Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_022354672 3299 bp mRNA linear INV 14-MAY-2021 (LOC111066230), transcript variant X3, mRNA. ACCESSION XM_022354672 VERSION XM_022354672.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022354672.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3299 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..3299 /gene="LOC111066230" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns" /db_xref="GeneID:111066230" CDS 305..3163 /gene="LOC111066230" /codon_start=1 /product="amyloid-beta-like protein isoform X3" /protein_id="XP_022210364.2" /db_xref="GeneID:111066230" /translation="MCAALRQRNLWLRSLWAIAVAILATGTVQGASPRWEPQIAVLCE AGQIYQPQYLSEEGRWVTDLSKKTTGATCLRDKMDLLDYCKKAYPNRDITNIVESSHY QKIGGWCRQGALNAAKCKGSHRWIKPFRCLEGPFQSDALLVPEGCLFDHIHNASRCWP FVRWNQTGAAACQERGMQMRSFAMLLPCGISLFSGVEFVCCPKHFKTDEIHVKKTDLP VMPPAQISSANDELNDNEEDDSNESNYSKDANDDELDDEDDLMADDEEDEMVADEAAA AGGTGSSSGSAGDASSGSLDDINAEYDSGEDGDNYEEDGAGSEGDNDSDTWDQNGSSS GAKPVGLKVPILSMASSSPSSLPVGPDGSSGKAPLKPDQVTRIPIYSPAQAAAREAAI SNANRINRLAAAAAAAAAAAAAAAATGSGAAAGAGAGTGAGAPPPSTAQPTSDPYFTH FDPHYEHQSYKEAQQRLEESHREKVTRVMKDWSDLEEKYQDMRLADPKAAQSFKQRMT ARFQTSVQALEEEGNAEKHQLAAMHQQRVLAHINQRKREAMTCYTQALTEQPPNAHHV EKCLQKLLRALHKDRAHALAHYRHLLNSGGPGGLEAAASERPRTLERLIDIDRAVNQS MTMLKRYPELSAKIAQLMNDYILALRSKDDIPGSSLGMSEEAEAGILDKYRIEIERKV AEKERLRLAEKQRKEQRAAEREKLREEKLRMEAKKVDDMLKSQAAEQQSQSPSQSSSQ SQPPAQSQAQQQQQQQQQQQQQSQQQDKSINSKELGIDGGLVTAANLNLDTTKSEKDL ADAEYAEATVSTKVQTVLPTVDDDAVQRAVEDVAAAVAHQEAEPQVQHFMTHDLGHRE SSFSLRREFAHAHAAKEGRNVYFTLSFAGIALMAAVFVGVAVAKWRTSRSPHAQGFIE VDQNVTTHHPIVQEDKIVPNMQINGYENPTYKYFEVKE" misc_feature 389..910 /gene="LOC111066230" /note="amyloid A4; Region: A4_EXTRA; smart00006" /db_xref="CDD:128326" misc_feature 1607..2188 /gene="LOC111066230" /note="E2 domain of amyloid precursor protein; Region: APP_E2; pfam12925" /db_xref="CDD:463752" misc_feature 2342..>2488 /gene="LOC111066230" /note="DDRGK domain; Region: DDRGK; pfam09756" /db_xref="CDD:370664" misc_feature 3002..3151 /gene="LOC111066230" /note="Beta-amyloid precursor protein C-terminus; Region: APP_amyloid; pfam10515" /db_xref="CDD:463129" ORIGIN 1 gagccactgg gcgcccactg aaggcaacga gttgctcatg tggtcggtgc cactcgcagt 61 cgtttgtgag cgttcgcagc gcaagttgca gcaatactta gtgttaaaca aataagccac 121 caaagcaaat actcgtacaa ttaagcccga gcagcccgag acacccgtcc agagacagag 181 acagccggat tcccttggag aaggagctgt tcgtggagag cagagacaga gacaaagaca 241 aagacaaaag acaagcggag aagcggagaa cagttcagcc aaaggccgaa aaagagtgcg 301 aacaatgtgc gccgcgctgc gtcaacgcaa tttgtggctg cggagcctct gggccatcgc 361 cgtagccatc ctggccactg gcactgtaca gggcgcctcg ccacgctggg agccgcaaat 421 agccgtactc tgcgaagccg gacaaatcta tcagccgcaa tatctgtccg aggagggacg 481 ctgggtgacg gacctcagca agaagacaac tggcgccaca tgtttgcgtg ataaaatgga 541 tttgcttgat tactgcaaga aggcctatcc caatcgagac attaccaaca ttgtggagtc 601 gtcgcactac cagaagatcg gcggctggtg ccgccagggt gctctgaacg cggccaagtg 661 caagggatcc caccgctgga ttaagccgtt ccgttgtctg gaaggaccat tccaatcgga 721 cgccttgctg gtgccagagg gctgcctctt