PREDICTED: Drosophila obscura cytospin-A (LOC111066261), mRNA.
LOCUS XM_022354718 4649 bp mRNA linear INV 14-MAY-2021
ACCESSION XM_022354718
VERSION XM_022354718.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq; corrected model.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022354718.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
##RefSeq-Attributes-START##
frameshifts :: corrected 1 indel
##RefSeq-Attributes-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-35 JAECWW010000165.1 3076700-3076734
36-1567 JAECWW010000165.1 3078813-3080344
1568-1708 JAECWW010000165.1 3080421-3080561
1709-1885 JAECWW010000165.1 3081227-3081403
1886-2242 JAECWW010000165.1 3081483-3081839
2243-3164 JAECWW010000165.1 3081841-3082762
3165-3313 JAECWW010000165.1 3082828-3082976
3314-3433 JAECWW010000165.1 3083051-3083170
3434-3716 JAECWW010000165.1 3083238-3083520
3717-3991 JAECWW010000165.1 3083588-3083862
3992-4649 JAECWW010000165.1 3083944-3084601
FEATURES Location/Qualifiers
source 1..4649
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..4649
/gene="LOC111066261"
/note="The sequence of the model RefSeq transcript was
modified relative to its source genomic sequence to
represent the inferred CDS: deleted 1 base in 1 codon;
Derived by automated computational analysis using gene
prediction method: Gnomon. Supporting evidence includes
similarity to: 5 Proteins, and 99% coverage of the
annotated genomic feature by RNAseq alignments, including
13 samples with support for all annotated introns"
/db_xref="GeneID:111066261"
CDS 593..4081
/gene="LOC111066261"
/note="The sequence of the model RefSeq protein was
modified relative to its source genomic sequence to
represent the inferred CDS: deleted 1 base in 1 codon"
/codon_start=1
/product="LOW QUALITY PROTEIN: cytospin-A"
/protein_id="XP_022210410.2"
/db_xref="GeneID:111066261"
/translation="MIKLKSLFRRGQGTSSSNSSNSSHKQQQQNSNSNNNRQKSQSST
SLNTAHEQQQQQQQQQQQQQQQQLNNAATAATASGTATTKFYSNHEAATYERGVDVGD
DEALLLTNQQQQQRLQQQLQQQQQQQQQQQQQQSHTLPLKKSKLKGQKQPKQLPILQQ
QQQLLQQQQQQQQLQLQQQQQQQQAALRNANVQPEQQQQQQLMTSIAAVPPAAATNNS
SSTSSSGNNNNINNNNALAALQDGGAAAAAAADFYQQLAAAATAASATSASAGGSNNS
VGNSTSASAFPAAAAAVAVAAAAASSYQKQQQQQQPLFNNEQQQQQLLEANNKMQELQ
RQLDRLGSEQLQLETRITELLPYQSEVVKLKGDLVKMQNLQEKTQMEIGNLKYENESL
RNRLRDVVNSPLSDAEKHQIIQDSQRLHSSAPASIALPSTNEAHDGTPCLTPDWDKQS
SSSEISVACLQDKIIQMEETHYSTNEELQATLQELADLQTQLSDTQTENERLAEEKDV
LFQSLCRQTEKLNESRTQISTLQELLLRDTKQAAEVCTSEREKKLLDLIQTSQEEREA
VLLKQEELNGELAELRQNRDAAQQEQQRQRERIALLDSQLDAATAERKQGEAQFSQAK
EEISQRAIEISRLSTLLENARSKIEELEADLARGDKTDLSDVLDAARREKDALEERLA
ELQDQWSRSQAELRRLREQLAGLTEECKVAKNNAKCAVSHLEYRLEQLQRDKDKLAGD
CQALEERVAELQVQSKCHHEDKAQLQTLLGETQRHLGDVKLKLSDTEQRLDKETQLRR
REAEEWQQFQADLLMTVRVANDFKTEALSAREQLVLDNKTQKEKIRLLEQQLEKLTTK
QLPQPPSETPQSLLSTVQLEMATRRSKLSFSRQDSRLSVKTLIESIENNKAQGKSDEA
ESNYSSNSSLNSGTPELGNTPIILAASGDWHESLRLPVLQSSNLHVNVGTTTAAAAAA
ADAATGGAGGVGSANSTKATMPLREQQQQQQHVTAANSSQPSTPATPSSSGSSQPPSL
PFGSVSKSFISGERKDPLNMLAKNGGSKRNALLKWCQNKTVGYRNIDITNFSSSWNDG
LAFCAILHSYLPDRIPYDQLSQANKRRNFSLAFAAAESVGIGTTLNINDMCQLERPDW
MQVMSYVTAIYKYFET"
misc_feature <1679..3337
/gene="LOC111066261"
