFHHRRHYFGQSRH
SLLIDHGLNLNPNLNQNQNQNQNSTELDVDHNAAAASEVQNEKLGCLRPAELLQRLSC
TTTNQTTTSSSIATTTPTPTPTPTPTPPALATKDCDENSPIKTATTTTKTTASSSSIP
KQPTPQSTAAERSSSSSSSEVDVDVEEEPDRKAHKEDEQLKCPSVVLAEEEEEEEEED
GDVDVGIEAPRPRFYNTGIVLTQAQRKEYPKEHQQQEQPQPILVRARKEKEHDSDVDS
DTDSDDGCKLIVDEKPLLPVDKPLSLRMRSTPPPAEERPSPPPPREPTPAVRCSVIQR
APQTTAAAVATAGHAASPHHHYQNQHQHPEHQTPQRSVLLPLSAHDLDQLGPEQQEPI
DYHVPKRQSPSYDSDEELNARRLERARQVREARRRNTILAARVLLAQSQRLNPRLVRS
LPGILAAAAGHGRSSSSSGAAGQGFQSSGFGSGSSSSGSGSGQNASGGAGSPGGGFGG
ALGGSGAGGGGMGGGRDGRGNYGPNSPPTGALPPFYESLKSGQQSTASNNTGGSQTSA
GHGAGSHAAFNGNPNFLSIQNAAAAAYIMSAGAGVGGGGGGVGGGGGYINCGSNGAGG
GGGNGNANGNSNGGGGGGTVGGGGAASSAGIDGNNLLNFASGLASNPNYNESNSKFHN
PNSTMGHPFYGGNPSAYGIILKDEPDIEYDEAKIDIGTFAQNIIQATMGSSGQFNASA
YEDAIMSDLASSQCPNGTVDPLQFTATLMLSSQTDHLLEQLSDAVDLSSFLQRSCVDD
EGSTSPRQDFELGSTPSLTPDSVSVTPVEHHHHHHHSNHQSASTASQLDALHENLLTQ
LTHNMTRNGVNSQQQQQQQQQQHVQQQQQHLQQQQQHVQQQHVQQHVQHVQQPPPSYQ
HATRGLQMMQQQQQSQHSSYQQQSALMSQQQQQQLLSQQQQQSHHSHHQQQQQHHAAA
YQQHNLYAAQQQQPHHQQQQQHHSHHQFQQQQQQSHHSHHLHHHDNSNMSLPSPTAAA
AAAAAAAAAAVHLARPMSSSSSSGTNSSSSNSSMDANAAAAAAAALLDTKPLIQSLGL
PPDLQLEFVNGGHGIKNPLAVENAHGGHHRIRNIDCIDDLSKHGHHSQQQQQQQSSPQ
QQQQQTLQQQQQQQQQHQQQQSLQQQHQQQQQHQHHSSASSNASSHGSADALCMGGSG
SASQAGDDSGVNGKFVCRVCMKTFSLQRLLNRHMKCHSDIKRYLCTFCGKGFNDTFDL
KRHTRTHTGVRPYKCNLCEKSFTQRCSLESHCQKVHSVQHQYAYKERRAKMYVCEECG
HTTCEPEVHYLHLKDLHPFSPALLKFYDKRHFKFTNSQFANNLLGQLPMPVHN"
misc_feature 4334..4396
/gene="LOC111066312"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(4349..4351,4355..4357,4361..4363,4367..4372,
4379..4384,4391..4393,4433..4435,4439..4441,4451..4456,
4463..4468,4475..4477,4517..4519,4523..4525,4529..4531,
4535..4540,4547..4552,4562..4564)
/gene="LOC111066312"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 4373..4444
/gene="LOC111066312"
/note="Zinc-finger double domain; Region: zf-H2C2_2;
pfam13465"
/db_xref="CDD:463886"
misc_feature 4418..4480
/gene="LOC111066312"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 4454..4531
/gene="LOC111066312"
/note="Zinc-finger double domain; Region: zf-H2C2_2;
pfam13465"
/db_xref="CDD:463886"
misc_feature 4502..4567
/gene="LOC111066312"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
ORIGIN
1 aaaactaaaa cttacgaaat ttttttcaag ttaatttttt gcaagtgctt ctgacgaaaa
61 aaacaagaaa aacaaacaaa caaaaacacc aaaaaaaaaa aaaaaacacc ttcaccagag
121 aagcagagaa caacatggat tatttataat gaagaagccc aagcaaaggt tgacttgagc
181 ttcagctcag gatacaaaca acaacaaaaa atacaaaaat atctcaaaaa ttgtatcaca
241 tttttttttt tcgtttgttt ttttgttgcg ctatttgtgc acaacacagt gggcggggca
301 aggatcaaac atacacacac aattggatta gtgttttgtt tattcgggaa ccctttgaag
361 accacctccc cactcgaccc cactggcgcg tttcgtcgcg tcacgcgttc cgttgcgtcg
421 ttcgtgttta atcgctcgtt tatcggtcgc cgatcgttaa tcgtgtatcc gttaatcgcc
