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LOCUS XM_019475471 252 bp mRNA linear PLN 18-APR-2022 (CAALFM_C604250WA), partial mRNA. ACCESSION XM_019475471 VERSION XM_019475471.1 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 252) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 252) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 252) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 252) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 252) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 252) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..252 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>252 /locus_tag="CAALFM_C604250WA" /db_xref="GeneID:30515345" CDS 1..252 /locus_tag="CAALFM_C604250WA" /note="Ortholog(s) have cytochrome-c oxidase activity, role in mitochondrial respiratory chain complex IV assembly and cytosol, mitochondrial intermembrane space, mitochondrial respiratory chain complex IV, nucleus localization" /codon_start=1 /transl_table=12 /product="cytochrome c oxidase subunit VIb" /protein_id="XP_019331016.1" /db_xref="CGD:CAL0000174812" /db_xref="GeneID:30515345" /translation="MPVDPATFKFETPQFDPRFPNQNQSKHCAQAYVDYHKCVNVKGE EFEPCKIFFKTFTSLCPLDWVEKWDDQRAAGKFPVNMDA" misc_feature 19..234 /locus_tag="CAALFM_C604250WA" /note="Cytochrome c oxidase subunit VIb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of...; Region: Cyt_c_Oxidase_VIb; cd00926" /db_xref="CDD:238466" misc_feature order(28..39,64..75,160..162,169..189) /locus_tag="CAALFM_C604250WA" /note="Subunit VIb/II interface [polypeptide binding]; other site" /db_xref="CDD:238466" misc_feature 64..66 /locus_tag="CAALFM_C604250WA" /note="Subunit VIb/I interface [polypeptide binding]; other site" /db_xref="CDD:238466" misc_feature order(76..78,85..87,232..234) /locus_tag="CAALFM_C604250WA" /note="Subunit VIb/III interface [polypeptide binding]; other site" /db_xref="CDD:238466" misc_feature order(124..126,130..147) /locus_tag="CAALFM_C604250WA" /note="Subunit VIb/VIb interface [polypeptide binding]; other site" /db_xref="CDD:238466" misc_feature order(211..213,220..228) /locus_tag="CAALFM_C604250WA" /note="Subunit VIb/VIa interface [polypeptide binding]; other site" /db_xref="CDD:238466" ORIGIN 1 atgccagtcg atccagctac ttttaaattc gaaactccac aatttgaccc aagattccca 61 aaccaaaacc aatccaaaca ttgtgctcaa gcctacgttg attaccacaa atgtgtcaat 121 gtgaaaggtg aagaatttga accatgcaaa atctttttca aaactttcac ttcattatgt 181 cctttggatt gggtcgaaaa atgggatgat caaagagctg ctggtaaatt cccagtcaac 241 atggacgctt ag