PREDICTED: Drosophila obscura amyloid-beta-like protein
LOCUS XM_022354676 3296 bp mRNA linear INV 14-MAY-2021
(LOC111066230), transcript variant X7, mRNA.
ACCESSION XM_022354676
VERSION XM_022354676.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022354676.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..3296
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..3296
/gene="LOC111066230"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 1 Protein, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 10 samples with support for all annotated
introns"
/db_xref="GeneID:111066230"
CDS 305..3160
/gene="LOC111066230"
/codon_start=1
/product="amyloid-beta-like protein isoform X7"
/protein_id="XP_022210368.2"
/db_xref="GeneID:111066230"
/translation="MCAALRQRNLWLRSLWAIAVAILATGTVQGASPRWEPQIAVLCE
AGQIYQPQYLSEEGRWVTDLSKKTTGATCLRDKMDLLDYCKKAYPNRDITNIVESSHY
QKIGGWCRQGALNAAKCKGSHRWIKPFRCLGPFQSDALLVPEGCLFDHIHNASRCWPF
VRWNQTGAAACQERGMQMRSFAMLLPCGISLFSGVEFVCCPKHFKTDEIHVKKTDLPV
MPPAQISSANDELNDNEEDDSNESNYSKDANDDELDDEDDLMADDEEDEMVADEAAAA
GGTGSSSGSAGDASSGSLDDINAEYDSGEDGDNYEEDGAGSEGDNDSDTWDQNGSSSG
AKPVGLKVPILSMASSSPSSLPVGPDGSSGKAPLKPDQVTRIPIYSPAQAAAREAAIS
NANRINRLAAAAAAAAAAAAAAAATGSGAAAGAGAGTGAGAPPPSTAQPTSDPYFTHF
DPHYEHQSYKVSQKRLEESHREKVTRVMKDWSDLEEKYQDMRLADPKAAQSFKQRMTA
RFQTSVQALEEEGNAEKHQLAAMHQQRVLAHINQRKREAMTCYTQALTEQPPNAHHVE
KCLQKLLRALHKDRAHALAHYRHLLNSGGPGGLEAAASERPRTLERLIDIDRAVNQSM
TMLKRYPELSAKIAQLMNDYILALRSKDDIPGSSLGMSEEAEAGILDKYRIEIERKVA
EKERLRLAEKQRKEQRAAEREKLREEKLRMEAKKVDDMLKSQAAEQQSQSPSQSSSQS
QPPAQSQAQQQQQQQQQQQQQSQQQDKSINSKELGIDGGLVTAANLNLDTTKSEKDLA
DAEYAEATVSTKVQTVLPTVDDDAVQRAVEDVAAAVAHQEAEPQVQHFMTHDLGHRES
SFSLRREFAHAHAAKEGRNVYFTLSFAGIALMAAVFVGVAVAKWRTSRSPHAQGFIEV
DQNVTTHHPIVQEDKIVPNMQINGYENPTYKYFEVKE"
misc_feature 389..907
/gene="LOC111066230"
/note="amyloid A4; Region: A4_EXTRA; smart00006"
/db_xref="CDD:128326"
misc_feature 1604..2185
/gene="LOC111066230"
/note="E2 domain of amyloid precursor protein; Region:
APP_E2; pfam12925"
/db_xref="CDD:463752"
misc_feature 2339..>2485
/gene="LOC111066230"
/note="DDRGK domain; Region: DDRGK; pfam09756"
/db_xref="CDD:370664"
misc_feature 2999..3148
/gene="LOC111066230"
/note="Beta-amyloid precursor protein C-terminus; Region:
APP_amyloid; pfam10515"
/db_xref="CDD:463129"
ORIGIN
1 gagccactgg gcgcccactg aaggcaacga gttgctcatg tggtcggtgc cactcgcagt
61 cgtttgtgag cgttcgcagc gcaagttgca gcaatactta gtgttaaaca aataagccac
121 caaagcaaat actcgtacaa ttaagcccga gcagcccgag acacccgtcc agagacagag
181 acagccggat tcccttggag aaggagctgt tcgtggagag cagagacaga gacaaagaca
241 aagacaaaag acaagcggag aagcggagaa cagttcagcc aaaggccgaa aaagagtgcg
301 aacaatgtgc gccgcgctgc gtcaacgcaa tttgtggctg cggagcctct gggccatcgc
361 cgtagccatc ctggccactg gcactgtaca gggcgcctcg ccacgctggg agccgcaaat
421 agccgtactc tgcgaagccg gacaaatcta tcagccgcaa tatctgtccg aggagggacg
481 ctgggtgacg gacctcagca agaagacaac tggcgccaca tgtttgcgtg ataaaatgga
541 tttgcttgat tactgcaaga aggcctatcc caatcgagac attaccaaca ttgtggagtc
601 gtcgcactac cagaagatcg gcggctggtg ccgccagggt gctctgaacg cggccaagtg
661 caagggatcc caccgctgga ttaagccgtt ccgttgtctg ggaccattcc aatcggacgc
