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LOCUS XM_017160821 6277 bp mRNA linear INV 09-DEC-2024 1 (shtd), mRNA. ACCESSION XM_017160821 VERSION XM_017160821.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017160821.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6277 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6277 /gene="shtd" /note="anaphase promoting complex subunit 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108070371" CDS 109..6201 /gene="shtd" /codon_start=1 /product="anaphase-promoting complex subunit 1" /protein_id="XP_017016310.2" /db_xref="GeneID:108070371" /translation="MIAVAEPPLEFVPRGRQSSAEHPGPHDQPLARHQLPTTEHLLLQ RLQNVNISSGGLEDSPSSGGQESWTIRELYDDYEAAEERAARRRQLIERTKRCGPKAA AATQLTSLPQSLLHPQVERGREEPMCDYVVNNEEELYVHRNTVVWTQGFNDDDDDHEN GVYKRMCFTSDSPVRFACFLNRSFVRGRLAQLKAAVQSQDDQLTAICVMDQDALRVYC NDGEDFLANLDFPVSQVWQTKHGLLLEKDSSNALISHLSIPMPRLFSMSHPLHEACPV VLKTATSSTGYMTEPEFSVVFTTEDSDLVLLYDAKFFKHFVARLRKVTPEEVNYVGQQ QQELSQTLLGPRSQMGGNSYSFSSTKQTGATPKAGNASFLGRNNTTAGLGNLSKFGLS QSQSFSGVLGQSNRASLGTPLSQLQSSISQQSMSVKDMRKMTHVKPAKPIEPEMCLEH IWTENTYGTQREFCEMATRAFIHTDLVGQTFLCYLLARSCRLQMVRLTGYGSSEVQLS TLAATLAAKDAVGLSRMHMIAVLDPSGSLILYTGTVLISKVHITPLLAPMATTTAATA VKTPAANHSGSSSFVEVRRSSLLPTKAPADLAAFDEELHMLSPIAPQAVSYTQRQAHN VCKSLRDPAGNRLTLVYATGRMLRIALPLLNDTRLLTRCVATLRQVLSPAQFLHFVIR WYSARNPPGSRDYSIEQEWQLFRCTLLALMGLTAAPDVEAGEGYDGRCATPPLNAHFG GVGTANATGSGDGSNCSSNSTLGAQDEPKKRRKYNDCEDYTDDDWEFLLLQTTLAPCG ADGHSYSVNISAPLFQMIPAIFFSLHLLYEDLKLDAVFYAALPYLATFLHQLAIDMQL DSYVLHYILDFPELCNRTGRQSLLGAEHGAMMLHQELLRVPAPSVFAQLEHIVVGEEE VMPYSFVECVNERSRNLLQLVSLVVHGQERLKHWWQLLEIPEAVQSNYPRRAKRSITA DAPRCHQMLELLLAMRLTRRDIERFPAAVHLIVAEALEEARLSPPMGCSMATYELILR PELAAHAQLPFLDTTTSTSTGQPHCGRVYKEDSLSARCPPSGGAESAESTEQLRHDDM DNMDTKLLRLRFPDDMRVEEVRRLLNSSEPVVIEVQQAPGTSDHEFIEEQEKQLFALC SRTMTLPLGRGMFTLRTMMPRPSDSLAMPKLCLVGREPLKGTTIEMQQIEFPANMQMW PSFHNGVATGLKISPQAQDIDSNWIVYNKPKTQANNSLEHAGFLMALGLNGHLKTLSF MSVYKYLVKCDEMTNVGLLLGISAAHRGTMDTKTTKLLSVHLEALLPATAMELDIPQS TQVAALMGIGLLYQGSAKRHIAEVLLQEIGRPPGPEMENSVERESYAMTAGLSLGLVT LGQGESPAGLRDLQLPDTLHYYMVGGVKRPISGSQKEKYRLASFQVREGDSVNIDVTA PGATLALGLMFFGSGNAAIAEWMQPPDSRYLLDMVRPDFLLLRTIARGLILWQDIRPD SEWFHAQFPASLRVHLRLPTRDEGSNGEDGDVDYEAITQAYCNIMAGAAFCIGLKYAG TEDMVAFATLRAVIKEFLGYPGTPMGECAGRTTVESCLMVLLISISLVFAGSGNCEIL RIIRYLRSRVGPQYPHITYGSHMAIHMSLGLLFLGAGRFTIAKTPESIAALVCAFFPK FPIHSNDNRYHLQALRHLYVLAVEPRLFLPRDIDTHQLCLANISVLEVGATELRRLPI APCILPVLSSLQRVVVDDENYWPVCFDRSRNWHQLEKALEMSAPIDIKKRTGCLSHLE DPDRLKSMLAQTLTMEQSICWQIDMNDLQQFASERMIKQFLSRCLATKGTDLSYPELV KRHQMMLLFYNAVVKDRMHLLPVYLTLYDHVTKSMLNNIDVWQLKLIDAYLSRSQESE HPLISVELIQMLQELFKQAMEDSTRELCLPLREFLSRKRLEPSYVTTVSGPDLQRAFC