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LOCUS XM_017160768 1724 bp mRNA linear INV 09-DEC-2024 mRNA. ACCESSION XM_017160768 VERSION XM_017160768.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017160768.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1724 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1724 /gene="LOC108070338" /note="polyubiquitin-C; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 99 Proteins" /db_xref="GeneID:108070338" CDS 178..1554 /gene="LOC108070338" /codon_start=1 /product="polyubiquitin-C" /protein_id="XP_017016257.1" /db_xref="GeneID:108070338" /translation="MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENV KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST LHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK QLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV LRLRGGAL" misc_feature 178..405 /gene="LOC108070338" /note="ubiquitin-like (Ubl) domain found in ubiquitin; Region: Ubl_ubiquitin; cd01803" /db_xref="CDD:340501" misc_feature order(193..204,208..210,277..288,295..297,301..303, 307..309,313..324,379..405) /gene="LOC108070338" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:340501" misc_feature order(199..213,268..282,295..297,301..303,307..309, 313..324,379..381,385..405) /gene="LOC108070338" /note="E1 interaction site [polypeptide binding]; other site" /db_xref="CDD:340501" misc_feature 406..633 /gene="LOC108070338" /note="ubiquitin-like (Ubl) domain found in ubiquitin; Region: Ubl_ubiquitin; cd01803" /db_xref="CDD:340501" misc_feature order(421..432,436..438,505..516,523..525,529..531, 535..537,541..552,607..633) /gene="LOC108070338" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:340501" misc_feature order(427..441,496..510,523..525,529..531,535..537, 541..552,607..609,613..633) /gene="LOC108070338" /note="E1 interaction site [polypeptide binding]; other site" /db_xref="CDD:340501" misc_feature 634..861 /gene="LOC108070338" /note="ubiquitin-like (Ubl) domain found in ubiquitin; Region: Ubl_ubiquitin; cd01803" /db_xref="CDD:340501" misc_feature order(649..660,664..666,733..744,751..753,757..759, 763..765,769..780,835..861) /gene="LOC108070338" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:340501" misc_feature order(655..669,724..738,751..753,757..759,763..765, 769..780,835..837,841..861) /gene="LOC108070338" /note="E1 interaction site [polypeptide binding]; other site" /db_xref="CDD:340501" misc_feature 862..1089 /gene="LOC108070338" /note="ubiquitin-like (Ubl) domain found in ubiquitin; Region: Ubl_ubiquitin; cd01803" /db_xref="CDD:340501" misc_feature order(877..888,892..894,961..972,979..981,985..987, 991..993,997..1008,1063..1089) /gene="LOC108070338" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:340501" misc_feature order(883..897,952..966,979..981,985..987,991..993, 997..1008,1063..1065,1069..1089) /gene="LOC108070338" /note="E1 interaction site [polypeptide binding]; other site" /db_xref="CDD:340501" misc_feature 1090..1317 /gene="LOC108070338" /note="ubiquitin-like (Ubl) domain found in ubiquitin; Region: Ubl_ubiquitin; cd01803" /db_xref="CDD:340501" misc_feature order(1105..1116,1120..1122,1189..1200,1207..1209, 1213..1215,1219..1221,1225..1236,1291..1317) /gene="LOC108070338" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:340501" misc_feature order(1111..1125,1180..1194,1207..1209,1213..1215, 1219..1221,1225..1236,1291..1293,1297..1317) /gene="LOC108070338" /note="E1 interaction site [polypeptide binding]; other site" /db_xref="CDD:340501" misc_feature 1318..1545 /gene="LOC108070338" /note="ubiquitin-like (Ubl) domain found in ubiquitin; Region: Ubl_ubiquitin; cd01803" /db_xref="CDD:340501" misc_feature order(1333..1344,1348..1350,1417..1428,1435..1437, 1441..1443,1447..1449,1453..1464,1519..1545) /gene="LOC108070338" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:340501" misc_feature order(1339..1353,1408..1422,1435..1437,1441..1443, 1447..1449,1453..1464,1519..1521,1525..1545) /gene="LOC108070338" /note="E1 interaction site [polypeptide binding]; other site" /db_xref="CDD:340501" polyA_site 1724 /gene="LOC108070338" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cggccgtcaa tcggagcatt agctgtgaaa aaatagtaga gagcggacgt gaaaaaagga 61 aagcgaaaaa gcaagttttt gaacatcaaa aagtattatt caaaaagtgc agaacccaaa 121 aagtttcgag agataaattg agtttttatt gtgcggcaaa ttaaaaaata agccaaaatg 181 caaatttttg tgaagacttt gactggcaag accatcactt tggaggttga gccttccgat 241 accattgaga atgtcaaggc caagatccag gacaaggagg gcatccctcc agatcagcag 301 cgtctgatct tcgctggaaa gcagctggaa gatggacgca ccttgtcgga ctacaacatc 361 cagaaggagt ccacccttca cttggttctc cgtctccgag gaggcatgca gatcttcgtg 421 aagactttga ctggcaagac catcactttg gaggtagaac cctccgatac cattgagaac 481 gtgaaggcca agatccagga caaggaggga atccctccag atcagcagcg tctgatcttc 541 gctggaaagc agctggagga cggacgcact ctatccgact acaacatcca gaaggagtct 601 actttgcatt tggtgctccg tctgcgtgga ggcatgcaga tcttcgtcaa gactcttact 661 ggcaagacca tcactttgga ggttgagcct tccgatacca ttgagaacgt gaaggccaag 721 atccaggaca aggagggtat ccccccagat cagcagcgat tgatcttcgc tggcaagcag 781 ctggaagacg gacgcacctt gtccgattac aacatccaga aggagtccac ccttcacttg 841 gtcctgcgtc tccgtggagg catgcagatc ttcgtgaaga ctcttaccgg aaagaccatc 901 acccttgagg tcgagccatc cgataccatt gagaatgtca aggccaagat ccaagacaag 961 gagggaattc ctccagatca gcagcgtttg atcttcgccg gaaagcagct ggaggatgga 1021 cgcaccttgt ccgactacaa catccagaag gagtctactt tgcatttggt tctccgtctg 1081 cgtggtggca tgcagatctt tgtaaagact ctcactggca agaccatcac ccttgaggtt 1141 gagccttccg ataccatcga gaatgttaag gctaagatcc aggacaagga gggaatccct 1201 ccagatcagc agcgtttgat cttcgccgga aagcagctgg aggatggacg caccttgtcc 1261 gactacaaca tccagaagga gtctactttg catttggttc tccgtctgcg tggtggcatg 1321 cagatctttg taaagactct cactggcaag accatcaccc ttgaggttga gccttccgat 1381 accatcgaga atgttaaggc taagatccag gacaaggagg gaatccctcc agatcagcag 1441 cgtttgatct tcgccggaaa gcagctggag gacggacgca ccttgtccga ttacaacatc 1501 cagaaggagt ctactttgca tttggtcctg cgtctgcgtg gtggcgctct ctagattttc 1561 tcacttttat aaaaaataat ctcatccatt tgatcttgcc acggcaaaac acaagtattc 1621 atgctaaatt ttagttaatc ggctttgaaa aaaggcttca agtataatca caacatatat 1681 tggtattcta aaaataaaaa ttcaatttgt gtgttcaaaa gtaa