PREDICTED: Drosophila obscura amyloid-beta-like protein
LOCUS XM_022354677 3284 bp mRNA linear INV 14-MAY-2021
(LOC111066230), transcript variant X8, mRNA.
ACCESSION XM_022354677
VERSION XM_022354677.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022354677.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..3284
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..3284
/gene="LOC111066230"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 1 Protein, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 7 samples with support for all annotated
introns"
/db_xref="GeneID:111066230"
CDS 305..3148
/gene="LOC111066230"
/codon_start=1
/product="amyloid-beta-like protein isoform X8"
/protein_id="XP_022210369.2"
/db_xref="GeneID:111066230"
/translation="MCAALRQRNLWLRSLWAIAVAILATGTVQGASPRWEPQIAVLCE
AGQIYQPQYLSEEGRWVTDLSKKTTGATCLRDKMDLLDYCKKAYPNRDITNIVESSHY
QKIGGWCRQGALNAAKCKGSHRWIKPFRCLGPFQSDALLVPEGCLFDHIHNASRCWPF
VRWNQTGAAACQERGMQMRSFAMLLPCGISLFSGVEFVCCPKHFKTDEIHVKKTDLPV
MPPAQISSANDELNDNEEDDSNESNYSKDANDDELDDEDDLMADDEEDEMVADEAAAA
GGTGSSSGSAGDASSGSLDDINAEYDSGEDGDNYEEDGAGSEGDNDSDTWDQNGSSSG
AKPVGLKVPILSMASSSPSSLPVGPDGSSGKAPLKPDQVTRIPIYSPAQAAAREAAIS
NANRINRLAAAAAAAAAAAAAAAATGSGAAAGAGAGTGAGAPPPSTAQPTSDPYFTHF
DPHYEHQSYKRLEESHREKVTRVMKDWSDLEEKYQDMRLADPKAAQSFKQRMTARFQT
SVQALEEEGNAEKHQLAAMHQQRVLAHINQRKREAMTCYTQALTEQPPNAHHVEKCLQ
KLLRALHKDRAHALAHYRHLLNSGGPGGLEAAASERPRTLERLIDIDRAVNQSMTMLK
RYPELSAKIAQLMNDYILALRSKDDIPGSSLGMSEEAEAGILDKYRIEIERKVAEKER
LRLAEKQRKEQRAAEREKLREEKLRMEAKKVDDMLKSQAAEQQSQSPSQSSSQSQPPA
QSQAQQQQQQQQQQQQQSQQQDKSINSKELGIDGGLVTAANLNLDTTKSEKDLADAEY
AEATVSTKVQTVLPTVDDDAVQRAVEDVAAAVAHQEAEPQVQHFMTHDLGHRESSFSL
RREFAHAHAAKEGRNVYFTLSFAGIALMAAVFVGVAVAKWRTSRSPHAQGFIEVDQNV
TTHHPIVQEDKIVPNMQINGYENPTYKYFEVKE"
misc_feature 389..907
/gene="LOC111066230"
/note="amyloid A4; Region: A4_EXTRA; smart00006"
/db_xref="CDD:128326"
misc_feature 1604..2173
/gene="LOC111066230"
/note="E2 domain of amyloid precursor protein; Region:
APP_E2; pfam12925"
/db_xref="CDD:463752"
misc_feature 2327..>2473
/gene="LOC111066230"
/note="DDRGK domain; Region: DDRGK; pfam09756"
/db_xref="CDD:370664"
misc_feature 2987..3136
/gene="LOC111066230"
/note="Beta-amyloid precursor protein C-terminus; Region:
APP_amyloid; pfam10515"
/db_xref="CDD:463129"
ORIGIN
1 gagccactgg gcgcccactg aaggcaacga gttgctcatg tggtcggtgc cactcgcagt
61 cgtttgtgag cgttcgcagc gcaagttgca gcaatactta gtgttaaaca aataagccac
121 caaagcaaat actcgtacaa ttaagcccga gcagcccgag acacccgtcc agagacagag
181 acagccggat tcccttggag aaggagctgt tcgtggagag cagagacaga gacaaagaca
241 aagacaaaag acaagcggag aagcggagaa cagttcagcc aaaggccgaa aaagagtgcg
301 aacaatgtgc gccgcgctgc gtcaacgcaa tttgtggctg cggagcctct gggccatcgc
361 cgtagccatc ctggccactg gcactgtaca gggcgcctcg ccacgctggg agccgcaaat
421 agccgtactc tgcgaagccg gacaaatcta tcagccgcaa tatctgtccg aggagggacg
481 ctgggtgacg gacctcagca agaagacaac tggcgccaca tgtttgcgtg ataaaatgga
541 tttgcttgat tactgcaaga aggcctatcc caatcgagac attaccaaca ttgtggagtc
601 gtcgcactac cagaagatcg gcggctggtg ccgccagggt gctctgaacg cggccaagtg
661 caagggatcc caccgctgga ttaagccgtt ccgttgtctg ggaccattcc aatcggacgc
