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LOCUS XM_017160787 7061 bp mRNA linear INV 09-DEC-2024 aspartate transcarbamylase, and dihydroorotase rudimentary (r), mRNA. ACCESSION XM_017160787 VERSION XM_017160787.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017160787.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7061 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7061 /gene="r" /note="carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase rudimentary; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 561 Proteins" /db_xref="GeneID:108070349" CDS 273..6944 /gene="r" /codon_start=1 /product="multifunctional protein r" /protein_id="XP_017016276.2" /db_xref="GeneID:108070349" /translation="MMPPADCYLALEDGTVMPGHSFGHVPADKSGAGGVGGEVVFQTG MVGYTEALTDRSYSGQILVLTYPLIGNYGVPSPDEQDEHGLPLHFEWMQGVVQATALV VGEVADAAWHWRTWKTLPKWLKQHKVPGISGIDTRALTKKLREQGSLLGRIVYEKPPV EGLPKSSFLDPNTRNLAKECSVQERRVYGDPNGKGPRIAILDCGLKLNQLRCLLQRGA SVILLPWNARLEEEQFDALFLSNGPGNPESCDEIVQQVRKVIEEGVKPVFGICLGHQL LAKAIGCSTYKMKYGNRGHNLPCLHRATGRCLMTSQNHGYAVDLEQLPAGWSELFVNA NDGTNEGIVHASKPYFSVQFHPEHHAGPQDTEFLFDVFLESISQRDLSIPQLIEQRLR TLNPTKGIPEKPRKVLILGSGGLSIGQAGEFDYSGSQAIKAMRESNIQTVLINPNIAT VQTSKGMADKCYFLPLTAHYVEQVIKSERPNGVLLTFGGQTALNCGVELERAGIFSKY NVRILGTPIQSIIETEDRKLFAERVNEIGEQVAPSEAVYSVAEALDAAGRLGYPVMAR AAFSLGGLGSGFANNEQELQSLAQQALAHSSQLIVDKSLKGWKEVEYEVVRDAYDNCI TVCNMENFDPLGIHTGESIVVAPSQTLSDREYQMLRSTALKVIRHFGVVGECNIQYAL NPHSEQYYIIEVNARLSRSSALASKATGYPLAYVAAKLALGLPLPEIKNSVTGNTTAC FEPSLDYCVVKIPRWDLAKFVRVSKHIGSSMKSVGEVMAIGRNFEEAFQKALRMVDSD VLGFEPDVVALDQEQLSEPTDRRPFVLAAALESGMCVQGLHDLTKIDCWFLHKLERII ELRTLLSTRGIRIDRELLLQAKRYGFSDKQIAKATKSSELAVRHQRQEFGIRPHVKQI DTVAGEWPASTNYLYNTYNGSEHDVDFPGGHTIVVGSGVYRIGSSVEFDWCAVGCLRE LRKLQRPTIMINYNPETVSTDYDMCDRLYFEEISFEVVMDIYELENSEGIILSMGGQL PNNIAMDLHRQQAKVLGTSPESIDCAENRFKFSRMLDRKGILQPRWKELTNLQSAIDF CEEVGYPCLVRPSYVLSGAAMNVAYSNQDLETYLNAASEVSREHPVVISKFLTEAKEI DVDAVAADGRILCMAVSEHVENAGVHSGDATLVTPPQDLNAETLKAIKQITCDLASVL DVTGPFNMQLIAKNNELKVIECNVRVSRSFPFVSKTLDHDFVATATRAIVGLDVEPLD VLHGVGKVGVKVPQFSFSRLAGADVQLGVEMASTGEVACFGDNRYEAYLKAMMSTGFQ IPKNAVLLSIGSFKHKMELLPSIRDLAKMGYKLYASMGTGDFYAEHGVDVESVQWTFD KTTPDDINGELRHLAEVLANKQFDLVINLPMSGGGARRVSSFMTHGYRTRRLAVDYSI PLVTDVKCTKLLVESMRLNGGKPAMKTHTDCMTSRRIVKLPGFIDVHVHLREPGATHK EDFASGTAAALAGGVTLVCAMPNTNPSIVDRETFTQFQELAKAGSRCDYALYVGASDA NWSQVNELASQACGLKMYLNDTFGTLKLSDMTAWQRHLTHWPKRAPIVCHAEKQSTAA IILMAHLLERPVHICHVARKEEIQLIRAAKEKGIKVTCEVCPHHLFLSTKDVERVGGA