PREDICTED: Drosophila obscura amyloid-beta-like protein
LOCUS XM_022354669 3311 bp mRNA linear INV 14-MAY-2021
(LOC111066230), transcript variant X1, mRNA.
ACCESSION XM_022354669
VERSION XM_022354669.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022354669.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..3311
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..3311
/gene="LOC111066230"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 1 Protein, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 10 samples with support for all annotated
introns"
/db_xref="GeneID:111066230"
CDS 305..3175
/gene="LOC111066230"
/codon_start=1
/product="amyloid-beta-like protein isoform X1"
/protein_id="XP_022210361.2"
/db_xref="GeneID:111066230"
/translation="MCAALRQRNLWLRSLWAIAVAILATGTVQGASPRWEPQIAVLCE
AGQIYQPQYLSEEGRWVTDLSKKTTGATCLRDKMDLLDYCKKAYPNRDITNIVESSHY
QKIGGWCRQGALNAAKCKGSHRWIKPFRCLEGPFQSDALLVPEGCLFDHIHNASRCWP
FVRWNQTGAAACQERGMQMRSFAMLLPCGISLFSGVEFVCCPKHFKTDEIHVKKTDLP
VMPPAQISSANDELNDNEEDDSNESNYSKDANDDELDDEDDLMADDEEDEMVADEAAA
AGGTGSSSGSAGDASSGSLDDINAEYDSGEDGDNYEEDGAGSEGDNDSDTWDQNGSSS
GAKPVGLKVPILSMASSSPSSLPVGPDGSSGKAPLKPDQVTRIPIYSPAQAAAREAAI
SNANRINRLAAAAAAAAAAAAAAAATGSGAAAGAGAGTGAGAPPPSTAQPTSDPYFTH
FDPHYEHQSYKVSQKEAQQRLEESHREKVTRVMKDWSDLEEKYQDMRLADPKAAQSFK
QRMTARFQTSVQALEEEGNAEKHQLAAMHQQRVLAHINQRKREAMTCYTQALTEQPPN
AHHVEKCLQKLLRALHKDRAHALAHYRHLLNSGGPGGLEAAASERPRTLERLIDIDRA
VNQSMTMLKRYPELSAKIAQLMNDYILALRSKDDIPGSSLGMSEEAEAGILDKYRIEI
ERKVAEKERLRLAEKQRKEQRAAEREKLREEKLRMEAKKVDDMLKSQAAEQQSQSPSQ
SSSQSQPPAQSQAQQQQQQQQQQQQQSQQQDKSINSKELGIDGGLVTAANLNLDTTKS
EKDLADAEYAEATVSTKVQTVLPTVDDDAVQRAVEDVAAAVAHQEAEPQVQHFMTHDL
GHRESSFSLRREFAHAHAAKEGRNVYFTLSFAGIALMAAVFVGVAVAKWRTSRSPHAQ
GFIEVDQNVTTHHPIVQEDKIVPNMQINGYENPTYKYFEVKE"
misc_feature 389..910
/gene="LOC111066230"
/note="amyloid A4; Region: A4_EXTRA; smart00006"
/db_xref="CDD:128326"
misc_feature 1607..2200
/gene="LOC111066230"
/note="E2 domain of amyloid precursor protein; Region:
APP_E2; pfam12925"
/db_xref="CDD:463752"
misc_feature 2354..>2500
/gene="LOC111066230"
/note="DDRGK domain; Region: DDRGK; pfam09756"
/db_xref="CDD:370664"
misc_feature 3014..3163
/gene="LOC111066230"
/note="Beta-amyloid precursor protein C-terminus; Region:
APP_amyloid; pfam10515"
/db_xref="CDD:463129"
ORIGIN
1 gagccactgg gcgcccactg aaggcaacga gttgctcatg tggtcggtgc cactcgcagt
61 cgtttgtgag cgttcgcagc gcaagttgca gcaatactta gtgttaaaca aataagccac
121 caaagcaaat actcgtacaa ttaagcccga gcagcccgag acacccgtcc agagacagag
181 acagccggat tcccttggag aaggagctgt tcgtggagag cagagacaga gacaaagaca
241 aagacaaaag acaagcggag aagcggagaa cagttcagcc aaaggccgaa aaagagtgcg
301 aacaatgtgc gccgcgctgc gtcaacgcaa tttgtggctg cggagcctct gggccatcgc
361 cgtagccatc ctggccactg gcactgtaca gggcgcctcg ccacgctggg agccgcaaat
421 agccgtactc tgcgaagccg gacaaatcta tcagccgcaa tatctgtccg aggagggacg
481 ctgggtgacg gacctcagca agaagacaac tggcgccaca tgtttgcgtg ataaaatgga
541 tttgcttgat tactgcaaga aggcctatcc caatcgagac attaccaaca ttgtggagtc
601 gtcgcactac cagaagatcg gcggctggtg ccgccagggt gctctgaacg cggccaagtg
661 caagggatcc caccgctgga ttaagccgtt ccgttgtctg gaaggaccat tccaatcgga
