PREDICTED: Drosophila obscura vesicle-associated membrane
LOCUS XM_022354657 2166 bp mRNA linear INV 14-MAY-2021
protein-associated protein B/C (LOC111066223), transcript variant
X1, mRNA.
ACCESSION XM_022354657
VERSION XM_022354657.2
DBLINK BioProject: PRJNA728747
KEYWORDS RefSeq.
SOURCE Drosophila obscura
ORGANISM Drosophila obscura
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NW_024542752.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
On May 14, 2021 this sequence version replaced XM_022354657.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Drosophila obscura Annotation
Release 101
Annotation Version :: 101
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.6
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..2166
/organism="Drosophila obscura"
/mol_type="mRNA"
/isolate="BZ-5 IFL"
/db_xref="taxon:7282"
/chromosome="Unknown"
/sex="male"
/tissue_type="whole fly"
/dev_stage="Adult fly"
/geo_loc_name="Serbia: Babin Zub"
/collection_date="2017"
gene 1..2166
/gene="LOC111066223"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 3 Proteins, and 100% coverage of
the annotated genomic feature by RNAseq alignments,
including 17 samples with support for all annotated
introns"
/db_xref="GeneID:111066223"
CDS 613..1410
/gene="LOC111066223"
/codon_start=1
/product="vesicle-associated membrane protein-associated
protein B/C"
/protein_id="XP_022210349.2"
/db_xref="GeneID:111066223"
/translation="MSKPNFELPLTIDPEHELRFVGPFNRSVVTIMTLRNNAAVPLVF
KIKTTAPKRYCVRPNIGKILPFRSTQVEICLQPFMYDQQEKNKHKFMVQSVLAPMDAD
LTDLNKLWKELEPQQLMDAKLKCVFEMPSAEANAENPSGGAVGGGTGSAGGGTAGTNV
SSVIAEGIWADTKLSSDEKASNSPDATEHVDSSDELKALQESNSELRKENLHLKDQIT
RYRSSAVLKQPNEPYAPVLAEKQIPVFYIAIAIAAAILGLLLGKFLL"
misc_feature 637..957
/gene="LOC111066223"
/note="MSP (Major sperm protein) domain; Region:
Motile_Sperm; pfam00635"
/db_xref="CDD:459882"
ORIGIN
1 ttgacgggcg tttttctgct gactgaattt ttagcctctg catttgcata tgaaaatttt
61 actagattcg aagaaaagct aaactaacta agtgaaatag ccgagccaga atcaaagtga
121 catcaaatcg agtagaaaat tgcattgcac gaagcagggt tgatcatcgt tttttttttg
181 tacgcaacaa cacggaattt gtgtttggta tattctttat attctaaccg tgagcgagag
241 tgtgtgtgtg tgtggtcgca taaatttacc gatatttcgc ctggcctcgc tctctgacaa
301 atcggacgga gccagcagcg acaaacgagc aacgcgcagc ttatgaaaag tcgagaagag
361 aaaaaataaa acaatcggga aatctagtta aaaaggtagc ataaaaaggt ttttctcgga
421 aaatattagc agcccgggaa gaaacgcaag aagaacgaaa agaacccacc actacaacta
481 caacgacaac aaggtgaagg caaaaccagg acaagcagcg cgcaaaaacg cacaaaagaa
541 ttaaggaaga ataccgaaaa gcagacaaga agttgcaatt tttctacagt ggagtccata
601 caaacagcag ccatgagcaa accaaacttc gagcttccgc tgaccattga tccggagcat
661 gagttgcgtt ttgtgggtcc cttcaatcgg tccgtcgtca caataatgac ccttcggaat
721 aatgcggcgg tgccactggt cttcaagatc aagacaaccg caccaaagcg ctactgtgta
781 cgtccaaaca ttggcaagat tctgccattt cgctcgaccc aggtggaaat ctgcctgcag
841 ccctttatgt acgatcagca ggagaaaaac aagcacaagt tcatggtgca aagcgtcctc
901 gcaccgatgg atgctgatct gaccgatttg aataaattgt ggaaggagct ggagccgcag
961 cagctaatgg atgccaagct gaaatgcgta ttcgagatgc ccagtgccga ggcaaatgca
1021 gagaacccca gcggcggagc cgtgggcggt ggaaccggca gcgccggcgg aggtactgcg
1081 ggtaccaatg tcagttccgt catcgccgag ggaatttggg cagacacgaa gctgtccagc
1141 gatgagaagg cctcaaattc gcccgatgcc actgagcatg tggactcgtc cgatgagtta
1201 aaggcgctgc aggagtccaa cagtgaacta cgaaaagaga atctacactt gaaggatcaa
1261 atcacacgct atcgcagctc agcggtcctc aagcagccga acgagcccta tgccccagtg
1321 ctggctgaga aacagattcc ggtcttttat attgcaattg caattgctgc ggccatactg
1381 ggtctcttac tgggcaaatt tttgctctga atgccataaa ttatccaaca tgcagcagaa
1441 tcactaacaa ctacagaact acagaaaaca aaaaacaaga aacaagaaag agaacagcat
1501 cagggagcag cagcaccatc aaaccgcaac aagacgcaat agcagcaata acaacgaacg
1561 aacgcagaag caacagaaaa aagcaaacga aagaggcggc gatactaaaa ccatcagaag
1621 gagcagtcga aaaggaaact agctctcgag gataaagaag aaggaggatg ataaaggagc
1681 tgcgctcgaa cagaaagtaa aggcttcgca gatgaagcag ttaaatctta aaatgattca
1741 aaaacaaaac cactgcaaaa agaaacaacc agtttaatcc aaaaagtgca ttgctcagat
1801 tttccattgc atttttttta tatttttttt gaactaatat tacaatattc tttacgataa
1861 ctattattat ttaacgtcta gagtcgtgga aactcgcatc tcttattttc tttctattat
1921 tcttcaatca gacatatttt taaaatctaa aacttatata ttaaaaaaaa caaacaaact
1981 ttcgacaaaa agcaaaaaca aacccaacat tcttaatgga tgcaaaccga tttcagtttt
2041 atttttaatt gagtttgtta tttgctttga caaaacttgg ataaatgtaa ttgttaaagc
2101 aaaaaactaa gaagaagcat aattaaggaa aaccacgagc aaaataaaat gcattacaaa
2161 aagtca