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LOCUS XM_022354671 3308 bp mRNA linear INV 14-MAY-2021 (LOC111066230), transcript variant X2, mRNA. ACCESSION XM_022354671 VERSION XM_022354671.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila obscura ORGANISM Drosophila obscura Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024542752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 14, 2021 this sequence version replaced XM_022354671.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila obscura Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3308 /organism="Drosophila obscura" /mol_type="mRNA" /isolate="BZ-5 IFL" /db_xref="taxon:7282" /chromosome="Unknown" /sex="male" /tissue_type="whole fly" /dev_stage="Adult fly" /geo_loc_name="Serbia: Babin Zub" /collection_date="2017" gene 1..3308 /gene="LOC111066230" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns" /db_xref="GeneID:111066230" CDS 305..3172 /gene="LOC111066230" /codon_start=1 /product="amyloid-beta-like protein isoform X2" /protein_id="XP_022210363.2" /db_xref="GeneID:111066230" /translation="MCAALRQRNLWLRSLWAIAVAILATGTVQGASPRWEPQIAVLCE AGQIYQPQYLSEEGRWVTDLSKKTTGATCLRDKMDLLDYCKKAYPNRDITNIVESSHY QKIGGWCRQGALNAAKCKGSHRWIKPFRCLGPFQSDALLVPEGCLFDHIHNASRCWPF VRWNQTGAAACQERGMQMRSFAMLLPCGISLFSGVEFVCCPKHFKTDEIHVKKTDLPV MPPAQISSANDELNDNEEDDSNESNYSKDANDDELDDEDDLMADDEEDEMVADEAAAA GGTGSSSGSAGDASSGSLDDINAEYDSGEDGDNYEEDGAGSEGDNDSDTWDQNGSSSG AKPVGLKVPILSMASSSPSSLPVGPDGSSGKAPLKPDQVTRIPIYSPAQAAAREAAIS NANRINRLAAAAAAAAAAAAAAAATGSGAAAGAGAGTGAGAPPPSTAQPTSDPYFTHF DPHYEHQSYKVSQKEAQQRLEESHREKVTRVMKDWSDLEEKYQDMRLADPKAAQSFKQ RMTARFQTSVQALEEEGNAEKHQLAAMHQQRVLAHINQRKREAMTCYTQALTEQPPNA HHVEKCLQKLLRALHKDRAHALAHYRHLLNSGGPGGLEAAASERPRTLERLIDIDRAV NQSMTMLKRYPELSAKIAQLMNDYILALRSKDDIPGSSLGMSEEAEAGILDKYRIEIE RKVAEKERLRLAEKQRKEQRAAEREKLREEKLRMEAKKVDDMLKSQAAEQQSQSPSQS SSQSQPPAQSQAQQQQQQQQQQQQQSQQQDKSINSKELGIDGGLVTAANLNLDTTKSE KDLADAEYAEATVSTKVQTVLPTVDDDAVQRAVEDVAAAVAHQEAEPQVQHFMTHDLG HRESSFSLRREFAHAHAAKEGRNVYFTLSFAGIALMAAVFVGVAVAKWRTSRSPHAQG FIEVDQNVTTHHPIVQEDKIVPNMQINGYENPTYKYFEVKE" misc_feature 389..907 /gene="LOC111066230" /note="amyloid A4; Region: A4_EXTRA; smart00006" /db_xref="CDD:128326" misc_feature 1604..2197 /gene="LOC111066230" /note="E2 domain of amyloid precursor protein; Region: APP_E2; pfam12925" /db_xref="CDD:463752" misc_feature 2351..>2497 /gene="LOC111066230" /note="DDRGK domain; Region: DDRGK; pfam09756" /db_xref="CDD:370664" misc_feature 3011..3160 /gene="LOC111066230" /note="Beta-amyloid precursor protein C-terminus; Region: APP_amyloid; pfam10515" /db_xref="CDD:463129" ORIGIN 1 gagccactgg gcgcccactg aaggcaacga gttgctcatg tggtcggtgc cactcgcagt 61 cgtttgtgag cgttcgcagc gcaagttgca gcaatactta gtgttaaaca aataagccac 121 caaagcaaat actcgtacaa ttaagcccga gcagcccgag acacccgtcc agagacagag 181 acagccggat tcccttggag aaggagctgt tcgtggagag cagagacaga gacaaagaca 241 aagacaaaag acaagcggag aagcggagaa cagttcagcc aaaggccgaa aaagagtgcg 301 aacaatgtgc gccgcgctgc gtcaacgcaa tttgtggctg cggagcctct gggccatcgc 361 cgtagccatc ctggccactg gcactgtaca gggcgcctcg ccacgctggg agccgcaaat 421 agccgtactc tgcgaagccg gacaaatcta tcagccgcaa tatctgtccg aggagggacg 481 ctgggtgacg gacctcagca agaagacaac tggcgccaca tgtttgcgtg ataaaatgga 541 tttgcttgat tactgcaaga