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LOCUS XM_022354718 4649 bp mRNA linear INV 14-MAY-2021 ACCESSION XM_022354718 VERSION XM_022354718.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq; corrected model. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022354718.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-35 JAECWW010000165.1 3076700-3076734 36-1567 JAECWW010000165.1 3078813-3080344 1568-1708 JAECWW010000165.1 3080421-3080561 1709-1885 JAECWW010000165.1 3081227-3081403 1886-2242 JAECWW010000165.1 3081483-3081839 2243-3164 JAECWW010000165.1 3081841-3082762 3165-3313 JAECWW010000165.1 3082828-3082976 3314-3433 JAECWW010000165.1 3083051-3083170 3434-3716 JAECWW010000165.1 3083238-3083520 3717-3991 JAECWW010000165.1 3083588-3083862 3992-4649 JAECWW010000165.1 3083944-3084601 FEATURES Location/Qualifiers source 1..4649 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..4649 /gene="LOC111066261" /note="The sequence of the model RefSeq transcript was modified relative to its source genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns" /db_xref="GeneID:111066261" CDS 593..4081 /gene="LOC111066261" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon" /codon_start=1 /product="LOW QUALITY PROTEIN: cytospin-A" /protein_id="XP_022210410.2" /db_xref="GeneID:111066261" /translation="MIKLKSLFRRGQGTSSSNSSNSSHKQQQQNSNSNNNRQKSQSST SLNTAHEQQQQQQQQQQQQQQQQLNNAATAATASGTATTKFYSNHEAATYERGVDVGD DEALLLTNQQQQQRLQQQLQQQQQQQQQQQQQQSHTLPLKKSKLKGQKQPKQLPILQQ QQQLLQQQQQQQQLQLQQQQQQQQAALRNANVQPEQQQQQQLMTSIAAVPPAAATNNS SSTSSSGNNNNINNNNALAALQDGGAAAAAAADFYQQLAAAATAASATSASAGGSNNS VGNSTSASAFPAAAAAVAVAAAAASSYQKQQQQQQPLFNNEQQQQQLLEANNKMQELQ RQLDRLGSEQLQLETRITELLPYQSEVVKLKGDLVKMQNLQEKTQMEIGNLKYENESL RNRLRDVVNSPLSDAEKHQIIQDSQRLHSSAPASIALPSTNEAHDGTPCLTPDWDKQS SSSEISVACLQDKIIQMEETHYSTNEELQATLQELADLQTQLSDTQTENERLAEEKDV LFQSLCRQTEKLNESRTQISTLQELLLRDTKQAAEVCTSEREKKLLDLIQTSQEEREA VLLKQEELNGELAELRQNRDAAQQEQQRQRERIALLDSQLDAATAERKQGEAQFSQAK EEISQRAIEISRLSTLLENARSKIEELEADLARGDKTDLSDVLDAARREKDALEERLA ELQDQWSRSQAELRRLREQLAGLTEECKVAKNNAKCAVSHLEYRLEQLQRDKDKLAGD CQALEERVAELQVQSKCHHEDKAQLQTLLGETQRHLGDVKLKLSDTEQRLDKETQLRR REAEEWQQFQADLLMTVRVANDFKTEALSAREQLVLDNKTQKEKIRLLEQQLEKLTTK QLPQPPSETPQSLLSTVQLEMATRRSKLSFSRQDSRLSVKTLIESIENNKAQGKSDEA ESNYSSNSSLNSGTPELGNTPIILAASGDWHESLRLPVLQSSNLHVNVGTTTAAAAAA ADAATGGAGGVGSANSTKATMPLREQQQQQQHVTAANSSQPSTPATPSSSGSSQPPSL PFGSVSKSFISGERKDPLNMLAKNGGSKRNALLKWCQNKTVGYRNIDITNFSSSWNDG LAFCAILHSYLPDRIPYDQLSQANKRRNFSLAFAAAESVGIGTTLNINDMCQLERPDW MQVMSYVTAIYKYFET" misc_feature <1679..3337 /gene="LOC111066261" /note="Synaptonemal complex protein 1 (SCP-1); Region: SCP-1; pfam05483" /db_xref="CDD:114219" misc_feature <2021..