721 cttgctggtg ccagagggct gcctcttcga tcacatccac aatgcgtccc gctgctggcc
781 attcgtcaga tggaaccaga cgggcgccgc cgcctgccag gaacggggca tgcagatgcg
841 cagcttcgcc atgctgctgc cctgcggcat atcgctcttc tccggcgtgg aattcgtgtg
901 ctgccccaag cacttcaaga ccgatgagat tcatgtgaag aagaccgatc tgccggtgat
961 gcccccggca cagatcagca gtgccaacga tgagctgaac gacaacgagg aggatgacag
1021 caacgagtcc aactactcga aggacgccaa cgatgatgag ctggacgacg aggatgatct
1081 gatggccgac gacgaggagg acgaaatggt ggccgacgag gcggctgcgg ctggcggcac
1141 tgggtccagc tctggctcgg ctggcgatgc cagcagcggc tccctggatg acattaatgc
1201 ggaatatgat agcggcgagg atggcgacaa ctacgaggag gatggcgctg gctccgaggg
1261 cgacaatgac tccgatacct gggaccagaa cggcagctcc agtggcgcca agcccgtggg
1321 cctcaaggta cccattttgt cgatggcctc ctcgtccccg tccagcctgc ccgtgggtcc
1381 cgatggcagc tccggcaagg cacccctgaa gcccgaccag gttacacgca ttcccattta
1441 ctcgccggcc caggctgccg ccagagaggc tgccatcagt aatgccaatc gtatcaatcg
1501 acttgctgcc gcagctgccg ctgctgctgc cgccgctgct gctgctgccg ctactgggtc
1561 tggagctgca gctggagctg gggctgggac tggagctggg gcaccaccac cgtcgacggc
1621 acagcccacc tctgatccgt acttcaccca ctttgatccg cactacgagc accagagcta
1681 caaagtaagt cagaaacgcc ttgaggaatc gcatcgcgag aaggtcaccc gtgtgatgaa
1741 ggactggtcc gatctggagg agaagtacca ggacatgcgg ctggccgatc ccaaggctgc
1801 ccaatcattt aagcagcgca tgaccgcccg cttccagact tctgttcagg cactcgagga
1861 agaaggcaac gccgagaagc accagctggc cgccatgcac cagcaacgcg tgctcgccca
1921 catcaaccag aggaagcgcg aggccatgac ctgctacacc caggccctta ccgagcagcc
1981 acccaatgcc catcatgtgg agaagtgtct gcagaagctg ctgcgggccc tgcacaagga
2041 ccgagcccat gccctggcac actaccgaca cctgttgaac tccggcggac cgggcggcct
2101 ggaggcggct gcctcagagc gaccccgcac cctggagcgt ctgatcgaca tcgatcgggc
2161 tgtcaaccag tcgatgacca tgctaaagcg ctacccagag ctgtccgcca aaattgccca
2221 gctgatgaac gactacattc tggcactgcg cagcaaggac gacattcccg gctcgtcgct
2281 cggcatgagc gaggaggcag aggcgggcat cctggacaag taccgcatcg agatcgagcg
2341 caaggtggcc gagaaggagc gattgcgtct ggccgagaag cagcgtaagg agcagcgtgc
2401 cgccgagcgt gagaagctgc gcgaggaaaa gctacgcatg gaggccaaga aggttgacga
2461 catgctcaag tcgcaggcgg ccgagcagca gtcccaatcc ccatcccagt cctcctccca
2521 gtcccagccc ccagctcagt cgcaggcaca gcagcaacag caacagcaac agcagcagca
2581 acagcagtcg cagcaacaag acaagagtat taacagcaag gagctgggca tcgacggggg
2641 cctagtaacc gctgccaacc tgaatctcga caccaccaag agcgagaagg acctggccga
2701 tgccgagtac gctgaggcca ctgtcagcac caaggtgcag actgtgttgc caacggttga
2761 cgatgatgcc gttcaacggg cggtggagga tgtggctgct gccgtggccc accaagaggc
2821 cgagccgcag gtgcagcact tcatgaccca cgatctgggc caccgcgaat cgagcttctc
2881 gctgcgccgc gaatttgcgc acgcgcacgc ggccaaggag ggacgcaacg tctacttcac
2941 tctctccttt gccggcatcg ccctcatggc ggctgtcttt gtgggtgtgg ccgttgccaa
3001 gtggcgaaca tcgcgctcgc cgcacgccca gggcttcatt gaggtggatc agaacgtgac
3061 cacacaccat cccatcgtac aggaggacaa gatcgtgccc aatatgcaga tcaatgggta
3121 cgagaatccg acctacaagt actttgaggt gaaagagtaa gcgtcccagc ggcagcggta
3181 gagcaagcga gcaggcgaga gcacggcaca tcaacagcaa aaaacgcaaa aagcagcagc
3241 agcaaaaaaa acaacaacaa caatttcaaa atggaaaaaa acttaaacat aatatt