PREDICTED: Drosophila obscura amyloid-beta-like protein
LOCUS XM_022354675 3287 bp mRNA linear INV 14-MAY-2021
(LOC111066230), transcript variant X6, mRNA.
ACCESSION XM_022354675
VERSION XM_022354675.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022354675.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..3287
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..3287
/gene="LOC111066230"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 2 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 8 samples with support for all annotated
introns"
/db_xref="GeneID:111066230"
CDS 305..3151
/gene="LOC111066230"
/codon_start=1
/product="amyloid-beta-like protein isoform X6"
/protein_id="XP_022210367.2"
/db_xref="GeneID:111066230"
/translation="MCAALRQRNLWLRSLWAIAVAILATGTVQGASPRWEPQIAVLCE
AGQIYQPQYLSEEGRWVTDLSKKTTGATCLRDKMDLLDYCKKAYPNRDITNIVESSHY
QKIGGWCRQGALNAAKCKGSHRWIKPFRCLEGPFQSDALLVPEGCLFDHIHNASRCWP
FVRWNQTGAAACQERGMQMRSFAMLLPCGISLFSGVEFVCCPKHFKTDEIHVKKTDLP
VMPPAQISSANDELNDNEEDDSNESNYSKDANDDELDDEDDLMADDEEDEMVADEAAA
AGGTGSSSGSAGDASSGSLDDINAEYDSGEDGDNYEEDGAGSEGDNDSDTWDQNGSSS
GAKPVGLKVPILSMASSSPSSLPVGPDGSSGKAPLKPDQVTRIPIYSPAQAAAREAAI
SNANRINRLAAAAAAAAAAAAAAAATGSGAAAGAGAGTGAGAPPPSTAQPTSDPYFTH
FDPHYEHQSYKRLEESHREKVTRVMKDWSDLEEKYQDMRLADPKAAQSFKQRMTARFQ
TSVQALEEEGNAEKHQLAAMHQQRVLAHINQRKREAMTCYTQALTEQPPNAHHVEKCL
QKLLRALHKDRAHALAHYRHLLNSGGPGGLEAAASERPRTLERLIDIDRAVNQSMTML
KRYPELSAKIAQLMNDYILALRSKDDIPGSSLGMSEEAEAGILDKYRIEIERKVAEKE
RLRLAEKQRKEQRAAEREKLREEKLRMEAKKVDDMLKSQAAEQQSQSPSQSSSQSQPP
AQSQAQQQQQQQQQQQQQSQQQDKSINSKELGIDGGLVTAANLNLDTTKSEKDLADAE
YAEATVSTKVQTVLPTVDDDAVQRAVEDVAAAVAHQEAEPQVQHFMTHDLGHRESSFS
LRREFAHAHAAKEGRNVYFTLSFAGIALMAAVFVGVAVAKWRTSRSPHAQGFIEVDQN
VTTHHPIVQEDKIVPNMQINGYENPTYKYFEVKE"
misc_feature 389..910
/gene="LOC111066230"
/note="amyloid A4; Region: A4_EXTRA; smart00006"
/db_xref="CDD:128326"
misc_feature 1607..2176
/gene="LOC111066230"
/note="E2 domain of amyloid precursor protein; Region:
APP_E2; pfam12925"
/db_xref="CDD:463752"
misc_feature 2330..>2476
/gene="LOC111066230"
/note="DDRGK domain; Region: DDRGK; pfam09756"
/db_xref="CDD:370664"
misc_feature 2990..3139
/gene="LOC111066230"
/note="Beta-amyloid precursor protein C-terminus; Region:
APP_amyloid; pfam10515"
/db_xref="CDD:463129"
ORIGIN
1 gagccactgg gcgcccactg aaggcaacga gttgctcatg tggtcggtgc cactcgcagt
61 cgtttgtgag cgttcgcagc gcaagttgca gcaatactta gtgttaaaca aataagccac
121 caaagcaaat actcgtacaa ttaagcccga gcagcccgag acacccgtcc agagacagag
181 acagccggat tcccttggag aaggagctgt tcgtggagag cagagacaga gacaaagaca
241 aagacaaaag acaagcggag aagcggagaa cagttcagcc aaaggccgaa aaagagtgcg
301 aacaatgtgc gccgcgctgc gtcaacgcaa tttgtggctg cggagcctct gggccatcgc
361 cgtagccatc ctggccactg gcactgtaca gggcgcctcg ccacgctggg agccgcaaat
421 agccgtactc tgcgaagccg gacaaatcta tcagccgcaa tatctgtccg aggagggacg
481 ctgggtgacg gacctcagca agaagacaac tggcgccaca tgtttgcgtg ataaaatgga
541 tttgcttgat tactgcaaga aggcctatcc caatcgagac attaccaaca ttgtggagtc
601 gtcgcactac cagaagatcg gcggctggtg ccgccagggt gctctgaacg cggccaagtg
661 caagggatcc caccgctgga ttaagccgtt ccgttgtctg gaaggaccat tccaatcgga