cgatcacatc cacaatgcgt cccgctgctg 781 gccattcgtc agatggaacc agacgggcgc cgccgcctgc caggaacggg gcatgcagat 841 gcgcagcttc gccatgctgc tgccctgcgg catatcgctc ttctccggcg tggaattcgt 901 gtgctgcccc aagcacttca agaccgatga gattcatgtg aagaagaccg atctgccggt 961 gatgcccccg gcacagatca gcagtgccaa cgatgagctg aacgacaacg aggaggatga 1021 cagcaacgag tccaactact cgaaggacgc caacgatgat gagctggacg acgaggatga 1081 tctgatggcc gacgacgagg aggacgaaat ggtggccgac gaggcggctg cggctggcgg 1141 cactgggtcc agctctggct cggctggcga tgccagcagc ggctccctgg atgacattaa 1201 tgcggaatat gatagcggcg aggatggcga caactacgag gaggatggcg ctggctccga 1261 gggcgacaat gactccgata cctgggacca gaacggcagc tccagtggcg ccaagcccgt 1321 gggcctcaag gtacccattt tgtcgatggc ctcctcgtcc ccgtccagcc tgcccgtggg 1381 tcccgatggc agctccggca aggcacccct gaagcccgac caggttacac gcattcccat 1441 ttactcgccg gcccaggctg ccgccagaga ggctgccatc agtaatgcca atcgtatcaa 1501 tcgacttgct gccgcagctg ccgctgctgc tgccgccgct gctgctgctg ccgctactgg 1561 gtctggagct gcagctggag ctggggctgg gactggagct ggggcaccac caccgtcgac 1621 ggcacagccc acctctgatc cgtacttcac ccactttgat ccgcactacg agcaccagag 1681 ctacaaagaa gcccaacagc gccttgagga atcgcatcgc gagaaggtca cccgtgtgat 1741 gaaggactgg tccgatctgg aggagaagta ccaggacatg cggctggccg atcccaaggc 1801 tgcccaatca tttaagcagc gcatgaccgc ccgcttccag acttctgttc aggcactcga 1861 ggaagaaggc aacgccgaga agcaccagct ggccgccatg caccagcaac gcgtgctcgc 1921 ccacatcaac cagaggaagc gcgaggccat gacctgctac acccaggccc ttaccgagca 1981 gccacccaat gcccatcatg tggagaagtg tctgcagaag ctgctgcggg ccctgcacaa 2041 ggaccgagcc catgccctgg cacactaccg acacctgttg aactccggcg gaccgggcgg 2101 cctggaggcg gctgcctcag agcgaccccg caccctggag cgtctgatcg acatcgatcg 2161 ggctgtcaac cagtcgatga ccatgctaaa gcgctaccca gagctgtccg ccaaaattgc 2221 ccagctgatg aacgactaca ttctggcact gcgcagcaag gacgacattc ccggctcgtc 2281 gctcggcatg agcgaggagg cagaggcggg catcctggac aagtaccgca tcgagatcga 2341 gcgcaaggtg gccgagaagg agcgattgcg tctggccgag aagcagcgta aggagcagcg 2401 tgccgccgag cgtgagaagc tgcgcgagga aaagctacgc atggaggcca agaaggttga 2461 cgacatgctc aagtcgcagg cggccgagca gcagtcccaa tccccatccc agtcctcctc 2521 ccagtcccag cccccagctc agtcgcaggc acagcagcaa cagcaacagc aacagcagca 2581 gcaacagcag tcgcagcaac aagacaagag tattaacagc aaggagctgg gcatcgacgg 2641 gggcctagta accgctgcca acctgaatct cgacaccacc aagagcgaga aggacctggc 2701 cgatgccgag tacgctgagg ccactgtcag caccaaggtg cagactgtgt tgccaacggt 2761 tgacgatgat gccgttcaac gggcggtgga ggatgtggct gctgccgtgg cccaccaaga 2821 ggccgagccg caggtgcagc acttcatgac ccacgatctg ggccaccgcg aatcgagctt 2881 ctcgctgcgc cgcgaatttg cgcacgcgca cgcggccaag gagggacgca acgtctactt 2941 cactctctcc tttgccggca tcgccctcat ggcggctgtc tttgtgggtg tggccgttgc 3001 caagtggcga acatcgcgct cgccgcacgc ccagggcttc attgaggtgg atcagaacgt 3061 gaccacacac catcccatcg tacaggagga caagatcgtg cccaatatgc agatcaatgg 3121 gtacgagaat ccgacctaca agtactttga ggtgaaagag taagcgtccc agcggcagcg 3181 gtagagcaag cgagcaggcg agagcacggc acatcaacag caaaaaacgc aaaaagcagc 3241 agcagcaaaa aaaacaacaa caacaatttc aaaatggaaa aaaacttaaa cataatatt