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LOCUS XM_017160757 4639 bp mRNA linear INV 09-DEC-2024 (Tomosyn), transcript variant X4, mRNA. ACCESSION XM_017160757 VERSION XM_017160757.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017160757.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4639 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4639 /gene="Tomosyn" /note="syntaxin-binding protein tomosyn; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108070330" CDS 602..4384 /gene="Tomosyn" /codon_start=1 /product="syntaxin-binding protein 5 isoform X3" /protein_id="XP_017016246.1" /db_xref="GeneID:108070330" /translation="MKKFTFKGVLDGFRQSVQPQATRQEQEIQEQLKADHFTLKKTFR HGFPYSPTSFAFDPVQKLLAIGDKSGYIRILGRPGVDAHAKHEGESECAVLFAQFLVN EGALVTVTADDTIHLWSIRQKTPRIVQSLKFQRERVTCIHLPVGSKWLYVGTEKGNIH VVHIDTFALSGYIINWNKAIEVVRTSHPGAVIALCDNPLDANKLLIAFECGLLVLWDL KAKCAELRWQAAEAVKSLAWHYEGKYFVSSHTDGSICSWPTKPQAKPQSQVCPHAKIN KDGNAEKCKPIYKVDLKSSATGETFTIFSGGMPSEKGSKSNCITVMVGKATTVLEMEH AVCDFITLCENPWPCETQEPYAIAVLLQYDLVLIDLLTPGFPCFESPYPMDLHESPVT CCTYLTDCPSDLVPAFYSVGRTTTSKKSCFSEREWPISGGEWSPASCSYSEIVITGHQ DGSLKFWDSGAGTLQILYKLKTAKMFEKPRSHVAHSHPESDNPLAVHLIFLCSESRRL CVAGAMGQVMLFKFRKVESTSEVLVLEIPILYENFDDIYGTSPECDFLTGHQVQKAES SDSDKTTECSLKVRFGAQRKPPGFQSQLVCLTTGPNRRNVQVTSLCISSSYGLMAYGT EYGLVIIDIIQKICLLSVACPDLYGAHDPYSRTPKSPKRIENKEEQSRSPSSDQINGS GVATAAPQQQQSQQQQQQQQLSQQQQQQQQQLQQQQQQQSMGGGPDSGDHVATSSSAA AAAAATATLAGSSGIYGADDADKLDGTFSRSRSSSMSSIDMSSSESVTCLAFIESYAK RNDILTLVPTLWIGTSFGSILTLFITMPERDVRKSQPVLITINGGPVVRLKGSITSMS FLDSYGSIIPYTFETWRDEKRGDKDRTPTKSSSRTSPTFAPTTANTISNTSVAGGMAG AASSGGAVGGAGGAAGGAASGGSAAGGAAGGAAGGASAGAAGGSGAGATGGGGGGMSS SSASSSGISGSVSTGLETLTDRQYIVIASEKQTKVFDVANQCCINRIQLSEMDFAVKA ETITMKDGSCLATYLSNGHLMVHSLPSLKLLLDTDFLPLMELSFQTKCKQGIVDPMLS IWGQQIIVHEDTTQISKIFCFSHKGHGLYMASPTEIQKFTISSEFCQFILEMMGELYT VHEMPEQPKEGFFKGLFGGGAKLLDREELFGEQSGKPNRSVARHIPGANLEQLGARAS TAASEISRAHQLAMERGEKLNLLEERAERMANTAQDFSGTAHQLMLKYKDKKWYQL" misc_feature <722..1372 /gene="Tomosyn" /note="WD40 repeat [General function prediction only]; Region: WD40; COG2319" /db_xref="CDD:441893" misc_feature 884..1000 /gene="Tomosyn" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1013..1153 /gene="Tomosyn" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1175..1279 /gene="Tomosyn" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1403..1729 /gene="Tomosyn" /note="LLGL2; Region: LLGL; pfam08366" /db_xref="CDD:462446" misc_feature 4178..4360 /gene="Tomosyn" /note="SNARE domain of STXBP5, STXBP6 and related proteins; Region: R-SNARE_STXBP5_6; cd15873" /db_xref="CDD:277226" misc_feature order(4187..4189,4196..4201,4205..4207,4217..4222, 4226..4234,4238..4243,4247..4252,4259..4264,4268..4285, 4289..4306,4310..4327,4331..4339,4343..4348,4355..4357) /gene="Tomosyn" /note="heterotetramer interface [polypeptide binding]; other