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LOCUS XM_017160756 5037 bp mRNA linear INV 09-DEC-2024 (Tomosyn), transcript variant X3, mRNA. ACCESSION XM_017160756 VERSION XM_017160756.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017160756.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5037 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5037 /gene="Tomosyn" /note="syntaxin-binding protein tomosyn; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108070330" CDS 604..4782 /gene="Tomosyn" /codon_start=1 /product="syntaxin-binding protein 5 isoform X2" /protein_id="XP_017016245.1" /db_xref="GeneID:108070330" /translation="MKKFTFKGVLDGFRQSVQPQATRQEQEIQEQLKADHFTLKKTFR HGFPYSPTSFAFDPVQKLLAIGDKSGYIRILGRPGVDAHAKHEGESECAVLFAQFLVN EGALVTVTADDTIHLWSIRQKTPRIVQSLKFQRERVTCIHLPVGSKWLYVGTEKGNIH VVHIDTFALSGYIINWNKAIEVVRTSHPGAVIALCDNPLDANKLLIAFECGLLVLWDL KAKCAELRWQAAEAVKSLAWHYEGKYFVSSHTDGSICSWPTKPQAKPQSQVCPHAKIN KDGNAEKCKPIYKVDLKSSATGETFTIFSGGMPSEKGSKSNCITVMVGKATTVLEMEH AVCDFITLCENPWPCETQEPYAIAVLLQYDLVLIDLLTPGFPCFESPYPMDLHESPVT CCTYLTDCPSDLVPAFYSVGRTTTSKKSCFSEREWPISGGEWSPASCSYSEIVITGHQ DGSLKFWDSGAGTLQILYKLKTAKMFEKPRSHVAHSHPESDNPLAVHLIFLCSESRRL CVAGAMGQVMLFKFRKVESTSEVLVLEIPILYENFDDIYGTSPECDFLTGHQVQKAES SDSDKTTECSLKVRFGAQRKPPGFQSQLVCLTTGPNRRNVQVTSLCISSSYGLMAYGT EYGLVIIDIIQKICLLSVACPDLYGAHDPYSRTPKSPKRIENKEEQSRSPSSDQINGS GVATAAPQQQQSQQQQQQQQLSQQQQQQQQQLQQQQQQQSMGGGPDSGDHVATSSSAA AAAAATATLAGSSGIYGADDAGAGVASGGVGVGVGGISSAISGGFSGGAAEPQQQQQV VSQQQQLQQQLQQQQSQQQQSFDQSSCDPWGGECGGGGGGGGGASGAGAQQHQYQHQH PHPHPYPHPHPYPHQTSVIQQQQSVTSYESLKKSKSQDKLDGTFSRSRSSSMSSIDMS SSESVTCLAFIESYAKRNDILTLVPTLWIGTSFGSILTLFITMPERDVRKSQPVLITI NGGPVVRLKGSITSMSFLDSYGSIIPYTFETWRDEKRGDKDRTPTKSSSRTSPTFAPT TANTISNTSVAGGMAGAASSGGAVGGAGGAAGGAASGGSAAGGAAGGAAGGASAGAAG GSGAGATGGGGGGMSSSSASSSGISGSVSTGLETLTDRQYIVIASEKQTKVFDVANQC CINRIQLSEMDFAVKAETITMKDGSCLATYLSNGHLMVHSLPSLKLLLDTDFLPLMEL SFQTKCKQGIVDPMLSIWGQQIIVHEDTTQISKIFCFSHKGHGLYMASPTEIQKFTIS SEFCQFILEMMGELYTVHEMPEQPKEGFFKGLFGGGAKLLDREELFGEQSGKPNRSVA RHIPGANLEQLGARASTAASEISRAHQLAMERGEKLNLLEERAERMANTAQDFSGTAH QLMLKYKDKKWYQL" misc_feature <724..1374 /gene="Tomosyn" /note="WD40 repeat [General function prediction only]; Region: WD40; COG2319" /db_xref="CDD:441893" misc_feature 886..1002 /gene="Tomosyn" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1015..1155 /gene="Tomosyn" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1177..1281 /gene="Tomosyn" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1405..1731 /gene="Tomosyn" /note="LLGL2; Region: LLGL; pfam08366" /db_xref="CDD:462446" misc_feature 4576..4758 /gene="Tomosyn" /note="SNARE domain of STXBP5, STXBP6 and related proteins; Region: R-SNARE_STXBP5_6; cd15873" /db_xref="CDD:277226" misc_feature order(4585..4587,4594..4599,4603..4605,4615..4620, 4624..4632,4636..4641,4645..4650,4657..4662,4666..4683, 4687..4704,4708..4725,4729..4737,4741..4746,4753..4755) /gene="Tomosyn" /note="heterotetramer interface [polypeptide binding]; other site" /db_xref="CDD:277226" misc_feature 4657..4659 /gene="Tomosyn" /note="zero layer; other site" /db_xref="CDD:277226" polyA_site 5037 /gene="Tomosyn" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tggtcacttt agttttaacg aatgtcgttt gttttgtcgt gctttttgtt taaacattgc 61 gttgtgtttt cgtttatcgc cccgtggtga accgatcggc catccaagtg gactggtcaa 121 gcgcgacaag tgtgacaagc agcggagaga atcgccatga aacagatatt aattcgacta 181 ttgttaacct agtttcacat ctcaaaaata aatcaaacaa caaggacgag ttcagagcag 241 cgctggcttc tctggcttcg attacgcaca gttcaagcac tatctaaaaa caaggacaac 301 caaggactcg agggagagac tcgccgcggg cagaggaaga aaccaatccc cacacttttc 361 ggttctcctc ggaccaggat catcccccat cccgaccccg gcactactgt