VINYYNLLPNMLSGVDLSAGTVNYMRILYEFRQLNLGAHTIFGLLKILQSLQTTEVVT LDEAALLAYTMATQ" misc_feature 2077..3210 /gene="shtd" /note="Anaphase-promoting complex subunit 1 middle domain; Region: Apc1_MidN; pfam20518" /db_xref="CDD:466667" misc_feature <5671..5892 /gene="shtd" /note="Anaphase-promoting complex sub unit 1 C-terminal domain; Region: APC1_C; pfam18122" /db_xref="CDD:465659" polyA_site 6277 /gene="shtd" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 catcgatatc cctcgaacgg ttatcgagcc gagctctacg cgggacgtat aatttgtaat 61 taataaatcc gctcaatcgc aactctggat gcacctggcg atgcggacat gatcgccgtc 121 gcagaaccgc cgctggagtt tgtgccgcgc ggccgtcagt cgtccgcgga gcacccggga 181 ccgcatgacc agccattggc gcgtcaccag ctgcccacca cggagcacct gctgctgcag 241 cggctccaga atgtgaatat ctcctccggc ggcctcgagg attcgccctc gtcgggtggc 301 caggagtcgt ggacgatacg ggagctgtac gatgactacg aggccgccga ggagcgggcc 361 gcccggcggc gccagctgat cgaaaggacc aagcgatgcg gtcccaaggc ggcggcggcc 421 acgcagctca cctcgctgcc ccagagcctc ctgcatccgc aggtggaacg cggacgcgag 481 gagcccatgt gcgactatgt ggtgaacaac gaggaggagc tctatgtgca ccgcaacacc 541 gtcgtttgga cgcagggctt caacgatgac gatgatgatc acgagaatgg ggtgtacaag 601 cgcatgtgct tcaccagcga ctcgccggtg cgcttcgcct gcttcctcaa tcgcagcttc 661 gtgaggggac gactggcgca gcttaaggcg gccgttcagt cgcaggatga ccagctgacc 721 gccatctgtg tgatggatca ggatgcactg cgtgtgtact gcaatgatgg cgaggatttc 781 ctggccaatc tggactttcc cgtctcgcag gtgtggcaga ccaagcatgg tttgctgctg 841 gaaaaggatt ccagcaatgc cttgatctct catctttcga ttcccatgcc gcgactcttc 901 tccatgtcgc atccgctgca cgaagcctgc ccggtggtcc tgaaaaccgc caccagctcc 961 acgggctaca tgaccgaacc ggaatttagc gtggtcttca ccaccgagga ttcggatttg 1021 gtgctgctgt acgacgccaa gttcttcaag catttcgtgg cccggctgcg caaggtgacg 1081 cccgaggagg tcaactatgt gggccagcag cagcaggagc tcagccagac gctcctgggt 1141 ccgcgctccc agatgggcgg caatagctac agcttcagtt ccaccaagca gacgggggcc 1201 acgccaaagg cgggaaatgc ctcgtttctg ggcaggaata acaccaccgc cggcctgggc 1261 aacctctcca agttcggact cagccagtcg cagtctttca gcggagttct gggccaatcc 1321 aatcgcgctt cattaggcac tccgctaagc caactgcaga gcagcattag ccagcagtcg 1381 atgtcggtga aggacatgcg caaaatgacg catgtgaagc cggccaagcc cattgagccg 1441 gagatgtgtt tggagcacat ttggaccgag aacacctatg gaacgcagcg ggaattctgt 1501 gaaatggcca cccgggcctt tatccacacg gatctcgtgg gtcagacctt tttgtgctac 1561 ctgctggccc gctcctgccg cctccagatg gtcaggctca cgggctacgg cagcagcgag 1621 gtgcagctct ctactttggc cgccacgctg gccgccaagg atgcagtggg tctctcacgc 1681 atgcacatga tcgccgttct cgatccgagt ggtagtttga tcttgtacac cggcaccgtg 1741 ctgatttcca aggtgcacat tacaccgctg ctggctccaa tggctactac tactgctgct 1801 actgctgtga aaacccctgc tgcaaatcac tctggcagca gctcctttgt