site" /db_xref="CDD:277226" misc_feature 4259..4261 /gene="Tomosyn" /note="zero layer; other site" /db_xref="CDD:277226" polyA_site 4639 /gene="Tomosyn" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gtcactttag ttttaacgaa tgtcgtttgt tttgtcgtgc tttttgttta aacattgcgt 61 tgtgttttcg tttatcgccc cgtggtgaac cgatcggcca tccaagtgga ctggtcaagc 121 gcgacaagtg tgacaagcag cggagagaat cgccatgaaa cagatattaa ttcgactatt 181 gttaacctag tttcacatct caaaaataaa tcaaacaaca aggacgagtt cagagcagcg 241 ctggcttctc tggcttcgat tacgcacagt tcaagcacta tctaaaaaca aggacaacca 301 aggactcgag ggagagactc gccgcgggca gaggaagaaa ccaatcccca cacttttcgg 361 ttctcctcgg accaggatca tcccccatcc cgaccccggc actactgttt ccccgtagaa 421 ccattccaat tctgtccact ctgtccactc cgtcactcct cgcacccaac tgcaactaca 481 actacaacta tttggtaaac tattcctcct tggccagacc attttgagag ggagcacaag 541 aacagcatcg cataactgtg gatagagcag ccggagcacg aggacgactc atgttacaaa 601 aatgaaaaag ttcacattca aaggagttct agatggattt cgacaaagcg ttcagcccca 661 agcgacacga caggagcagg agatccagga gcaactcaag gccgaccatt ttacgttaaa 721 gaaaaccttt cgccatggct ttccatactc gcccacatcc tttgccttcg atcctgtaca 781 aaagctacta gcgattggcg acaaatcggg ctacattcgc attttgggac gacctggcgt 841 cgatgcccat gccaaacacg agggcgaatc cgagtgcgcc gtgctctttg cccagttcct 901 ggtcaacgag ggcgccttgg tcaccgtcac cgccgatgac accattcact tgtggagtat 961 tcgccaaaag acaccgcgca ttgtgcagag cctgaaattt cagcgggagc gcgtgacttg 1021 catacacctg cccgtgggca gcaaatggct gtacgtgggc accgagaagg gaaacataca 1081 cgttgttcac atagatacat ttgcacttag tggttatatt attaactgga ataaagcaat 1141 tgaagtggtt agaactagtc atccaggtgc tgtgattgcg ttatgtgata atccattgga 1201 tgcaaacaag ttgcttattg catttgagtg cgggctgctt gttttgtggg atctgaaggc 1261 gaaatgcgct gaattgcgat ggcaagcggc cgaggccgtc aagtccctgg cctggcacta 1321 tgagggcaag tactttgtgt cctcgcacac ggatggctcc atttgctcct ggcccacgaa 1381 gccgcaggcc aagccgcagt cgcaggtctg tccgcatgct aaaatcaaca aggatggcaa 1441 tgcggaaaaa tgcaaaccga tttacaaagt agacttgaag tccagcgcga ctggggaaac 1501 cttcaccatt ttctcgggcg gcatgccctc ggagaagggc tccaagtcca actgcatcac 1561 ggtaatggtg ggcaaggcca ccacggtgct ggagatggag cacgccgtat gcgatttcat 1621 aacactctgc gagaatccct ggccctgcga gacccaggag ccgtatgcta ttgccgtgct 1681 gctgcaatac gacttagtat taatagactt attaacaccc ggttttccat gttttgaatc 1741 gccttatcca atggacttac acgaatcacc tgttacatgt tgcacatatt taaccgattg 1801 cccatcggat ttggttcctg ctttctattc agttggtcgc acaacgacaa gtaaaaagag 1861 ctgcttctcg gagcgcgaat ggccgatatc cggtggcgag tggtcgccgg cgtcgtgcag 1921 ctattcggag atcgtgatca ccggacacca ggacggcagc ctcaagttct gggactccgg 1981 tgcaggcacg ctgcagatcc tctataagct gaagacggcc aagatgttcg agaagccgcg 2041 ctcccacgtc gcccactcgc atccggagag cgacaatccg ctggcggtgc acctcatctt 2101 cctttgctcg gagtcgcgac gcctctgtgt ggccggcgcc atgggccagg tgatgctctt 2161 caagttccgc aaggtggagt ccacgtcgga ggtgctggtg ctggagatac cgatactcta 2221 tgagaatttt gatgacattt