>2848 /gene="LOC111066261" /note="Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; Region: Smc; COG1196" /db_xref="CDD:440809" misc_feature 3740..4075 /gene="LOC111066261" /note="calponin homology (CH) domain found in the cytospin family; Region: CH_CYTS; cd21199" /db_xref="CDD:409048" misc_feature order(3764..3766,3776..3778,3926..3928,3932..3937, 3944..3949,3953..3955,3977..4003,4025..4027,4031..4036, 4040..4045,4052..4057,4064..4066) /gene="LOC111066261" /note="putative actin binding site [polypeptide binding]; other site" /db_xref="CDD:409048" ORIGIN 1 aaaaaacaga aaccgaaaac gcgcgtcgct ttgttggcaa aaggcaacga atgcagtgcg 61 actcatgtgg caaatatgca ttgataaata atagtaattg ttagaacgat accaataaac 121 aacgataacc gacaactaat agctataaag ataacgataa acgacgacca tttcgaaaaa 181 aaatagtgcc acgatatata aaacgaaaga gctccaggaa aatcaaaaaa atcacccgcc 241 acatttgggc agattcaaca tcaactcgga tccgaaactg gagcttaaga tccaacaagt 301 gctggtgttc aaaatcaatt aggcaattca atcacgatcc acaatcaata aaactgcagc 361 tcaatatctg aaattgttag atttttatat aaataatgat atagccagtg gagcttaaga 421 attaatttca aaccacaaaa agatcttaca tgttaaataa agcccaaata tcactgacaa 481 tacagaagtg tatctccaag gttccaaagt ttatggttta cgttttgcta catatacaca 541 atatccacca aattggcaat acaattttca tcgaccaacg agaatcacaa aaatgattaa 601 gctgaaatca ttgtttcgca gaggacaagg gacctcgagt tccaactcct cgaactcctc 661 gcacaagcaa cagcagcaga actccaactc caacaataat cgccagaagt cacagtcgag 721 tacatcccta aacacggccc acgaacaaca acaacaacag cagcagcaac aacagcagca 781 gcagcagcag caactcaata acgcggcaac agctgcaaca gcgagtggca cagcgacaac 841 aaagttttat tccaatcacg aggcagccac atacgaacgg ggcgtggatg tgggcgatga 901 tgaggcgctg ctgctgacga atcaacaaca acaacagcga cttcaacaac aattgcaaca 961 gcagcagcag caacagcaac agcagcaaca acaacagagc cacacgctgc cgctgaaaaa 1021 gtcaaagcta aaaggacaaa agcaaccaaa gcagctgcca atattacaac aacagcaaca 1081 gcttctgcaa caacaacagc agcaacaaca actgcaactc cagcaacaac agcaacagca 1141 acaagcagcg ctccgcaatg cgaatgtaca accagaacaa caacaacaac aacaactaat 1201 gacttccatt gcggccgtgc ctccagcagc ggcaaccaac aacagtagca gcaccagcag 1261 cagcggcaac aacaacaaca ttaacaacaa caacgcattg gccgcgttgc aagatggtgg 1321 cgctgctgcc gccgccgcag ctgatttcta tcaacaacta gcagcagcag ccactgcagc 1381 atcggcaaca tcagccagtg ccggtggcag caacaacagt gtcggcaata gtacgtcggc 1441 aagcgcattt ccggccgcag cagccgccgt ggccgtggca gccgctgcag ccagcagcta 1501 tcagaaacag cagcaacagc agcagccact gttcaacaac gaacagcaac aacagcagct 1561 cttggaggct aacaacaaaa tgcaggagct gcagaggcag ctggatcgac tgggaagcga 1621 gcaactgcag ttggagacac gcatcacaga gctgctgcca taccaaagcg aggtggtcaa 1681 actgaagggc gatctggtta agatgcagaa tctacaggag aaaacacaaa tggaaatcgg 1741 caatctgaaa tatgaaaatg aatctttgcg caatcgcttg cgggacgttg tcaactcgcc 1801 attgtcggat gcggagaagc atcagattat acaagattcg cagcgtttgc atagctcagc 1861 gcccgcctcc atagcactgc ccagtacaaa cgaagcgcac gatgggacgc cctgcctcac 1921 gcccgactgg gacaagcagt cgtcgtccag cgaaatatca gtagcctgct tgcaggacaa 1981 gatcatccag atggaggaga cccactactc gaccaatgag gagctgcagg ccaccctcca 2041 ggagctggcc gacctgcaaa cgcagctcag cgacacccaa acggagaacg aacggctcgc 2101 cgaggagaag gatgtgctct tccagtcgct ctgccgccag acggaaaagc tgaacgagtc 2161 ccgaacgcag atcagcaccc ttcaggagct