GMSEVRPLLCSPEDQEALWENMEYIDVFATDHAPHTLAEKRSERPPPGFPGVETILPL LLQAVAEGRLTLEDIKRKFHRNPRSIFNLPEQAHTYVEVDLDEEWTITGSELKSKSGW TPFEGTKVKGRVHRVVLRGEVAFIDGQVLVQPGFGQNVRSKTGQVGAQGQLEQPDNLL PSDSDANDTFARLLTASSTTSSSSTKVHFVDGANFVRPISPAPRVRLDSTSNTALREY LQRSSSPNPVAHSLVGKHILAVDMFSKEHLNDIFNLAQLLKSRVTKDRPVDELLRGKI MASVFYEVSTRTQCSFAAAMLRLGGRVISMDQITSSVKKGESLEDSIKVMGSYADVMV LRHPTPGAVARAATFSRKPLINAGDGVGEHPTQALLDIFTIREEIGTVNGLTITLAGD LKNGRTVHSLARLLTLYNVTLQYVAPHGLQMPDEITQFVHQRGIKQLFASSFEEVLAS TDVLYMTRIQRERFDSESAYKECCGHLVVTPELMTLAKKRSIVLHPLPRLDEISRDFD SDPRAAYFRQAEYGMYVRMALLAMVVGGRNTAL" misc_feature 294..1400 /gene="r" /note="carbamoyl-phosphate synthase, small subunit; Region: CPSaseIIsmall; TIGR01368" /db_xref="CDD:273580" misc_feature 1476..4628 /gene="r" /note="carbamoyl-phosphate synthase, large subunit; Region: CPSaseII_lrg; TIGR01369" /db_xref="CDD:273581" misc_feature 4686..5729 /gene="r" /note="The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the...; Region: CAD_DHOase; cd01316" /db_xref="CDD:238641" misc_feature order(4719..4721,4725..4727,4974..4976,5076..5078, 5148..5150,5367..5369) /gene="r" /note="active site" /db_xref="CDD:238641" misc_feature 6006..6932 /gene="r" /note="Aspartate carbamoyltransferase, catalytic subunit [Nucleotide transport and metabolism]; Region: PyrB; COG0540" /db_xref="CDD:440306" polyA_site 7061 /gene="r" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 agcactgagt ccgttttaac tgggcgctga attcggttgt ttgactttca tttgccacac 61 gctaattgaa gtcaattcgc aagcgagcaa caacgtaaac agtgttaaat gtgcgaaatt 121 ggccagctct gataacggga taacggtatc gcgaaacaaa cggcagaagg cgcgtttgaa 181 tcgaaactaa aacgtgttca caactacaag cgcagctgag cgagagacaa aaagagagct 241 tgagatagaa caaggaattc aaccaaccat ccatgatgcc ccctgcggac tgttacctgg 301 cactggagga cggcaccgtg atgccgggcc actcctttgg ccacgttccc gcggacaaat 361 cgggagcagg cggcgttggc ggcgaggtgg tcttccagac gggcatggtc ggctacacgg 421 aggcgctgac ggatcgctcg tacagcggcc agatcctggt gctaacgtac ccgctgatcg 481 gcaactacgg cgttccgtct ccggatgagc aggacgagca cgggctgccg ctgcacttcg 541 agtggatgca gggcgtcgtc caggccaccg ctttggtggt cggcgaggtg gccgatgcgg 601 cctggcactg gcgcacctgg aagacgctgc caaagtggct gaagcagcac aaagtgcccg 661 gcatcagtgg catcgacacc cgagccctga ccaaaaagct gcgggaacag ggcagcctgc 721 tgggcaggat tgtctacgag aagccaccgg ttgaggggct gcccaagtcc agtttcctcg 781 atccgaacac ccgcaatttg gccaaggagt gcagtgtgca ggagcgtcgc gtttacgggg 841 atcccaatgg caagggaccc cggatcgcca tcctcgactg cggactgaag