PREDICTED: Drosophila obscura amyloid-beta-like protein
LOCUS XM_022354671 3308 bp mRNA linear INV 14-MAY-2021
(LOC111066230), transcript variant X2, mRNA.
ACCESSION XM_022354671
VERSION XM_022354671.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022354671.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..3308
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..3308
/gene="LOC111066230"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 2 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 9 samples with support for all annotated
introns"
/db_xref="GeneID:111066230"
CDS 305..3172
/gene="LOC111066230"
/codon_start=1
/product="amyloid-beta-like protein isoform X2"
/protein_id="XP_022210363.2"
/db_xref="GeneID:111066230"
/translation="MCAALRQRNLWLRSLWAIAVAILATGTVQGASPRWEPQIAVLCE
AGQIYQPQYLSEEGRWVTDLSKKTTGATCLRDKMDLLDYCKKAYPNRDITNIVESSHY
QKIGGWCRQGALNAAKCKGSHRWIKPFRCLGPFQSDALLVPEGCLFDHIHNASRCWPF
VRWNQTGAAACQERGMQMRSFAMLLPCGISLFSGVEFVCCPKHFKTDEIHVKKTDLPV
MPPAQISSANDELNDNEEDDSNESNYSKDANDDELDDEDDLMADDEEDEMVADEAAAA
GGTGSSSGSAGDASSGSLDDINAEYDSGEDGDNYEEDGAGSEGDNDSDTWDQNGSSSG
AKPVGLKVPILSMASSSPSSLPVGPDGSSGKAPLKPDQVTRIPIYSPAQAAAREAAIS
NANRINRLAAAAAAAAAAAAAAAATGSGAAAGAGAGTGAGAPPPSTAQPTSDPYFTHF
DPHYEHQSYKVSQKEAQQRLEESHREKVTRVMKDWSDLEEKYQDMRLADPKAAQSFKQ
RMTARFQTSVQALEEEGNAEKHQLAAMHQQRVLAHINQRKREAMTCYTQALTEQPPNA
HHVEKCLQKLLRALHKDRAHALAHYRHLLNSGGPGGLEAAASERPRTLERLIDIDRAV
NQSMTMLKRYPELSAKIAQLMNDYILALRSKDDIPGSSLGMSEEAEAGILDKYRIEIE
RKVAEKERLRLAEKQRKEQRAAEREKLREEKLRMEAKKVDDMLKSQAAEQQSQSPSQS
SSQSQPPAQSQAQQQQQQQQQQQQQSQQQDKSINSKELGIDGGLVTAANLNLDTTKSE
KDLADAEYAEATVSTKVQTVLPTVDDDAVQRAVEDVAAAVAHQEAEPQVQHFMTHDLG
HRESSFSLRREFAHAHAAKEGRNVYFTLSFAGIALMAAVFVGVAVAKWRTSRSPHAQG
FIEVDQNVTTHHPIVQEDKIVPNMQINGYENPTYKYFEVKE"
misc_feature 389..907
/gene="LOC111066230"
/note="amyloid A4; Region: A4_EXTRA; smart00006"
/db_xref="CDD:128326"
misc_feature 1604..2197
/gene="LOC111066230"
/note="E2 domain of amyloid precursor protein; Region:
APP_E2; pfam12925"
/db_xref="CDD:463752"
misc_feature 2351..>2497
/gene="LOC111066230"
/note="DDRGK domain; Region: DDRGK; pfam09756"
/db_xref="CDD:370664"
misc_feature 3011..3160
/gene="LOC111066230"
/note="Beta-amyloid precursor protein C-terminus; Region:
APP_amyloid; pfam10515"
/db_xref="CDD:463129"
ORIGIN
1 gagccactgg gcgcccactg aaggcaacga gttgctcatg tggtcggtgc cactcgcagt
61 cgtttgtgag cgttcgcagc gcaagttgca gcaatactta gtgttaaaca aataagccac
121 caaagcaaat actcgtacaa ttaagcccga gcagcccgag acacccgtcc agagacagag
181 acagccggat tcccttggag aaggagctgt tcgtggagag cagagacaga gacaaagaca
241 aagacaaaag acaagcggag aagcggagaa cagttcagcc aaaggccgaa aaagagtgcg
301 aacaatgtgc gccgcgctgc gtcaacgcaa tttgtggctg cggagcctct gggccatcgc
361 cgtagccatc ctggccactg gcactgtaca gggcgcctcg ccacgctggg agccgcaaat
421 agccgtactc tgcgaagccg gacaaatcta tcagccgcaa tatctgtccg aggagggacg
481 ctgggtgacg gacctcagca agaagacaac tggcgccaca tgtttgcgtg ataaaatgga
541 tttgcttgat tactgcaaga aggcctatcc caatcgagac attaccaaca ttgtggagtc
601 gtcgcactac cagaagatcg gcggctggtg ccgccagggt gctctgaacg cggccaagtg
661 caagggatcc caccgctgga ttaagccgtt ccgttgtctg ggaccattcc aatcggacgc
