PREDICTED: Drosophila obscura vesicle-associated membrane
LOCUS XM_022354658 2096 bp mRNA linear INV 14-MAY-2021
protein-associated protein B/C (LOC111066223), transcript variant
X2, mRNA.
ACCESSION XM_022354658
VERSION XM_022354658.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022354658.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..2096
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..2096
/gene="LOC111066223"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 3 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 17 samples with support for all annotated
introns"
/db_xref="GeneID:111066223"
CDS 543..1340
/gene="LOC111066223"
/codon_start=1
/product="vesicle-associated membrane protein-associated
protein B/C"
/protein_id="XP_022210350.2"
/db_xref="GeneID:111066223"
/translation="MSKPNFELPLTIDPEHELRFVGPFNRSVVTIMTLRNNAAVPLVF
KIKTTAPKRYCVRPNIGKILPFRSTQVEICLQPFMYDQQEKNKHKFMVQSVLAPMDAD
LTDLNKLWKELEPQQLMDAKLKCVFEMPSAEANAENPSGGAVGGGTGSAGGGTAGTNV
SSVIAEGIWADTKLSSDEKASNSPDATEHVDSSDELKALQESNSELRKENLHLKDQIT
RYRSSAVLKQPNEPYAPVLAEKQIPVFYIAIAIAAAILGLLLGKFLL"
misc_feature 567..887
/gene="LOC111066223"
/note="MSP (Major sperm protein) domain; Region:
Motile_Sperm; pfam00635"
/db_xref="CDD:459882"
ORIGIN
1 ttgacgggcg tttttctgct gactgaattt ttagcctctg catttgcata tgaaaatttt
61 actagattcg aagaaaagct aaactaacta agtgaaatag ccgagccaga atcaaagtga
121 catcaaatcg agtagaaaat tgcattgcac gaagcagggt tgatcatcgt tttttttttg
181 tacgcaacaa cacggaattt gtgtttggta tattctttat attctaaccg tgagcgagag
241 tgtgtgtgtg tgtggtcgca taaatttacc gatatttcgc ctggcctcgc tctctgacaa
301 atcggacgga gccagcagcg acaaacgagc aacgcgcagc ttatgaaaag tcgagaagag
361 aaaaaataaa acaatcggga aatctagtta aaaagccacc actacaacta caacgacaac
421 aaggtgaagg caaaaccagg acaagcagcg cgcaaaaacg cacaaaagaa ttaaggaaga
481 ataccgaaaa gcagacaaga agttgcaatt tttctacagt ggagtccata caaacagcag
541 ccatgagcaa accaaacttc gagcttccgc tgaccattga tccggagcat gagttgcgtt
601 ttgtgggtcc cttcaatcgg tccgtcgtca caataatgac ccttcggaat aatgcggcgg
661 tgccactggt cttcaagatc aagacaaccg caccaaagcg ctactgtgta cgtccaaaca
721 ttggcaagat tctgccattt cgctcgaccc aggtggaaat ctgcctgcag ccctttatgt
781 acgatcagca ggagaaaaac aagcacaagt tcatggtgca aagcgtcctc gcaccgatgg
841 atgctgatct gaccgatttg aataaattgt ggaaggagct ggagccgcag cagctaatgg
901 atgccaagct gaaatgcgta ttcgagatgc ccagtgccga ggcaaatgca gagaacccca
961 gcggcggagc cgtgggcggt ggaaccggca gcgccggcgg aggtactgcg ggtaccaatg
1021 tcagttccgt catcgccgag ggaatttggg cagacacgaa gctgtccagc gatgagaagg
1081 cctcaaattc gcccgatgcc actgagcatg tggactcgtc cgatgagtta aaggcgctgc
1141 aggagtccaa cagtgaacta cgaaaagaga atctacactt gaaggatcaa atcacacgct
1201 atcgcagctc agcggtcctc aagcagccga acgagcccta tgccccagtg ctggctgaga
1261 aacagattcc ggtcttttat attgcaattg caattgctgc ggccatactg ggtctcttac
1321 tgggcaaatt tttgctctga atgccataaa ttatccaaca tgcagcagaa tcactaacaa
1381 ctacagaact acagaaaaca aaaaacaaga aacaagaaag agaacagcat cagggagcag
1441 cagcaccatc aaaccgcaac aagacgcaat agcagcaata acaacgaacg aacgcagaag
1501 caacagaaaa aagcaaacga aagaggcggc gatactaaaa ccatcagaag gagcagtcga
1561 aaaggaaact agctctcgag gataaagaag aaggaggatg ataaaggagc tgcgctcgaa
1621 cagaaagtaa aggcttcgca gatgaagcag ttaaatctta aaatgattca aaaacaaaac
1681 cactgcaaaa agaaacaacc agtttaatcc aaaaagtgca ttgctcagat tttccattgc
1741 atttttttta tatttttttt gaactaatat tacaatattc tttacgataa ctattattat
1801 ttaacgtcta gagtcgtgga aactcgcatc tcttattttc tttctattat tcttcaatca
1861 gacatatttt taaaatctaa aacttatata ttaaaaaaaa caaacaaact ttcgacaaaa
1921 agcaaaaaca aacccaacat tcttaatgga tgcaaaccga tttcagtttt atttttaatt
1981 gagtttgtta tttgctttga caaaacttgg ataaatgtaa ttgttaaagc aaaaaactaa
2041 gaagaagcat aattaaggaa aaccacgagc aaaataaaat gcattacaaa aagtca