gctgctgcgc gacaccaagc aggcggctga 2221 ggtgtgcaca tcggagcgcg agaaaaagct gctggatctc atccagacgt cgcaggagga 2281 gcgggaggcg gtgctgctca agcaggagga gctcaacggg gagctggccg agctgcgaca 2341 gaaccgcgat gccgcacagc aggagcagca gcggcagcgg gagcgcatcg ccttgcttga 2401 ctcgcagctg gacgcggcca cggcggagcg taagcagggc gaggcacagt tctcgcaggc 2461 caaggaggag atctcgcagc gggccattga gatcagcagg ctgagcacgc tgctcgagaa 2521 tgcccgctcc aagatcgagg aactggaggc ggatttggcg cgtggcgaca agaccgatct 2581 cagcgacgta ctggacgcag cccgacggga gaaggatgcc ctggaggagc ggctggccga 2641 gctgcaggat cagtggtcgc gcagccaggc ggagttgcgt cgcctgcggg agcagctggc 2701 cggactgacc gaggagtgca aggtggccaa gaacaatgcc aagtgcgccg tctcccatct 2761 ggagtatcgg ctggaacagc tgcagcgcga caaggacaag ctggccggtg actgtcaggc 2821 gctggaggag cgggtggccg agctgcaggt gcagtccaag tgccaccacg aggacaaggc 2881 ccagctgcag acgctgctcg gcgaaacgca gaggcacctg ggcgacgtga agctgaagct 2941 gagcgacacc gagcagcggc tggacaagga gacgcagctg cggcgacgag aggctgagga 3001 atggcaacag ttccaggcgg atctgctgat gaccgtgcgt gttgcaaacg acttcaagac 3061 tgaggcgcta agcgctcgcg agcagctcgt gctcgacaac aagacgcaaa aggagaaaat 3121 ccggctgctg gagcagcagc tggagaagct caccaccaag cagctaccgc agccgccgtc 3181 ggagacgcca cagtcgttgc tgtccacggt ccagctggag atggcaacgc gtcgcagtaa 3241 acttagcttt agccggcagg actccaggct gtccgtcaag accctcatag agagcatcga 3301 gaataacaag gcgcaaggca aatcggatga agcggagtca aactacagct ccaattcgag 3361 cctgaacagc ggcacgcccg agctggggaa cactcccatc attctggccg cctccggtga 3421 ttggcacgag agccttcgtt tgccagtcct gcagagcagc aatctgcacg taaatgtagg 3481 aacaacgact gcggcagcag cagcagcagc tgacgctgca actggaggag ccggaggagt 3541 aggatcagct aactctacca aagccacaat gccgttgcgg gagcagcagc aacagcagca 3601 gcatgtgacg gctgccaact cctcgcagcc ctccacaccg gccacgccca gcagcagcgg 3661 cagcagccag ccgcccagtc tgccctttgg cagtgtctca aagtccttca ttagcggcga 3721 gcgcaaggat ccgctaaata tgctggccaa gaacggtggc tccaagagga atgcactgct 3781 caagtggtgc cagaacaaga cagtgggcta ccgcaacatt gacatcacga acttcagctc 3841 atcgtggaac gatggcctgg ccttctgcgc gatccttcac tcttatctgc cggatcgcat 3901 accctacgat cagctcagtc aggcaaacaa gcggcgaaac ttttcgcttg cttttgccgc 3961 cgccgaatcg gtgggaattg gcaccacact caacatcaac gatatgtgcc agcttgagcg 4021 gcccgattgg atgcaggtga tgtcctatgt gacggcgatc tacaaatact ttgagaccta 4081 gatggatgcc gtctctcgtc taccgtctac cgtcttttgt gtatatttat aatcagcatt 4141 tcctcaatgt tttgcgttca gacgaatccc tctgacctct gacacgacaa gaagaaaata 4201 ttttaacttt agcccctcct ccccacgccc ttagtgtata tgtatgtgtt ttttgttttt 4261 gttttttttt ttctctcttc agactttcat tttgtatgtc tatatgtcta tgtctacacc 4321 atttatcgat gttagtggac aggtggttga aaaatcttga cttatttgaa tgaatgaatg 4381 aatgaaacgg agcagcaggc aacaggcaac agagcatgaa aaacaattgt ttattaaata 4441 ttaagtaatc tgtaaaatgc atttgtttgt tttttcggtt ttacagatga acgctagagc 4501 cccctagata ttgtagaact tagtttaaag atactcgtat gtttaaaaag cagcttcgag 4561 gttggttttt tttttgttgt ataagagagt gcccccctgt atgccgagtg tccactgtat 4621 tttctctctc tgtgtgtatg tatgttttt