481 aatcgccgcc accaccacca tgccgaagat cttcctgatt aagaaccgcc tgcatcagca
541 gcaacagcgt ctgctcgaat cacagaacct gctgcagcac aagagccagg acgatgaccg
601 atgcctggtg ccaccgctca gcccacatgg ctctggcaca ccgcactcgc cctcgccatc
661 gccatcgccc gcccatcccc atccagagcc gcagggtcag tgtcaaacgt catcgccatt
721 ccagcagcag gatgaccaac tgccgctgag tctgacgcgt aaacgcttcc accatcgccg
781 tcactacttc ggacagtcgc gtcacagtct cctcatagac catggactca atctcaatcc
841 caatctcaat caaaatcaaa atcaaaatca aaactctacg gaattggatg tcgatcacaa
901 tgcagcagca gcaagcgagg ttcaaaatga aaaattaggt tgcttgaggc cggcagaatt
961 gttgcagcgc ctaagctgca ccaccaccaa ccaaaccacc accagcagca gcatagccac
1021 aaccacaccc acacctacgc ccacaccaac acccacgccc cccgcattag ccacaaaaga
1081 ctgcgacgag aattctccaa taaaaacagc aacaacaaca actaaaacaa cagcaagcag
1141 cagcagcata ccaaagcagc cgacgccgca gtcgacagcg gcagagagga gcagcagcag
1201 tagcagcagc gaagtagatg tagatgtaga agaagagcca gataggaaag cgcacaaaga
1261 agatgagcaa ttaaagtgcc catcagtagt gttggccgaa gaagaagagg aggaggagga
1321 ggaagacggc gacgttgacg tcggaattga ggctccccgc ccgcgcttct acaacacggg
1381 catcgtcctc acccaggccc aacgaaagga gtaccccaag gaacaccagc agcaggagca
1441 accgcagccg atcctcgtca gagccagaaa agaaaaggaa cacgactcgg atgtggactc
1501 cgacacagac tccgatgacg gttgcaagtt gattgtggat gagaagcctc tgctgcccgt
1561 tgacaagccg ctgtcgctgc gtatgcgcag caccccgccc ccggcagagg agcgtcccag
1621 tccaccgccc ccaagggaac cgacgcccgc tgtccgctgc agcgtaatcc agcgcgcacc
1681 acagaccact gcagcagcag tagctacagc aggacacgct gcctccccgc atcaccatta
1741 tcagaatcag catcagcatc cggagcatca gacgccccaa aggagcgttc tattgcccct
1801 cagtgcccac gatctcgacc aactgggacc ggagcagcag gagcccattg attatcacgt
1861 gccgaagcgg caaagcccca gctacgacag cgacgaggag ctgaacgccc gccgcctaga
1921 gagagcgcga caggtgcgcg aggcccgcag gcgaaacacg atattggcag cccgcgtact
1981 gctggcccag tcgcagcgcc ttaatccgcg cctggtgcgt agcctgcccg gcattttggc
2041 tgcagccgcc ggtcacggcc gtagcagcag cagctctggt gcagccggac agggctttca
2101 gtcgtcgggc tttggcagcg gcagcagctc gtccggctcg ggcagcggac agaacgccag
2161 cggtggtgcc ggttcgccgg gaggtggctt tgggggtgcc ctaggcggca gcggagctgg
2221 aggcggtggc atgggcggtg gccgagacgg acgaggcaac tacggtccca actctccccc
2281 caccggggcc ctgccaccat tctacgagag cctgaagagt ggccaacaga gcacggccag
2341 caataatacg ggcggcagtc agacatccgc tggacacgga gcaggctccc acgcagcctt
2401 caacggcaat cccaactttc tttccattca aaacgctgcc gcggcggcgt acatcatgtc
2461 agcgggagca ggagtcgggg gaggtggagg aggagtaggc ggaggtggtg gctacatcaa
2521 ttgcggatca aacggagcag gaggaggagg tggtaatggc aatgccaatg gaaattcaaa
2581 tggaggtgga ggtggaggta cggttggcgg tggtggagca gcatcatcgg ctggtatcga
2641 tggtaataac cttttgaact tcgcgagtgg cctggccagt aatcctaact ataacgaatc
2701 caattccaaa ttccataatc caaactcaac gatgggtcat cctttttacg gtggcaatcc
2761 ttcagcgtac ggcatcatac tcaaggacga gccggacatc gagtacgacg aggcaaagat