721 cttgctggtg ccagagggct gcctcttcga tcacatccac aatgcgtccc gctgctggcc
781 attcgtcaga tggaaccaga cgggcgccgc cgcctgccag gaacggggca tgcagatgcg
841 cagcttcgcc atgctgctgc cctgcggcat atcgctcttc tccggcgtgg aattcgtgtg
901 ctgccccaag cacttcaaga ccgatgagat tcatgtgaag aagaccgatc tgccggtgat
961 gcccccggca cagatcagca gtgccaacga tgagctgaac gacaacgagg aggatgacag
1021 caacgagtcc aactactcga aggacgccaa cgatgatgag ctggacgacg aggatgatct
1081 gatggccgac gacgaggagg acgaaatggt ggccgacgag gcggctgcgg ctggcggcac
1141 tgggtccagc tctggctcgg ctggcgatgc cagcagcggc tccctggatg acattaatgc
1201 ggaatatgat agcggcgagg atggcgacaa ctacgaggag gatggcgctg gctccgaggg
1261 cgacaatgac tccgatacct gggaccagaa cggcagctcc agtggcgcca agcccgtggg
1321 cctcaaggta cccattttgt cgatggcctc ctcgtccccg tccagcctgc ccgtgggtcc
1381 cgatggcagc tccggcaagg cacccctgaa gcccgaccag gttacacgca ttcccattta
1441 ctcgccggcc caggctgccg ccagagaggc tgccatcagt aatgccaatc gtatcaatcg
1501 acttgctgcc gcagctgccg ctgctgctgc cgccgctgct gctgctgccg ctactgggtc
1561 tggagctgca gctggagctg gggctgggac tggagctggg gcaccaccac cgtcgacggc
1621 acagcccacc tctgatccgt acttcaccca ctttgatccg cactacgagc accagagcta
1681 caaacgcctt gaggaatcgc atcgcgagaa ggtcacccgt gtgatgaagg actggtccga
1741 tctggaggag aagtaccagg acatgcggct ggccgatccc aaggctgccc aatcatttaa
1801 gcagcgcatg accgcccgct tccagacttc tgttcaggca ctcgaggaag aaggcaacgc
1861 cgagaagcac cagctggccg ccatgcacca gcaacgcgtg ctcgcccaca tcaaccagag
1921 gaagcgcgag gccatgacct gctacaccca ggcccttacc gagcagccac ccaatgccca
1981 tcatgtggag aagtgtctgc agaagctgct gcgggccctg cacaaggacc gagcccatgc
2041 cctggcacac taccgacacc tgttgaactc cggcggaccg ggcggcctgg aggcggctgc
2101 ctcagagcga ccccgcaccc tggagcgtct gatcgacatc gatcgggctg tcaaccagtc
2161 gatgaccatg ctaaagcgct acccagagct gtccgccaaa attgcccagc tgatgaacga
2221 ctacattctg gcactgcgca gcaaggacga cattcccggc tcgtcgctcg gcatgagcga
2281 ggaggcagag gcgggcatcc tggacaagta ccgcatcgag atcgagcgca aggtggccga
2341 gaaggagcga ttgcgtctgg ccgagaagca gcgtaaggag cagcgtgccg ccgagcgtga
2401 gaagctgcgc gaggaaaagc tacgcatgga ggccaagaag gttgacgaca tgctcaagtc
2461 gcaggcggcc gagcagcagt cccaatcccc atcccagtcc tcctcccagt cccagccccc
2521 agctcagtcg caggcacagc agcaacagca acagcaacag cagcagcaac agcagtcgca
2581 gcaacaagac aagagtatta acagcaagga gctgggcatc gacgggggcc tagtaaccgc
2641 tgccaacctg aatctcgaca ccaccaagag cgagaaggac ctggccgatg ccgagtacgc
2701 tgaggccact gtcagcacca aggtgcagac tgtgttgcca acggttgacg atgatgccgt
2761 tcaacgggcg gtggaggatg tggctgctgc cgtggcccac caagaggccg agccgcaggt
2821 gcagcacttc atgacccacg atctgggcca ccgcgaatcg agcttctcgc tgcgccgcga
2881 atttgcgcac gcgcacgcgg ccaaggaggg acgcaacgtc tacttcactc tctcctttgc
2941 cggcatcgcc ctcatggcgg ctgtctttgt gggtgtggcc gttgccaagt ggcgaacatc
3001 gcgctcgccg cacgcccagg gcttcattga ggtggatcag aacgtgacca cacaccatcc
3061 catcgtacag gaggacaaga tcgtgcccaa tatgcagatc aatgggtacg agaatccgac
3121 ctacaagtac tttgaggtga aagagtaagc gtcccagcgg cagcggtaga gcaagcgagc
3181 aggcgagagc acggcacatc aacagcaaaa aacgcaaaaa gcagcagcag caaaaaaaac
3241 aacaacaaca atttcaaaat ggaaaaaaac ttaaacataa tatt