721 cttgctggtg ccagagggct gcctcttcga tcacatccac aatgcgtccc gctgctggcc
781 attcgtcaga tggaaccaga cgggcgccgc cgcctgccag gaacggggca tgcagatgcg
841 cagcttcgcc atgctgctgc cctgcggcat atcgctcttc tccggcgtgg aattcgtgtg
901 ctgccccaag cacttcaaga ccgatgagat tcatgtgaag aagaccgatc tgccggtgat
961 gcccccggca cagatcagca gtgccaacga tgagctgaac gacaacgagg aggatgacag
1021 caacgagtcc aactactcga aggacgccaa cgatgatgag ctggacgacg aggatgatct
1081 gatggccgac gacgaggagg acgaaatggt ggccgacgag gcggctgcgg ctggcggcac
1141 tgggtccagc tctggctcgg ctggcgatgc cagcagcggc tccctggatg acattaatgc
1201 ggaatatgat agcggcgagg atggcgacaa ctacgaggag gatggcgctg gctccgaggg
1261 cgacaatgac tccgatacct gggaccagaa cggcagctcc agtggcgcca agcccgtggg
1321 cctcaaggta cccattttgt cgatggcctc ctcgtccccg tccagcctgc ccgtgggtcc
1381 cgatggcagc tccggcaagg cacccctgaa gcccgaccag gttacacgca ttcccattta
1441 ctcgccggcc caggctgccg ccagagaggc tgccatcagt aatgccaatc gtatcaatcg
1501 acttgctgcc gcagctgccg ctgctgctgc cgccgctgct gctgctgccg ctactgggtc
1561 tggagctgca gctggagctg gggctgggac tggagctggg gcaccaccac cgtcgacggc
1621 acagcccacc tctgatccgt acttcaccca ctttgatccg cactacgagc accagagcta
1681 caaagtaagt cagaaagaag cccaacagcg ccttgaggaa tcgcatcgcg agaaggtcac
1741 ccgtgtgatg aaggactggt ccgatctgga ggagaagtac caggacatgc ggctggccga
1801 tcccaaggct gcccaatcat ttaagcagcg catgaccgcc cgcttccaga cttctgttca
1861 ggcactcgag gaagaaggca acgccgagaa gcaccagctg gccgccatgc accagcaacg
1921 cgtgctcgcc cacatcaacc agaggaagcg cgaggccatg acctgctaca cccaggccct
1981 taccgagcag ccacccaatg cccatcatgt ggagaagtgt ctgcagaagc tgctgcgggc
2041 cctgcacaag gaccgagccc atgccctggc acactaccga cacctgttga actccggcgg
2101 accgggcggc ctggaggcgg ctgcctcaga gcgaccccgc accctggagc gtctgatcga
2161 catcgatcgg gctgtcaacc agtcgatgac catgctaaag cgctacccag agctgtccgc
2221 caaaattgcc cagctgatga acgactacat tctggcactg cgcagcaagg acgacattcc
2281 cggctcgtcg ctcggcatga gcgaggaggc agaggcgggc atcctggaca agtaccgcat
2341 cgagatcgag cgcaaggtgg ccgagaagga gcgattgcgt ctggccgaga agcagcgtaa
2401 ggagcagcgt gccgccgagc gtgagaagct gcgcgaggaa aagctacgca tggaggccaa
2461 gaaggttgac gacatgctca agtcgcaggc ggccgagcag cagtcccaat ccccatccca
2521 gtcctcctcc cagtcccagc ccccagctca gtcgcaggca cagcagcaac agcaacagca
2581 acagcagcag caacagcagt cgcagcaaca agacaagagt attaacagca aggagctggg
2641 catcgacggg ggcctagtaa ccgctgccaa cctgaatctc gacaccacca agagcgagaa
2701 ggacctggcc gatgccgagt acgctgaggc cactgtcagc accaaggtgc agactgtgtt
2761 gccaacggtt gacgatgatg ccgttcaacg ggcggtggag gatgtggctg ctgccgtggc
2821 ccaccaagag gccgagccgc aggtgcagca cttcatgacc cacgatctgg gccaccgcga
2881 atcgagcttc tcgctgcgcc gcgaatttgc gcacgcgcac gcggccaagg agggacgcaa
2941 cgtctacttc actctctcct ttgccggcat cgccctcatg gcggctgtct ttgtgggtgt
3001 ggccgttgcc aagtggcgaa catcgcgctc gccgcacgcc cagggcttca ttgaggtgga
3061 tcagaacgtg accacacacc atcccatcgt acaggaggac aagatcgtgc ccaatatgca
3121 gatcaatggg tacgagaatc cgacctacaa gtactttgag gtgaaagagt aagcgtccca
3181 gcggcagcgg tagagcaagc gagcaggcga gagcacggca catcaacagc aaaaaacgca
3241 aaaagcagca gcagcaaaaa aaacaacaac aacaatttca aaatggaaaa aaacttaaac
3301 ataatatt