ggaggtgcgt 1861 cgcagcagtt tgctgcccac caaagcaccc gcggatttgg ccgccttcga cgaggagctg 1921 cacatgctgt cgcccatcgc tccgcaggcg gtttcctata cgcaaaggca ggcgcataat 1981 gtgtgcaaat ctctgcgaga tccggcgggc aatcgattga ctctagttta tgccaccggc 2041 aggatgctga ggattgcctt gcctttgcta aacgatacgc gattgctgac ccgttgcgtg 2101 gccactttgc ggcaggtttt gagccccgca cagtttctgc actttgtgat ccgctggtac 2161 agcgccagga atccgcccgg ttcgagggac tactcgatag agcaggaatg gcagctcttt 2221 cgctgcactc tgctggcttt gatgggcttg accgctgctc cggatgtgga ggcgggcgag 2281 ggatacgatg gcaggtgtgc cacgccgcct ttaaatgctc atttcggtgg agtaggaaca 2341 gcgaatgcca ctggttccgg cgacggatcc aattgcagct ccaattccac gctgggcgcc 2401 caggatgagc cgaagaagcg gcggaagtac aacgattgcg aggactacac cgacgacgac 2461 tgggagttcc tgctgctgca gacgacactc gcgccctgcg gtgccgatgg ccatagctac 2521 agcgtgaaca tcagtgcgcc actgttccaa atgatacccg ccatcttctt tagcctgcat 2581 ctgctgtacg aggatctcaa gctggacgct gtcttctatg cggcgcttcc ttacctggca 2641 acgttccttc accagctggc cattgacatg cagctggaca gctacgtgct gcactacatc 2701 ctcgacttcc cggagctgtg caatcgcacg ggccgccagt cgctgctggg cgccgagcac 2761 ggagcgatga tgctgcacca ggagctcctc cgcgtgccgg cacccagtgt gtttgcccaa 2821 ctggagcaca tagtcgtcgg cgaggaggag gtgatgccct acagttttgt ggagtgtgta 2881 aacgaaagga gtcgcaattt gctgcagctc gtttcgctgg tggttcatgg acaggagcgt 2941 ttgaagcact ggtggcagct cctcgagatt cccgaggccg ttcagtccaa ctatccgcgg 3001 cgtgcgaagc gcagcattac ggcggatgct ccacgctgtc accagatgct cgagttgctc 3061 ctggccatgc ggttgactcg ccgggatatt gaacgctttc ccgccgccgt tcatttgatt 3121 gtggccgagg ctctggagga ggctcgcctg tcgccgccca tgggctgcag catggccacc 3181 tatgagttga ttttacgtcc cgaactggct gcccatgcgc agctaccttt cctggacacg 3241 acgacgtcga cgagcacggg gcaaccgcat tgcgggcggg tctacaagga ggattccctg 3301 tcggccagat gcccgccgag cggaggagcg gaatcagcgg agtcaacgga gcagttgcga 3361 cacgacgaca tggataatat ggacacgaag ctgctgcgcc tgcgcttccc cgacgacatg 3421 cgcgtggagg aggtgcgccg gctgctgaac agctcggaac cggtggtcat tgaggtgcag 3481 caggcgccgg gcaccagcga ccatgagttt atagaggagc aggagaagca attgtttgct 3541 ctatgctctc gtacgatgac tttacctttg ggacgtggaa tgttcaccct acgcacaatg 3601 atgccgcgac ccagcgatag tctggccatg cccaagcttt gcctggtggg cagggagccg 3661 ctgaaaggaa ccaccattga gatgcagcag attgaattcc cggcgaacat gcaaatgtgg 3721 ccatcgtttc acaatggcgt ggccactggc ttgaagatct caccgcaggc gcaggacatt 3781 gactccaatt ggatagttta caataagccc aagacgcagg ctaataattc cctggagcac 3841 gctggttttc tcatggcttt gggtctaaat ggtcacctga aaacgctctc cttcatgagt 3901 gtctacaaat atctggtgaa gtgcgatgag atgaccaatg tgggtctcct gctgggcatt 3961 tcggcggccc atcgcggcac catggatacg aaaaccacga agttattaag cgtccatttg 4021 gaggctctac tacccgcaac cgccatggag ctagacatac