aggcctatcc caatcgagac attaccaaca ttgtggagtc 601 gtcgcactac cagaagatcg gcggctggtg ccgccagggt gctctgaacg cggccaagtg 661 caagggatcc caccgctgga ttaagccgtt ccgttgtctg ggaccattcc aatcggacgc 721 cttgctggtg ccagagggct gcctcttcga tcacatccac aatgcgtccc gctgctggcc 781 attcgtcaga tggaaccaga cgggcgccgc cgcctgccag gaacggggca tgcagatgcg 841 cagcttcgcc atgctgctgc cctgcggcat atcgctcttc tccggcgtgg aattcgtgtg 901 ctgccccaag cacttcaaga ccgatgagat tcatgtgaag aagaccgatc tgccggtgat 961 gcccccggca cagatcagca gtgccaacga tgagctgaac gacaacgagg aggatgacag 1021 caacgagtcc aactactcga aggacgccaa cgatgatgag ctggacgacg aggatgatct 1081 gatggccgac gacgaggagg acgaaatggt ggccgacgag gcggctgcgg ctggcggcac 1141 tgggtccagc tctggctcgg ctggcgatgc cagcagcggc tccctggatg acattaatgc 1201 ggaatatgat agcggcgagg atggcgacaa ctacgaggag gatggcgctg gctccgaggg 1261 cgacaatgac tccgatacct gggaccagaa cggcagctcc agtggcgcca agcccgtggg 1321 cctcaaggta cccattttgt cgatggcctc ctcgtccccg tccagcctgc ccgtgggtcc 1381 cgatggcagc tccggcaagg cacccctgaa gcccgaccag gttacacgca ttcccattta 1441 ctcgccggcc caggctgccg ccagagaggc tgccatcagt aatgccaatc gtatcaatcg 1501 acttgctgcc gcagctgccg ctgctgctgc cgccgctgct gctgctgccg ctactgggtc 1561 tggagctgca gctggagctg gggctgggac tggagctggg gcaccaccac cgtcgacggc 1621 acagcccacc tctgatccgt acttcaccca ctttgatccg cactacgagc accagagcta 1681 caaagtaagt cagaaagaag cccaacagcg ccttgaggaa tcgcatcgcg agaaggtcac 1741 ccgtgtgatg aaggactggt ccgatctgga ggagaagtac caggacatgc ggctggccga 1801 tcccaaggct gcccaatcat ttaagcagcg catgaccgcc cgcttccaga cttctgttca 1861 ggcactcgag gaagaaggca acgccgagaa gcaccagctg gccgccatgc accagcaacg 1921 cgtgctcgcc cacatcaacc agaggaagcg cgaggccatg acctgctaca cccaggccct 1981 taccgagcag ccacccaatg cccatcatgt ggagaagtgt ctgcagaagc tgctgcgggc 2041 cctgcacaag gaccgagccc atgccctggc acactaccga cacctgttga actccggcgg 2101 accgggcggc ctggaggcgg ctgcctcaga gcgaccccgc accctggagc gtctgatcga 2161 catcgatcgg gctgtcaacc agtcgatgac catgctaaag cgctacccag agctgtccgc 2221 caaaattgcc cagctgatga acgactacat tctggcactg cgcagcaagg acgacattcc 2281 cggctcgtcg ctcggcatga gcgaggaggc agaggcgggc atcctggaca agtaccgcat 2341 cgagatcgag cgcaaggtgg ccgagaagga gcgattgcgt ctggccgaga agcagcgtaa 2401 ggagcagcgt gccgccgagc gtgagaagct gcgcgaggaa aagctacgca tggaggccaa 2461 gaaggttgac gacatgctca agtcgcaggc ggccgagcag cagtcccaat ccccatccca 2521 gtcctcctcc cagtcccagc ccccagctca gtcgcaggca cagcagcaac agcaacagca 2581 acagcagcag caacagcagt cgcagcaaca agacaagagt attaacagca aggagctggg 2641 catcgacggg ggcctagtaa ccgctgccaa cctgaatctc gacaccacca agagcgagaa 2701 ggacctggcc gatgccgagt acgctgaggc cactgtcagc accaaggtgc agactgtgtt 2761 gccaacggtt gacgatgatg ccgttcaacg ggcggtggag gatgtggctg ctgccgtggc 2821 ccaccaagag gccgagccgc aggtgcagca cttcatgacc cacgatctgg gccaccgcga 2881 atcgagcttc tcgctgcgcc gcgaatttgc gcacgcgcac gcggccaagg agggacgcaa 2941 cgtctacttc actctctcct ttgccggcat cgccctcatg gcggctgtct ttgtgggtgt 3001 ggccgttgcc aagtggcgaa catcgcgctc gccgcacgcc cagggcttca ttgaggtgga 3061 tcagaacgtg accacacacc atcccatcgt acaggaggac aagatcgtgc ccaatatgca 3121 gatcaatggg tacgagaatc cgacctacaa gtactttgag gtgaaagagt aagcgtccca 3181 gcggcagcgg tagagcaagc gagcaggcga gagcacggca catcaacagc aaaaaacgca 3241 aaaagcagca gcagcaaaaa aaacaacaac aacaatttca aaatggaaaa aaacttaaac 3301 ataatatt