/note="Synaptonemal complex protein 1 (SCP-1); Region:
SCP-1; pfam05483"
/db_xref="CDD:114219"
misc_feature <2021..>2848
/gene="LOC111066261"
/note="Chromosome segregation ATPase Smc [Cell cycle
control, cell division, chromosome partitioning]; Region:
Smc; COG1196"
/db_xref="CDD:440809"
misc_feature 3740..4075
/gene="LOC111066261"
/note="calponin homology (CH) domain found in the cytospin
family; Region: CH_CYTS; cd21199"
/db_xref="CDD:409048"
misc_feature order(3764..3766,3776..3778,3926..3928,3932..3937,
3944..3949,3953..3955,3977..4003,4025..4027,4031..4036,
4040..4045,4052..4057,4064..4066)
/gene="LOC111066261"
/note="putative actin binding site [polypeptide binding];
other site"
/db_xref="CDD:409048"
ORIGIN
1 aaaaaacaga aaccgaaaac gcgcgtcgct ttgttggcaa aaggcaacga atgcagtgcg
61 actcatgtgg caaatatgca ttgataaata atagtaattg ttagaacgat accaataaac
121 aacgataacc gacaactaat agctataaag ataacgataa acgacgacca tttcgaaaaa
181 aaatagtgcc acgatatata aaacgaaaga gctccaggaa aatcaaaaaa atcacccgcc
241 acatttgggc agattcaaca tcaactcgga tccgaaactg gagcttaaga tccaacaagt
301 gctggtgttc aaaatcaatt aggcaattca atcacgatcc acaatcaata aaactgcagc
361 tcaatatctg aaattgttag atttttatat aaataatgat atagccagtg gagcttaaga
421 attaatttca aaccacaaaa agatcttaca tgttaaataa agcccaaata tcactgacaa
481 tacagaagtg tatctccaag gttccaaagt ttatggttta cgttttgcta catatacaca
541 atatccacca aattggcaat acaattttca tcgaccaacg agaatcacaa aaatgattaa
601 gctgaaatca ttgtttcgca gaggacaagg gacctcgagt tccaactcct cgaactcctc
661 gcacaagcaa cagcagcaga actccaactc caacaataat cgccagaagt cacagtcgag
721 tacatcccta aacacggccc acgaacaaca acaacaacag cagcagcaac aacagcagca
781 gcagcagcag caactcaata acgcggcaac agctgcaaca gcgagtggca cagcgacaac
841 aaagttttat tccaatcacg aggcagccac atacgaacgg ggcgtggatg tgggcgatga
901 tgaggcgctg ctgctgacga atcaacaaca acaacagcga cttcaacaac aattgcaaca
961 gcagcagcag caacagcaac agcagcaaca acaacagagc cacacgctgc cgctgaaaaa
1021 gtcaaagcta aaaggacaaa agcaaccaaa gcagctgcca atattacaac aacagcaaca
1081 gcttctgcaa caacaacagc agcaacaaca actgcaactc cagcaacaac agcaacagca
1141 acaagcagcg ctccgcaatg cgaatgtaca accagaacaa caacaacaac aacaactaat
1201 gacttccatt gcggccgtgc ctccagcagc ggcaaccaac aacagtagca gcaccagcag
1261 cagcggcaac aacaacaaca ttaacaacaa caacgcattg gccgcgttgc aagatggtgg
1321 cgctgctgcc gccgccgcag ctgatttcta tcaacaacta gcagcagcag ccactgcagc
1381 atcggcaaca tcagccagtg ccggtggcag caacaacagt gtcggcaata gtacgtcggc
1441 aagcgcattt ccggccgcag cagccgccgt ggccgtggca gccgctgcag ccagcagcta
1501 tcagaaacag cagcaacagc agcagccact gttcaacaac gaacagcaac aacagcagct
1561 cttggaggct aacaacaaaa tgcaggagct gcagaggcag ctggatcgac tgggaagcga
1621 gcaactgcag ttggagacac gcatcacaga gctgctgcca taccaaagcg aggtggtcaa
1681 actgaagggc gatctggtta agatgcagaa tctacaggag aaaacacaaa tggaaatcgg
1741 caatctgaaa tatgaaaatg aatctttgcg caatcgcttg cgggacgttg tcaactcgcc
1801 attgtcggat gcggagaagc atcagattat acaagattcg cagcgtttgc atagctcagc
1861 gcccgcctcc atagcactgc ccagtacaaa cgaagcgcac gatgggacgc cctgcctcac
1921 gcccgactgg gacaagcagt cgtcgtccag cgaaatatca gtagcctgct tgcaggacaa
1981 gatcatccag atggaggaga cccactactc gaccaatgag gagctgcagg ccaccctcca