atggcacgag tcccgagtgc gactttctaa cgggccatca 2281 agtgcagaag gccgagtcga gtgattcgga taagacgacc gagtgttcgc tgaaggtgcg 2341 ctttggggcg cagcgcaagc cgccgggctt ccagtcgcag ctggtctgcc tcaccaccgg 2401 acccaatcgc cggaacgtgc aggtcacctc gctgtgcatc agctccagtt acggcctaat 2461 ggcttatggt accgaatatg gacttgtcat aattgatata atccaaaaaa tttgcctatt 2521 gagtgttgca tgccccgatc tgtatggcgc acatgatcct tactcgcgaa caccaaaaag 2581 tccaaaacgc attgagaaca aagaggagca aagccgatcg cccagctcag atcagatcaa 2641 cggcagcgga gttgcaactg cagcaccgca acagcagcaa tcgcagcagc aacagcagca 2701 gcagcagcta tcgcagcagc aacagcaaca gcagcagcag ctacaacagc aacagcagca 2761 gcaatcgatg ggtggtggtc ctgattccgg ggatcatgtt gcaacatcgt catcagcagc 2821 agcagcggcg gcagcaacag cgacattggc gggatcctcc gggatttacg gtgcagacga 2881 tgcagataaa ttggatggaa ctttctcaag atccagatca tcgtcaatgt ccagcattga 2941 tatgtcttcc tctgaatctg ttacctgttt agcttttatc gagagttatg caaaacgaaa 3001 tgatattttg acacttgttc ctactttgtg gattggaact agtttcggtt cgatactgac 3061 attgttcatc accatgccgg agcgagatgt gcgcaaatct cagccagtat tgataacaat 3121 aaatggtggc cccgtggtac gactcaaagg atccataact tccatgtctt ttttagactc 3181 atacggctcg atcataccct atacgtttga gacctggcgt gacgagaaaa ggggggacaa 3241 agaccgcaca cccacaaaga gcagcagccg caccagtccc acattcgcac cgacaactgc 3301 caatacaata tcaaacacct cggtcgctgg cggcatggcg ggtgctgcgt cctccggcgg 3361 agcagtcggc ggtgctggtg gtgctgccgg tggtgcggcg agtggaggat cagctgctgg 3421 cggagcagct ggtggtgcag ctggtggggc atcggctgga gcggccggcg gcagtggtgc 3481 cggagcaacc ggcggcggcg gcggcgggat gagcagcagc agcgccagca gcagcggcat 3541 cagcggaagc gtgagcaccg gcctggaaac tctcaccgat cgacaataca tcgttatcgc 3601 tagcgagaag caaacaaaag tcttcgatgt ggccaaccag tgctgcatca accgcataca 3661 attatcggaa atggattttg cagtcaaggc agaaactatc acgatgaaag atggctcttg 3721 cttagcaacc tatctttcga atggccatct aatggtacat agtcttccta gtctaaaact 3781 gttactggat actgatttct taccgcttat ggaactaagt tttcaaacaa aatgtaaaca 3841 gggaattgta gatccaatgc tttcgatatg gggtcaacag atcattgttc atgaagatac 3901 aactcaaata tcaaaaatat tttgctttag tcataaaggt catggattgt acatggcatc 3961 gcccaccgaa attcaaaaat tcacgatatc atcggaattt tgtcaattta ttttggagat 4021 gatgggtgaa ctatatacgg tacacgaaat gcccgaacag ccgaaggagg gtttcttcaa 4081 gggtcttttt ggcggcggcg ccaagctcct ggatcgcgag gagctatttg gcgagcagag 4141 cgggaagccg aaccgatcgg tggcccggca catacccggg gccaatttgg agcagctcgg 4201 cgcgagggct tccaccgccg catcggagat cagccgggcg caccagctgg ccatggagcg 4261 cggcgagaag ctcaatttgc tggaggagcg cgccgagcgc atggccaaca ctgctcaaga 4321 tttcagcggc actgcgcatc aattaatgct taaatataaa gacaagaagt ggtatcagtt 4381 gtaaaatatc tattttagga gccaattcta ccacagttat tgtaatattg cttttataac 4441 actttctact acattacgag taaagtacac ttatttaatt tctgttttca agtcgtcacg 4501 ttatttacaa aaaccgaaaa ccaacaaaaa aaaacaacaa aaaccgaaaa ttcacaaaaa 4561 caaaaacaaa aaaactgaaa gagaaaaacc aacaaaaaaa actgttttta ataaaaatat 4621 atagaccaaa aaacaggca