721 cgccttgctg gtgccagagg gctgcctctt cgatcacatc cacaatgcgt cccgctgctg
781 gccattcgtc agatggaacc agacgggcgc cgccgcctgc caggaacggg gcatgcagat
841 gcgcagcttc gccatgctgc tgccctgcgg catatcgctc ttctccggcg tggaattcgt
901 gtgctgcccc aagcacttca agaccgatga gattcatgtg aagaagaccg atctgccggt
961 gatgcccccg gcacagatca gcagtgccaa cgatgagctg aacgacaacg aggaggatga
1021 cagcaacgag tccaactact cgaaggacgc caacgatgat gagctggacg acgaggatga
1081 tctgatggcc gacgacgagg aggacgaaat ggtggccgac gaggcggctg cggctggcgg
1141 cactgggtcc agctctggct cggctggcga tgccagcagc ggctccctgg atgacattaa
1201 tgcggaatat gatagcggcg aggatggcga caactacgag gaggatggcg ctggctccga
1261 gggcgacaat gactccgata cctgggacca gaacggcagc tccagtggcg ccaagcccgt
1321 gggcctcaag gtacccattt tgtcgatggc ctcctcgtcc ccgtccagcc tgcccgtggg
1381 tcccgatggc agctccggca aggcacccct gaagcccgac caggttacac gcattcccat
1441 ttactcgccg gcccaggctg ccgccagaga ggctgccatc agtaatgcca atcgtatcaa
1501 tcgacttgct gccgcagctg ccgctgctgc tgccgccgct gctgctgctg ccgctactgg
1561 gtctggagct gcagctggag ctggggctgg gactggagct ggggcaccac caccgtcgac
1621 ggcacagccc acctctgatc cgtacttcac ccactttgat ccgcactacg agcaccagag
1681 ctacaaacgc cttgaggaat cgcatcgcga gaaggtcacc cgtgtgatga aggactggtc
1741 cgatctggag gagaagtacc aggacatgcg gctggccgat cccaaggctg cccaatcatt
1801 taagcagcgc atgaccgccc gcttccagac ttctgttcag gcactcgagg aagaaggcaa
1861 cgccgagaag caccagctgg ccgccatgca ccagcaacgc gtgctcgccc acatcaacca
1921 gaggaagcgc gaggccatga cctgctacac ccaggccctt accgagcagc cacccaatgc
1981 ccatcatgtg gagaagtgtc tgcagaagct gctgcgggcc ctgcacaagg accgagccca
2041 tgccctggca cactaccgac acctgttgaa ctccggcgga ccgggcggcc tggaggcggc
2101 tgcctcagag cgaccccgca ccctggagcg tctgatcgac atcgatcggg ctgtcaacca
2161 gtcgatgacc atgctaaagc gctacccaga gctgtccgcc aaaattgccc agctgatgaa
2221 cgactacatt ctggcactgc gcagcaagga cgacattccc ggctcgtcgc tcggcatgag
2281 cgaggaggca gaggcgggca tcctggacaa gtaccgcatc gagatcgagc gcaaggtggc
2341 cgagaaggag cgattgcgtc tggccgagaa gcagcgtaag gagcagcgtg ccgccgagcg
2401 tgagaagctg cgcgaggaaa agctacgcat ggaggccaag aaggttgacg acatgctcaa
2461 gtcgcaggcg gccgagcagc agtcccaatc cccatcccag tcctcctccc agtcccagcc
2521 cccagctcag tcgcaggcac agcagcaaca gcaacagcaa cagcagcagc aacagcagtc
2581 gcagcaacaa gacaagagta ttaacagcaa ggagctgggc atcgacgggg gcctagtaac
2641 cgctgccaac ctgaatctcg acaccaccaa gagcgagaag gacctggccg atgccgagta
2701 cgctgaggcc actgtcagca ccaaggtgca gactgtgttg ccaacggttg acgatgatgc
2761 cgttcaacgg gcggtggagg atgtggctgc tgccgtggcc caccaagagg ccgagccgca
2821 ggtgcagcac ttcatgaccc acgatctggg ccaccgcgaa tcgagcttct cgctgcgccg
2881 cgaatttgcg cacgcgcacg cggccaagga gggacgcaac gtctacttca ctctctcctt
2941 tgccggcatc gccctcatgg cggctgtctt tgtgggtgtg gccgttgcca agtggcgaac
3001 atcgcgctcg ccgcacgccc agggcttcat tgaggtggat cagaacgtga ccacacacca
3061 tcccatcgta caggaggaca agatcgtgcc caatatgcag atcaatgggt acgagaatcc
3121 gacctacaag tactttgagg tgaaagagta agcgtcccag cggcagcggt agagcaagcg
3181 agcaggcgag agcacggcac atcaacagca aaaaacgcaa aaagcagcag cagcaaaaaa
3241 aacaacaaca acaatttcaa aatggaaaaa aacttaaaca taatatt