ctcaaccagc 901 tgcgatgcct gctgcagcgc ggcgcctcgg tgattttgct accctggaac gcccgcctcg 961 aggaggagca gttcgacgcc ctcttcctgt ccaacggacc cggtaatccc gagagctgcg 1021 acgagatcgt ccaacaggtt cgcaaagtga tcgaggaggg tgtgaagcca gtgttcggca 1081 tctgcctggg tcaccagctg ctggcgaagg ccatcggctg ctccacgtac aagatgaagt 1141 acggcaatcg tggccacaat ttgccctgcc tgcaccgcgc caccggccgc tgcctgatga 1201 cctcgcagaa ccatggatat gccgtcgatc tggagcagct gcccgccggc tggtcggagc 1261 tctttgtgaa cgccaacgat gggaccaatg agggcatagt ccatgccagc aagccctact 1321 tttcggtgca gtttcatccg gagcatcatg ccgggccgca ggatacggag ttcctctttg 1381 acgtcttcct ggagagcatt tcccagcggg atctctccat accgcagctc atcgagcagc 1441 gattgcgtac gcttaatccc acgaagggaa tccccgagaa gccccgcaag gtgctaatcc 1501 tcggctccgg cggcctctcc atcggtcagg ccggtgagtt cgactattcc ggctcgcagg 1561 ccatcaaagc gatgcgggaa tccaacatac agacggtgct gatcaatccg aacatagcca 1621 cggtgcagac ctccaaggga atggccgaca agtgctactt cctgcccctc accgcgcact 1681 atgtggagca ggtgatcaag tcggagcgac cgaatggcgt actcctcacc tttggcggcc 1741 aaacggcgct caattgcggc gtggaattgg agcgagcagg gatcttcagc aaatacaacg 1801 tgcgcatact gggcacaccc attcaatcga tcatcgagac ggaggatcgc aaactatttg 1861 ccgagcgggt gaatgagatt ggtgagcagg tggcgccctc agaggcggtt tactccgttg 1921 ccgaagccct cgatgcggct ggtagattgg gctaccctgt aatggcccgt gccgcctttt 1981 ccctcggagg attgggctct ggctttgcca acaacgagca ggagctgcag agtctcgctc 2041 aacaggcgct ggcccattcg agtcaactaa ttgtggacaa atcgctgaag ggctggaagg 2101 aggtggagta cgaggtggtt cgcgatgcct acgacaattg cattacggtc tgcaacatgg 2161 agaactttga tccgctgggc atacacacgg gcgagagtat agtggtggcc ccgtcgcaaa 2221 ctttatcgga tcgggagtat cagatgctga ggagcaccgc tttgaaggtc attcgtcact 2281 ttggcgtcgt cggcgagtgt aatatacagt atgccttgaa tccgcactcc gagcaatact 2341 acatcatcga ggtaaatgcc cggctgtcga ggagttccgc cttggccagc aaggccaccg 2401 gctatccact ggcctatgtg gcggctaaac tagcgctggg attgcctctc cctgagatca 2461 agaactcggt gacgggaaat acaacagcct gctttgagcc ctccctcgat tactgtgtgg 2521 tcaagatacc gcgctgggat ttggccaaat tcgtgagggt tagcaagcac attggtagct 2581 cgatgaagag cgtcggcgag gtgatggcca ttggcaggaa cttcgaggag gccttccaga 2641 aggctttgcg catggtggac agcgatgtgc tgggctttga acccgatgtc gttgccctgg 2701 atcaagagca actatcggag cccacggata ggagaccctt tgtcttagcc gctgccctcg 2761 aatcaggcat gtgcgtccag gggctgcatg atttgaccaa gattgattgc tggttcctgc 2821 acaagctgga gaggattata gaattgagaa ctcttctatc cacgaggggt attcgcattg 2881 atagggagtt actccttcag gccaagcgct atggcttctc ggacaagcag atagccaagg 2941 ccaccaagag