Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_022354677 3284 bp mRNA linear INV 14-MAY-2021 (LOC111066230), transcript variant X8, mRNA. ACCESSION XM_022354677 VERSION XM_022354677.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022354677.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3284 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..3284 /gene="LOC111066230" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:111066230" CDS 305..3148 /gene="LOC111066230" /codon_start=1 /product="amyloid-beta-like protein isoform X8" /protein_id="XP_022210369.2" /db_xref="GeneID:111066230" /translation="MCAALRQRNLWLRSLWAIAVAILATGTVQGASPRWEPQIAVLCE AGQIYQPQYLSEEGRWVTDLSKKTTGATCLRDKMDLLDYCKKAYPNRDITNIVESSHY QKIGGWCRQGALNAAKCKGSHRWIKPFRCLGPFQSDALLVPEGCLFDHIHNASRCWPF VRWNQTGAAACQERGMQMRSFAMLLPCGISLFSGVEFVCCPKHFKTDEIHVKKTDLPV MPPAQISSANDELNDNEEDDSNESNYSKDANDDELDDEDDLMADDEEDEMVADEAAAA GGTGSSSGSAGDASSGSLDDINAEYDSGEDGDNYEEDGAGSEGDNDSDTWDQNGSSSG AKPVGLKVPILSMASSSPSSLPVGPDGSSGKAPLKPDQVTRIPIYSPAQAAAREAAIS NANRINRLAAAAAAAAAAAAAAAATGSGAAAGAGAGTGAGAPPPSTAQPTSDPYFTHF DPHYEHQSYKRLEESHREKVTRVMKDWSDLEEKYQDMRLADPKAAQSFKQRMTARFQT SVQALEEEGNAEKHQLAAMHQQRVLAHINQRKREAMTCYTQALTEQPPNAHHVEKCLQ KLLRALHKDRAHALAHYRHLLNSGGPGGLEAAASERPRTLERLIDIDRAVNQSMTMLK RYPELSAKIAQLMNDYILALRSKDDIPGSSLGMSEEAEAGILDKYRIEIERKVAEKER LRLAEKQRKEQRAAEREKLREEKLRMEAKKVDDMLKSQAAEQQSQSPSQSSSQSQPPA QSQAQQQQQQQQQQQQQSQQQDKSINSKELGIDGGLVTAANLNLDTTKSEKDLADAEY AEATVSTKVQTVLPTVDDDAVQRAVEDVAAAVAHQEAEPQVQHFMTHDLGHRESSFSL RREFAHAHAAKEGRNVYFTLSFAGIALMAAVFVGVAVAKWRTSRSPHAQGFIEVDQNV TTHHPIVQEDKIVPNMQINGYENPTYKYFEVKE" misc_feature 389..907 /gene="LOC111066230" /note="amyloid A4; Region: A4_EXTRA; smart00006" /db_xref="CDD:128326" misc_feature 1604..2173 /gene="LOC111066230" /note="E2 domain of amyloid precursor protein; Region: APP_E2; pfam12925" /db_xref="CDD:463752" misc_feature 2327..>2473 /gene="LOC111066230" /note="DDRGK domain; Region: DDRGK; pfam09756" /db_xref="CDD:370664" misc_feature 2987..3136 /gene="LOC111066230" /note="Beta-amyloid precursor protein C-terminus; Region: APP_amyloid; pfam10515" /db_xref="CDD:463129" ORIGIN 1 gagccactgg gcgcccactg aaggcaacga gttgctcatg tggtcggtgc cactcgcagt 61 cgtttgtgag cgttcgcagc gcaagttgca gcaatactta gtgttaaaca aataagccac 121 caaagcaaat actcgtacaa ttaagcccga gcagcccgag acacccgtcc agagacagag 181 acagccggat tcccttggag aaggagctgt tcgtggagag cagagacaga gacaaagaca 241 aagacaaaag acaagcggag aagcggagaa cagttcagcc aaaggccgaa aaagagtgcg 301 aacaatgtgc gccgcgctgc gtcaacgcaa tttgtggctg cggagcctct gggccatcgc 361 cgtagccatc ctggccactg gcactgtaca gggcgcctcg ccacgctggg agccgcaaat 421 agccgtactc tgcgaagccg gacaaatcta tcagccgcaa tatctgtccg aggagggacg 481 ctgggtgacg gacctcagca agaagacaac tggcgccaca tgtttgcgtg ataaaatgga 541 tttgcttgat tactgcaaga aggcctatcc caatcgagac attaccaaca ttgtggagtc 601 gtcgcactac cagaagatcg gcggctggtg ccgccagggt gctctgaacg cggccaagtg 661 caagggatcc caccgctgga ttaagccgtt ccgttgtctg ggaccattcc aatcggacgc 721 cttgctggtg ccagagggct gcctcttcga