cgcagagcac acaggtggcc 4081 gccttgatgg gcattggttt gctgtatcag ggctccgcca agcgtcacat tgccgaggtg 4141 ctgctgcagg agattgggag accgccggga cccgagatgg agaacagcgt ggagcgcgaa 4201 tcgtatgcca tgaccgcggg actctcgctg ggattggtca ccttgggtca gggtgaatct 4261 cccgctgggc tgagggatct gcagctgccg gacacgctgc actattacat ggtcggcggg 4321 gtgaagcgac cgattagcgg ctcgcaaaag gagaaatacc ggctggcctc gttccaagtg 4381 cgcgaaggcg atagcgttaa tatcgatgtc actgcaccgg gcgccacttt ggccttggga 4441 ctgatgttct tcggttcggg caatgcggcg attgccgagt ggatgcagcc gccggactcg 4501 cgctatctcc tcgatatggt gcgacccgat ttcctcctgc tgcgcacgat tgccaggggc 4561 ctcatcctct ggcaagacat ccggccggac agcgagtggt tccacgccca gtttcccgcc 4621 agtctgcgcg tccacctgcg actcccgacg cgcgatgagg gctcaaacgg tgaggacggc 4681 gacgttgact acgaggccat cacgcaagcc tactgcaaca tcatggccgg agcggccttt 4741 tgcattggcc tcaagtacgc cggcaccgag gacatggtgg ccttcgccac gctgcgtgcg 4801 gtaatcaagg aattcctcgg ctacccgggc acaccgatgg gcgagtgtgc cggccgcacc 4861 accgtggaga gctgcctgat ggtcctgctc atctcgattt ctctcgtttt tgccggttcc 4921 ggcaactgcg agatcctgcg catcattcgc tatttaagat cacgcgtggg tccgcagtat 4981 ccgcacatca cctacggctc ccacatggcc atacacatgt cgctggggct gctgttcctc 5041 ggcgccggtc gcttcaccat cgccaagacg ccggaatcga tagcggcgct ggtctgcgcc 5101 ttctttccca agtttcccat acacagcaac gacaatcgtt accatctgca ggcgctgcga 5161 catctctatg tgctcgccgt ggagccgcgc ctctttctgc cccgcgacat cgatacccat 5221 cagctgtgtt tggccaacat ttcggtgctg gaagtgggcg ccaccgagct gcgccgcctg 5281 cccatcgctc cctgcatcct gccggtgctg agcagcctgc agcgcgtggt ggtggacgat 5341 gagaactatt ggccggtgtg cttcgatcgc tcgcgcaact ggcatcagtt ggagaaggcg 5401 ctcgagatga gtgcaccgat tgatatcaag aagcgaactg ggtgtttgtc tcatttggag 5461 gaccccgacc ggctgaagag catgctggcc cagactttga ccatggagca gagcatctgc 5521 tggcagatcg acatgaacga cctgcagcag tttgccagcg agcggatgat aaagcagttc 5581 ctcagtcgct gtttggccac caagggcacg gatttgagct acccggagct ggtgaagcgc 5641 caccagatga tgctgctctt ctacaatgcc gtggtcaagg atcggatgca tttgctgccc 5701 gtttacctaa cgctatacga tcacgtgacc aagtccatgc tgaacaacat cgatgtgtgg 5761 cagctaaagc tgatcgatgc gtatttgagt cgcagccagg agtcggagca tccactaatc 5821 tccgtggagc tcatccagat gctgcaggag ctcttcaagc aggccatgga ggactccacc 5881 cgggagttat gcctgccgct gcgcgagttt ctcagccgca agcgtctgga gccgagctat 5941 gtgaccactg tgagtggacc ggatttgcag cgagccttct gtgtgatcaa ttactataat 6001 ttgctgccga atatgttgag tggcgtggat ttgagtgcgg gaacggtgaa ctatatgcgc 6061 atactgtacg aattccggca gctgaatctc ggggcgcaca ccatcttcgg gctgctcaag 6121 atcctccagt cgctccagac caccgaggtg gtaactttgg atgaggcggc gctattggcc 6181 tacaccatgg ccacccaatg atccccgttg gacattatac tcttgtgcga agcctagaat 6241 acatatatat gttgtaatat atccgcttga aactcga