ctccgaattg gcagtgcgtc atcagcggca ggagttcggc attcgtcccc 3001 atgtcaagca gatcgacacg gtggccggcg aatggccagc gagcactaat tatctgtata 3061 atacatataa tgggagtgag cacgatgtgg atttcccagg tggtcatacc atagtcgtgg 3121 gatctggagt atatcgcata ggatcctcgg tggagtttga ttggtgtgcc gttggctgtc 3181 taagggagct gaggaaactc cagcgaccca ccatcatgat caactataat cctgagacgg 3241 tttcgaccga ctacgacatg tgcgatcgtt tgtactttga ggagatcagc ttcgaggtcg 3301 tgatggatat ctatgagctg gagaacagcg agggcatcat cctctccatg ggcggccagt 3361 tgcccaataa tatagccatg gatctgcatc gccagcaggc caaggtgctg ggcacctcac 3421 ccgaatccat tgattgcgcc gagaataggt ttaaattctc gagaatgctg gatagaaagg 3481 gtatcctgca gccccgttgg aaggagctga ccaacctcca gtcggccatt gacttttgcg 3541 aggaggtggg ctacccctgc ttagtaagac catcctatgt cctctccggc gccgccatga 3601 atgtggccta ctcgaatcag gatctggaaa cgtatttgaa tgccgcctcc gaggtgagtc 3661 gcgagcatcc ggtggtgatc tccaagttcc tcaccgaggc caaggagatc gatgtggatg 3721 cagtggcggc ggatggaagg atcctttgca tggctgtttc ggagcatgtg gagaatgccg 3781 gtgtgcattc aggtgatgcc acgctggtca ccccgccgca ggatttgaat gcggagactc 3841 tgaaggccat caagcagatc acctgcgatt tggccagcgt tttggatgtc acgggaccgt 3901 ttaacatgca gctaatagcc aagaataatg agctcaaggt cattgagtgt aatgtgaggg 3961 tgtcgcgatc ctttcccttc gtctcgaaga ccctggatca tgactttgtg gccacggcga 4021 cgagggcgat agttggcctg gatgtggagc cactggatgt gctccatgga gtcgggaagg 4081 tgggcgtcaa ggtgccacag ttcagcttct cgcggctcgc cggagcggat gtccagctgg 4141 gcgtcgagat ggcctccacc ggcgaggtgg cctgcttcgg ggacaatcgc tatgaggctt 4201 atctgaaggc catgatgtcg acgggcttcc agattcctaa gaatgcggtg ctcctctcca 4261 tcggcagctt caagcacaaa atggagctgc tgccctccat ccgggacctg gccaagatgg 4321 gctacaagct gtacgcctcc atgggcaccg gcgactttta cgcagaacat ggcgtcgatg 4381 tggaatctgt gcagtggacg ttcgacaaga cgacgcccga tgacatcaac ggggaactga 4441 ggcatctggc cgaggtcctg gccaacaagc agttcgacct ggtcatcaac ctgcccatga 4501 gcggcggggg cgccaggagg gtctcctcgt tcatgaccca tggctaccgc acccgtcgcc 4561 tggccgtgga ctactcgatt ccgctggtga cggacgtgaa gtgcaccaag ctgctggtgg 4621 aatcgatgcg tctgaacggc ggcaagccgg cgatgaagac gcacacggac tgcatgacct 4681 cgcgccggat tgtgaagctg cccggcttca tcgatgtcca tgtgcatctc cgtgagccgg 4741 gggcgacgca caaggaggat ttcgcgagcg gcacagcggc agctttggcc ggtggagtga 4801 ccctggtctg cgcgatgccc aacacaaatc cctcgatcgt cgaccgcgag accttcaccc 4861 aattccagga gctggccaag gcgggatcgc gatgcgacta cgctttgtat gtgggcgcct 4921 cggacgcgaa ttggtcgcaa gtcaacgagc tggccagcca ggcgtgcgga ttgaagatgt 4981 acttaaacga cacctttggc