721 cgccttgctg gtgccagagg gctgcctctt cgatcacatc cacaatgcgt cccgctgctg
781 gccattcgtc agatggaacc agacgggcgc cgccgcctgc caggaacggg gcatgcagat
841 gcgcagcttc gccatgctgc tgccctgcgg catatcgctc ttctccggcg tggaattcgt
901 gtgctgcccc aagcacttca agaccgatga gattcatgtg aagaagaccg atctgccggt
961 gatgcccccg gcacagatca gcagtgccaa cgatgagctg aacgacaacg aggaggatga
1021 cagcaacgag tccaactact cgaaggacgc caacgatgat gagctggacg acgaggatga
1081 tctgatggcc gacgacgagg aggacgaaat ggtggccgac gaggcggctg cggctggcgg
1141 cactgggtcc agctctggct cggctggcga tgccagcagc ggctccctgg atgacattaa
1201 tgcggaatat gatagcggcg aggatggcga caactacgag gaggatggcg ctggctccga
1261 gggcgacaat gactccgata cctgggacca gaacggcagc tccagtggcg ccaagcccgt
1321 gggcctcaag gtacccattt tgtcgatggc ctcctcgtcc ccgtccagcc tgcccgtggg
1381 tcccgatggc agctccggca aggcacccct gaagcccgac caggttacac gcattcccat
1441 ttactcgccg gcccaggctg ccgccagaga ggctgccatc agtaatgcca atcgtatcaa
1501 tcgacttgct gccgcagctg ccgctgctgc tgccgccgct gctgctgctg ccgctactgg
1561 gtctggagct gcagctggag ctggggctgg gactggagct ggggcaccac caccgtcgac
1621 ggcacagccc acctctgatc cgtacttcac ccactttgat ccgcactacg agcaccagag
1681 ctacaaagta agtcagaaag aagcccaaca gcgccttgag gaatcgcatc gcgagaaggt
1741 cacccgtgtg atgaaggact ggtccgatct ggaggagaag taccaggaca tgcggctggc
1801 cgatcccaag gctgcccaat catttaagca gcgcatgacc gcccgcttcc agacttctgt
1861 tcaggcactc gaggaagaag gcaacgccga gaagcaccag ctggccgcca tgcaccagca
1921 acgcgtgctc gcccacatca accagaggaa gcgcgaggcc atgacctgct acacccaggc
1981 ccttaccgag cagccaccca atgcccatca tgtggagaag tgtctgcaga agctgctgcg
2041 ggccctgcac aaggaccgag cccatgccct ggcacactac cgacacctgt tgaactccgg
2101 cggaccgggc ggcctggagg cggctgcctc agagcgaccc cgcaccctgg agcgtctgat
2161 cgacatcgat cgggctgtca accagtcgat gaccatgcta aagcgctacc cagagctgtc
2221 cgccaaaatt gcccagctga tgaacgacta cattctggca ctgcgcagca aggacgacat
2281 tcccggctcg tcgctcggca tgagcgagga ggcagaggcg ggcatcctgg acaagtaccg
2341 catcgagatc gagcgcaagg tggccgagaa ggagcgattg cgtctggccg agaagcagcg
2401 taaggagcag cgtgccgccg agcgtgagaa gctgcgcgag gaaaagctac gcatggaggc
2461 caagaaggtt gacgacatgc tcaagtcgca ggcggccgag cagcagtccc aatccccatc
2521 ccagtcctcc tcccagtccc agcccccagc tcagtcgcag gcacagcagc aacagcaaca
2581 gcaacagcag cagcaacagc agtcgcagca acaagacaag agtattaaca gcaaggagct
2641 gggcatcgac gggggcctag taaccgctgc caacctgaat ctcgacacca ccaagagcga
2701 gaaggacctg gccgatgccg agtacgctga ggccactgtc agcaccaagg tgcagactgt
2761 gttgccaacg gttgacgatg atgccgttca acgggcggtg gaggatgtgg ctgctgccgt
2821 ggcccaccaa gaggccgagc cgcaggtgca gcacttcatg acccacgatc tgggccaccg
2881 cgaatcgagc ttctcgctgc gccgcgaatt tgcgcacgcg cacgcggcca aggagggacg
2941 caacgtctac ttcactctct cctttgccgg catcgccctc atggcggctg tctttgtggg
3001 tgtggccgtt gccaagtggc gaacatcgcg ctcgccgcac gcccagggct tcattgaggt
3061 ggatcagaac gtgaccacac accatcccat cgtacaggag gacaagatcg tgcccaatat
3121 gcagatcaat gggtacgaga atccgaccta caagtacttt gaggtgaaag agtaagcgtc
3181 ccagcggcag cggtagagca agcgagcagg cgagagcacg gcacatcaac agcaaaaaac
3241 gcaaaaagca gcagcagcaa aaaaaacaac aacaacaatt tcaaaatgga aaaaaactta
3301 aacataatat t