2041 ggagctggcc gacctgcaaa cgcagctcag cgacacccaa acggagaacg aacggctcgc
2101 cgaggagaag gatgtgctct tccagtcgct ctgccgccag acggaaaagc tgaacgagtc
2161 ccgaacgcag atcagcaccc ttcaggagct gctgctgcgc gacaccaagc aggcggctga
2221 ggtgtgcaca tcggagcgcg agaaaaagct gctggatctc atccagacgt cgcaggagga
2281 gcgggaggcg gtgctgctca agcaggagga gctcaacggg gagctggccg agctgcgaca
2341 gaaccgcgat gccgcacagc aggagcagca gcggcagcgg gagcgcatcg ccttgcttga
2401 ctcgcagctg gacgcggcca cggcggagcg taagcagggc gaggcacagt tctcgcaggc
2461 caaggaggag atctcgcagc gggccattga gatcagcagg ctgagcacgc tgctcgagaa
2521 tgcccgctcc aagatcgagg aactggaggc ggatttggcg cgtggcgaca agaccgatct
2581 cagcgacgta ctggacgcag cccgacggga gaaggatgcc ctggaggagc ggctggccga
2641 gctgcaggat cagtggtcgc gcagccaggc ggagttgcgt cgcctgcggg agcagctggc
2701 cggactgacc gaggagtgca aggtggccaa gaacaatgcc aagtgcgccg tctcccatct
2761 ggagtatcgg ctggaacagc tgcagcgcga caaggacaag ctggccggtg actgtcaggc
2821 gctggaggag cgggtggccg agctgcaggt gcagtccaag tgccaccacg aggacaaggc
2881 ccagctgcag acgctgctcg gcgaaacgca gaggcacctg ggcgacgtga agctgaagct
2941 gagcgacacc gagcagcggc tggacaagga gacgcagctg cggcgacgag aggctgagga
3001 atggcaacag ttccaggcgg atctgctgat gaccgtgcgt gttgcaaacg acttcaagac
3061 tgaggcgcta agcgctcgcg agcagctcgt gctcgacaac aagacgcaaa aggagaaaat
3121 ccggctgctg gagcagcagc tggagaagct caccaccaag cagctaccgc agccgccgtc
3181 ggagacgcca cagtcgttgc tgtccacggt ccagctggag atggcaacgc gtcgcagtaa
3241 acttagcttt agccggcagg actccaggct gtccgtcaag accctcatag agagcatcga
3301 gaataacaag gcgcaaggca aatcggatga agcggagtca aactacagct ccaattcgag
3361 cctgaacagc ggcacgcccg agctggggaa cactcccatc attctggccg cctccggtga
3421 ttggcacgag agccttcgtt tgccagtcct gcagagcagc aatctgcacg taaatgtagg
3481 aacaacgact gcggcagcag cagcagcagc tgacgctgca actggaggag ccggaggagt
3541 aggatcagct aactctacca aagccacaat gccgttgcgg gagcagcagc aacagcagca
3601 gcatgtgacg gctgccaact cctcgcagcc ctccacaccg gccacgccca gcagcagcgg
3661 cagcagccag ccgcccagtc tgccctttgg cagtgtctca aagtccttca ttagcggcga
3721 gcgcaaggat ccgctaaata tgctggccaa gaacggtggc tccaagagga atgcactgct
3781 caagtggtgc cagaacaaga cagtgggcta ccgcaacatt gacatcacga acttcagctc
3841 atcgtggaac gatggcctgg ccttctgcgc gatccttcac tcttatctgc cggatcgcat
3901 accctacgat cagctcagtc aggcaaacaa gcggcgaaac ttttcgcttg cttttgccgc
3961 cgccgaatcg gtgggaattg gcaccacact caacatcaac gatatgtgcc agcttgagcg
4021 gcccgattgg atgcaggtga tgtcctatgt gacggcgatc tacaaatact ttgagaccta
4081 gatggatgcc gtctctcgtc taccgtctac cgtcttttgt gtatatttat aatcagcatt
4141 tcctcaatgt tttgcgttca gacgaatccc tctgacctct gacacgacaa gaagaaaata
4201 ttttaacttt agcccctcct ccccacgccc ttagtgtata tgtatgtgtt ttttgttttt
4261 gttttttttt ttctctcttc agactttcat tttgtatgtc tatatgtcta tgtctacacc
4321 atttatcgat gttagtggac aggtggttga aaaatcttga cttatttgaa tgaatgaatg
4381 aatgaaacgg agcagcaggc aacaggcaac agagcatgaa aaacaattgt ttattaaata
4441 ttaagtaatc tgtaaaatgc atttgtttgt tttttcggtt ttacagatga acgctagagc
4501 cccctagata ttgtagaact tagtttaaag atactcgtat gtttaaaaag cagcttcgag
4561 gttggttttt tttttgttgt ataagagagt gcccccctgt atgccgagtg tccactgtat
4621 tttctctctc tgtgtgtatg tatgttttt