actctgaagc tcagcgacat gaccgcctgg cagcggcacc 5041 tgacccactg gcccaagcgg gcgcccattg tttgtcatgc cgagaagcag agcacggcgg 5101 ccattatcct gatggcccat cttctcgagc gtcccgttca catctgccat gtggcgcgca 5161 aggaggagat ccagctgata cgcgccgcca aggagaaggg catcaaggtg acgtgcgagg 5221 tgtgtccgca tcatttgttc ctcagcacca aggatgtgga acgtgtaggc ggcgcaggga 5281 tgtcggaggt gcgtccgctg ctctgctcgc ccgaggatca ggaggcgctg tgggagaaca 5341 tggagtatat cgatgtgttt gccaccgatc atgcaccgca cacgctggcc gagaagcgtt 5401 cggagcgacc gccgcctggt tttccgggcg tggagaccat tctacccctg ctactgcagg 5461 ccgtcgccga aggtcgctta actttggagg acatcaagcg gaagttccat cgcaatccgc 5521 gaagcatttt caatctgccc gagcaggcgc acacctatgt ggaggtggat ctggacgagg 5581 agtggaccat aacgggcagc gagctgaaga gcaagtccgg ctggacgccg ttcgagggca 5641 ccaaggtgaa gggacgcgtc catcgggtcg ttctgcgcgg cgaggtggcc ttcatcgatg 5701 gccaggtgct ggttcagccg ggctttggcc agaatgtgcg ctccaaaacg ggacaagtgg 5761 gagcccaagg acaattggaa caaccggaca acctgctgcc cagcgacagc gatgccaatg 5821 atacctttgc ccgcctcctc accgcatcat caaccacatc ttcttcctcg actaaagtgc 5881 actttgtgga tggggccaac tttgtgcgtc ccatttcgcc ggcaccgcgc gtccgtttgg 5941 attccaccag caacacggcg ctgcgggaat acctgcaacg ctcctccagc cccaatccgg 6001 tggcccattc gttggtgggc aagcacattt tggccgtcga tatgttcagc aaggagcatc 6061 tcaacgatat cttcaacctc gcccagctgc tcaagtcgcg cgtgaccaag gatcgtccgg 6121 tggacgagct gctgcgcggc aagatcatgg ccagtgtctt ctacgaggtg agcacgcgga 6181 cgcagtgcag cttcgccgct gccatgctgc gtttgggtgg ccgcgtgatc agcatggacc 6241 agatcacgtc gtcggtgaag aagggcgaga gcctcgagga cagcatcaag gtgatgggca 6301 gctatgcgga cgtcatggtc ctgcgccatc caacgccggg agctgtggcg cgcgccgcaa 6361 ccttctcccg gaaaccgctg atcaatgccg gcgatggcgt cggggagcat cccacgcagg 6421 cgctgctgga catcttcacc attcgcgagg agatcggcac cgtgaacggg ctgaccatca 6481 ctttggccgg tgatttgaag aacggacgca ccgtgcactc gctggcccgc ctgctgaccc 6541 tctacaacgt gaccctgcag tatgtggcgc cccacggcct gcagatgccc gacgagatca 6601 cccagtttgt gcaccagcgc ggcatcaagc agctcttcgc ctccagcttc gaggaggtgc 6661 tggccagcac ggatgtgctc tacatgaccc gcatacagcg ggagcgattc gacagcgagt 6721 cggcctacaa ggagtgctgt ggccatctgg tggtgacgcc cgagctgatg acgctggcca 6781 agaagcgttc gattgtgctg catccgctgc cgcgtctgga cgagatcagt cgcgactttg 6841 actcggaccc cagggccgcc tacttccggc aggcggagta cggcatgtac gtccgcatgg 6901 ccctgctggc catggtcgtg ggcggtcgca atacggcgct ctagaggatt acccacttac 6961 tttgactttc tcaatctttt ttttgtttgc tgtatacaat tttttatact acacatgtat 7021 gtgctacgaa tgcatacgaa tatattattc catttggtta a