2821 cgatataggc acctttgcgc agaacatcat ccaggcgaca atgggcagct ccgggcagtt
2881 caatgccagc gcctacgagg acgccatcat gtcggatctc gccagttcgc agtgccccaa
2941 cggcactgtg gatccactgc agtttacggc cacgctgatg ctcagctccc agacggacca
3001 tctgctggag cagctctcgg atgccgtcga tctgagctcg ttcctgcagc gaagctgtgt
3061 ggacgacgag ggctccacca gtccgcggca ggactttgag ctcggttcga cgccctccct
3121 gacgcccgac tcggtgtcgg tgacgcccgt ggagcatcac catcatcatc accacagcaa
3181 ccatcagagt gcgagcacag catcccagtt ggatgccctg cacgagaatc tgctcacaca
3241 gttgacccac aatatgacac gcaatggcgt taactcccag cagcagcagc aacagcaaca
3301 gcagcagcat gtgcaacagc agcagcagca cctgcagcag cagcaacagc acgtgcagca
3361 acaacatgtc cagcagcacg tgcaacatgt gcagcagccg ccgccttcgt accagcatgc
3421 caccagaggc ctgcagatga tgcaacaaca gcagcagtcg cagcacagca gctaccagca
3481 gcagtcggct ttaatgtcac agcagcagca gcaacagttg ctcagccagc agcagcaaca
3541 gtcgcaccac tcgcaccacc agcagcagca gcagcatcat gccgccgcct accagcagca
3601 caatctgtat gctgcccaac agcagcagcc acaccaccag cagcaacagc agcatcactc
3661 gcaccaccaa ttccaacagc aacagcagca gtctcaccac tcgcaccatt tgcaccacca
3721 cgacaacagc aacatgtcgc tgccatcgcc cacggccgct gctgccgctg cggctgctgc
3781 tgctgcagca gccgtacatt tggcgcgtcc catgagcagc agcagcagct ccggtacgaa
3841 cagcagcagc agcaacagca gcatggatgc aaatgcagcg gcagcggctg ccgccgccct
3901 gctcgacacg aagccactca ttcaaagctt gggcctgccg ccggatctac agctggagtt
3961 tgtgaatggc gggcatggca tcaagaatcc actggctgtg gagaatgccc atggtggcca
4021 tcaccggata cgcaacatcg attgcattga tgatctcagc aagcacggcc accactccca
4081 gcagcaacag cagcagcaat catcccccca gcagcagcag cagcagacgc tccagcaaca
4141 acaacaacaa cagcagcaac atcagcagca gcaatccctc cagcagcaac atcagcagca
4201 gcagcagcac cagcatcata gcagtgccag cagcaatgcc agtagccatg gctccgctga
4261 tgccctctgc atgggtggat ccggatcggc cagccaggcc ggtgatgatt ctggggtcaa
4321 tggcaagttc gtttgccgcg tttgcatgaa aacgttctcg ctgcagaggc tgctcaatcg
4381 gcatatgaag tgccactcgg acatcaagcg gtacctgtgc acgttctgtg gcaagggatt
4441 caacgatacc ttcgatctga agcggcacac gcgcacccac acgggcgtcc ggccgtacaa
4501 gtgcaatctg tgcgagaaga gcttcacaca gcgctgctcg ctcgagtcac actgccagaa
4561 ggtgcacagt gtccagcatc agtatgcgta taaagagcgt cgcgccaaga tgtacgtatg
4621 cgaggagtgc ggccacacga cctgcgagcc agaggtgcac tatctgcatc tgaaggattt
4681 gcatccattc tcgccggcgc ttctcaagtt ctacgataag cggcatttca agtttaccaa
4741 ttcgcagttt gccaacaatc tgctcggaca gctgccaatg cctgtccaca attgagttgt
4801 ggattgtcag tagttagatc ctaagatcct cccccaccat gtgactttga agttttctga
4861 aaactgcccc catgccccac cagaacacca gccccatacc taccgcccat tgctatagct
4921 atcggagcgt agaagggatg gtagatcttt ggagattata aattgcacta cacaattttt
4981 gtatattctt ttgcgtagat ttagatttag atttagtcga tagtcgatga tgaatcccaa
5041 caacactttg ctgtgcaaaa aatcgctctc actttttaac actcttaaac atttgtttaa
5101 caattttcgt ttttagttaa tgatggaatt ccacctttcg