tcacatccac aatgcgtccc gctgctggcc 781 attcgtcaga tggaaccaga cgggcgccgc cgcctgccag gaacggggca tgcagatgcg 841 cagcttcgcc atgctgctgc cctgcggcat atcgctcttc tccggcgtgg aattcgtgtg 901 ctgccccaag cacttcaaga ccgatgagat tcatgtgaag aagaccgatc tgccggtgat 961 gcccccggca cagatcagca gtgccaacga tgagctgaac gacaacgagg aggatgacag 1021 caacgagtcc aactactcga aggacgccaa cgatgatgag ctggacgacg aggatgatct 1081 gatggccgac gacgaggagg acgaaatggt ggccgacgag gcggctgcgg ctggcggcac 1141 tgggtccagc tctggctcgg ctggcgatgc cagcagcggc tccctggatg acattaatgc 1201 ggaatatgat agcggcgagg atggcgacaa ctacgaggag gatggcgctg gctccgaggg 1261 cgacaatgac tccgatacct gggaccagaa cggcagctcc agtggcgcca agcccgtggg 1321 cctcaaggta cccattttgt cgatggcctc ctcgtccccg tccagcctgc ccgtgggtcc 1381 cgatggcagc tccggcaagg cacccctgaa gcccgaccag gttacacgca ttcccattta 1441 ctcgccggcc caggctgccg ccagagaggc tgccatcagt aatgccaatc gtatcaatcg 1501 acttgctgcc gcagctgccg ctgctgctgc cgccgctgct gctgctgccg ctactgggtc 1561 tggagctgca gctggagctg gggctgggac tggagctggg gcaccaccac cgtcgacggc 1621 acagcccacc tctgatccgt acttcaccca ctttgatccg cactacgagc accagagcta 1681 caaacgcctt gaggaatcgc atcgcgagaa ggtcacccgt gtgatgaagg actggtccga 1741 tctggaggag aagtaccagg acatgcggct ggccgatccc aaggctgccc aatcatttaa 1801 gcagcgcatg accgcccgct tccagacttc tgttcaggca ctcgaggaag aaggcaacgc 1861 cgagaagcac cagctggccg ccatgcacca gcaacgcgtg ctcgcccaca tcaaccagag 1921 gaagcgcgag gccatgacct gctacaccca ggcccttacc gagcagccac ccaatgccca 1981 tcatgtggag aagtgtctgc agaagctgct gcgggccctg cacaaggacc gagcccatgc 2041 cctggcacac taccgacacc tgttgaactc cggcggaccg ggcggcctgg aggcggctgc 2101 ctcagagcga ccccgcaccc tggagcgtct gatcgacatc gatcgggctg tcaaccagtc 2161 gatgaccatg ctaaagcgct acccagagct gtccgccaaa attgcccagc tgatgaacga 2221 ctacattctg gcactgcgca gcaaggacga cattcccggc tcgtcgctcg gcatgagcga 2281 ggaggcagag gcgggcatcc tggacaagta ccgcatcgag atcgagcgca aggtggccga 2341 gaaggagcga ttgcgtctgg ccgagaagca gcgtaaggag cagcgtgccg ccgagcgtga 2401 gaagctgcgc gaggaaaagc tacgcatgga ggccaagaag gttgacgaca tgctcaagtc 2461 gcaggcggcc gagcagcagt cccaatcccc atcccagtcc tcctcccagt cccagccccc 2521 agctcagtcg caggcacagc agcaacagca acagcaacag cagcagcaac agcagtcgca 2581 gcaacaagac aagagtatta acagcaagga gctgggcatc gacgggggcc tagtaaccgc 2641 tgccaacctg aatctcgaca ccaccaagag cgagaaggac ctggccgatg ccgagtacgc 2701 tgaggccact gtcagcacca aggtgcagac tgtgttgcca acggttgacg atgatgccgt 2761 tcaacgggcg gtggaggatg tggctgctgc cgtggcccac caagaggccg agccgcaggt 2821 gcagcacttc atgacccacg atctgggcca ccgcgaatcg agcttctcgc tgcgccgcga 2881 atttgcgcac gcgcacgcgg ccaaggaggg acgcaacgtc tacttcactc tctcctttgc 2941 cggcatcgcc ctcatggcgg ctgtctttgt gggtgtggcc gttgccaagt ggcgaacatc 3001 gcgctcgccg cacgcccagg gcttcattga ggtggatcag aacgtgacca cacaccatcc 3061 catcgtacag gaggacaaga tcgtgcccaa tatgcagatc aatgggtacg agaatccgac 3121 ctacaagtac tttgaggtga aagagtaagc gtcccagcgg cagcggtaga gcaagcgagc 3181 aggcgagagc acggcacatc aacagcaaaa aacgcaaaaa gcagcagcag caaaaaaaac 3241 aacaacaaca atttcaaaat ggaaaaaaac ttaaacataa tatt