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LOCUS XM_019475464 1839 bp mRNA linear PLN 18-APR-2022 partial mRNA. ACCESSION XM_019475464 VERSION XM_019475464.1 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 1839) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 1839) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 1839) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 1839) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 1839) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 1839) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1839 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>1839 /locus_tag="CAALFM_C602350CA" /db_xref="GeneID:3645881" CDS 1..1839 /locus_tag="CAALFM_C602350CA" /note="Putative pseudouridine synthase; predicted role in snRNA pseudouridine synthesis, tRNA pseudouridine synthesis; Spider biofilm induced" /codon_start=1 /transl_table=12 /product="pseudouridine synthase" /protein_id="XP_019331009.1" /db_xref="CGD:CAL0000183350" /db_xref="GeneID:3645881" /translation="MGDKFSVPTNQSKERQPIVKKKKKKKRTNIYSYILIISFPVIDQ FQMSESLNIQELTDNSSIIPIPTESTDVQDVTSVSNKDTTTTTTTTTTTTESTTRVRK SSPSPSANENDKKRLKKEFQPRQKIEYTPLVDENGQPIPKAPRKPKRKVAVMLGYCGT GYNGMQVQNDPNVKTIEKDIYDAMATAGAISAENAVDLKKSGFQRAARTDKGVHAAGN VISLKMIIEDPEIINKINDLLPKQIRIWGIQRTTKGFDCRKCCSSRIYEYLLPTFSLL PPKPKSVLSELVKEKKLENPDLFEDDQEGIDWWENVKSKILASGITQEQIDSITSSYD EQQQQQQQQQQQQADEEERDISELSFTKLIKQIKTIENQSRRSYRISSSRLQHFREVM KQYEGTHNFHNFTVGKPFKDTSANRFMIKTIVSDPFVIEGTEWISIKIHGQSFMLHQI RKMIAMAALVVRLSLPCGIINNFFQSTKINIPKAPALGLLLENPVFDGYNIKLTKSDY EPIDFTKFDKEMNEFKMKYIYDKIYAEESKENIFYGFFGYIDAYRGNKNEDGEPIQNG ASIFDFLFNYTERVENTKNKDAKNTSKTEESKPEESKPEESKSEQS" misc_feature 457..1488 /locus_tag="CAALFM_C602350CA" /note="Pseudouridine synthase, PUS1/ PUS2 like; Region: PseudoU_synth_PUS1_PUS2; cd02568" /db_xref="CDD:211335" misc_feature order(619..630,1351..1353) /locus_tag="CAALFM_C602350CA" /note="probable active site [active]" /db_xref="CDD:211335" ORIGIN 1 atgggtgata aattttcagt cccaaccaac caaagcaaag agagacagcc catcgtgaaa 61 aaaaaaaaaa aaaaaaaaag aaccaacata tattcatata tcttgataat atctttccca 121 gttatagatc aatttcaaat gtctgaatct ttgaatattc aagaattaac tgataattct 181 tcaattatac cgatcccaac cgaatcaact gatgttcaag acgttacttc tgtatctaac 241 aaagatacta ccactaccac taccactacc accaccacaa cagaatcaac gactcgtgtc 301 agaaaatcat caccatcacc atcagctaat gaaaatgaca agaaacgtct taaaaaggaa 361 tttcaaccaa gacaaaaaat cgaatatact ccattagtcg atgaaaatgg tcaaccaatc 421 ccaaaagcac caagaaagcc aaaacgtaaa gttgccgtta tgttaggata ttgtggtact 481 ggatataatg ggatgcaagt acaaaatgat cctaatgtta aaaccattga aaaagatatt 541 tatgatgcta tggccactgc cggagccata tcggctgaaa atgctgttga tttaaaaaaa 601 tcgggatttc aaagagcagc aagaactgat aaaggagtac atgctgcagg taatgtaatt 661 tcattaaaaa tgataattga agatccagaa attatcaata aaattaatga tttattacct 721 aaacaaatta gaatttgggg aattcaaaga accacaaagg ggtttgattg tagaaaatgt 781 tgttcttcaa gaatttatga atatttatta ccgacattta gtttattacc accaaaacca 841 aaatcagtat taagtgaatt agttaaagaa aaaaaattag aaaatcccga tttatttgaa 901 gatgatcaag aaggtattga ttggtgggaa aatgttaaat caaaaatttt agcttccggt 961 attactcaag aacaaattga ttcaattact agttcatacg atgaacaaca acaacaacaa 1021 caacaacagc agcaacaaca agctgacgaa gaagaaagag atatttctga attatcattt 1081 actaaattga ttaaacaaat taaaaccatt gaaaatcaaa gtagaagatc atatagaatt 1141 tcatcatcac gtttacaaca tttccgtgaa gttatgaaac aatatgaagg aactcataat 1201 ttccataatt tcaccgtggg taaacctttt aaagatacta gtgccaatag atttatgatt 1261 aaaactattg tatcagatcc atttgttatt gaaggaactg aatggatatc gattaaaatt 1321 catggtcaat catttatgtt acatcaaatt agaaaaatga ttgctatggc agcattagta 1381 gttcgattaa gtttaccttg tggaataatt aataattttt tccaatcaac aaaaattaat 1441 attcctaaag ctcccgcttt gggtttactt ttagaaaatc cagtatttga tggatataat 1501 attaaattaa ctaaatcaga ttatgaacca attgatttca ctaaatttga taaagaaatg 1561 aatgaattta aaatgaaata tatttatgat aagatttatg ctgaagaaag taaagaaaat 1621 attttttatg gatttttcgg ttatattgat gcttatagag gtaataaaaa tgaagatggt 1681 gaaccaattc aaaatggtgc tagtattttt gatttcttat ttaattatac tgaaagagtt 1741 gaaaatacca agaataaaga tgcaaagaac acctcaaaga ctgaagagtc aaagcctgaa 1801 gaatcaaagc ctgaagagtc aaaatctgaa caatcataa