ttccccgtag 421 aaccattcca attctgtcca ctctgtccac tccgtcactc ctcgcaccca actgcaacta 481 caactacaac tatttggtaa actattcctc cttggccaga ccattttgag agggagcaca 541 agaacagcat cgcataactg tggatagagc agccggagca cgaggacgac tcatgttaca 601 aaaatgaaaa agttcacatt caaaggagtt ctagatggat ttcgacaaag cgttcagccc 661 caagcgacac gacaggagca ggagatccag gagcaactca aggccgacca ttttacgtta 721 aagaaaacct ttcgccatgg ctttccatac tcgcccacat cctttgcctt cgatcctgta 781 caaaagctac tagcgattgg cgacaaatcg ggctacattc gcattttggg acgacctggc 841 gtcgatgccc atgccaaaca cgagggcgaa tccgagtgcg ccgtgctctt tgcccagttc 901 ctggtcaacg agggcgcctt ggtcaccgtc accgccgatg acaccattca cttgtggagt 961 attcgccaaa agacaccgcg cattgtgcag agcctgaaat ttcagcggga gcgcgtgact 1021 tgcatacacc tgcccgtggg cagcaaatgg ctgtacgtgg gcaccgagaa gggaaacata 1081 cacgttgttc acatagatac atttgcactt agtggttata ttattaactg gaataaagca 1141 attgaagtgg ttagaactag tcatccaggt gctgtgattg cgttatgtga taatccattg 1201 gatgcaaaca agttgcttat tgcatttgag tgcgggctgc ttgttttgtg ggatctgaag 1261 gcgaaatgcg ctgaattgcg atggcaagcg gccgaggccg tcaagtccct ggcctggcac 1321 tatgagggca agtactttgt gtcctcgcac acggatggct ccatttgctc ctggcccacg 1381 aagccgcagg ccaagccgca gtcgcaggtc tgtccgcatg ctaaaatcaa caaggatggc 1441 aatgcggaaa aatgcaaacc gatttacaaa gtagacttga agtccagcgc gactggggaa 1501 accttcacca ttttctcggg cggcatgccc tcggagaagg gctccaagtc caactgcatc 1561 acggtaatgg tgggcaaggc caccacggtg ctggagatgg agcacgccgt atgcgatttc 1621 ataacactct gcgagaatcc ctggccctgc gagacccagg agccgtatgc tattgccgtg 1681 ctgctgcaat acgacttagt attaatagac ttattaacac ccggttttcc atgttttgaa 1741 tcgccttatc caatggactt acacgaatca cctgttacat gttgcacata tttaaccgat 1801 tgcccatcgg atttggttcc tgctttctat tcagttggtc gcacaacgac aagtaaaaag 1861 agctgcttct cggagcgcga atggccgata tccggtggcg agtggtcgcc ggcgtcgtgc 1921 agctattcgg agatcgtgat caccggacac caggacggca gcctcaagtt ctgggactcc 1981 ggtgcaggca cgctgcagat cctctataag ctgaagacgg ccaagatgtt cgagaagccg 2041 cgctcccacg tcgcccactc gcatccggag agcgacaatc cgctggcggt gcacctcatc 2101 ttcctttgct cggagtcgcg acgcctctgt gtggccggcg ccatgggcca ggtgatgctc 2161 ttcaagttcc gcaaggtgga gtccacgtcg gaggtgctgg tgctggagat accgatactc 2221 tatgagaatt ttgatgacat ttatggcacg agtcccgagt gcgactttct aacgggccat 2281 caagtgcaga aggccgagtc gagtgattcg gataagacga ccgagtgttc gctgaaggtg 2341 cgctttgggg cgcagcgcaa gccgccgggc ttccagtcgc agctggtctg cctcaccacc 2401 ggacccaatc gccggaacgt gcaggtcacc tcgctgtgca tcagctccag ttacggccta 2461 atggcttatg gtaccgaata tggacttgtc ataattgata taatccaaaa aatttgccta 2521 ttgagtgttg catgccccga tctgtatggc gcacatgatc cttactcgcg aacaccaaaa 2581 agtccaaaac gcattgagaa caaagaggag caaagccgat cgcccagctc agatcagatc 2641 aacggcagcg gagttgcaac tgcagcaccg caacagcagc aatcgcagca gcaacagcag 2701 cagcagcagc tatcgcagca gcaacagcaa cagcagcagc agctacaaca gcaacagcag 2761 cagcaatcga tgggtggtgg tcctgattcc ggggatcatg ttgcaacatc gtcatcagca 2821 gcagcagcgg cggcagcaac agcgacattg gcgggatcct ccgggattta cggtgcagac 2881 gatgcaggtg cgggtgttgc tagtggcggt gtcggtgttg gtgttggtgg tattagcagt 2941 gcgattagcg gtggatttag cggtggtgcg gctgagccgc aacagcagca acaggtggtg 3001 tcgcagcagc agcagttgca acagcagcta cagcagcagc aatcgcaaca gcagcaatcg 3061 tttgatcaat cgtcttgtga tccatggggc ggcgagtgcg gtggcggcgg cggcggtggt 3121 ggtggtgcta gcggtgcagg tgcgcaacaa catcaatatc agcatcagca tccgcatccg 3181 catccgtatc cgcatccgca tccgtatccg catcaaacat ccgttataca gcaacagcag 3241 tcagtgacat cgtacgagtc cctaaaaaag tccaaatcac aagataaatt ggatggaact 3301 ttctcaagat ccagatcatc gtcaatgtcc agcattgata tgtcttcctc tgaatctgtt 3361 acctgtttag cttttatcga gagttatgca aaacgaaatg atattttgac acttgttcct 3421 actttgtgga ttggaactag tttcggttcg atactgacat tgttcatcac catgccggag 3481 cgagatgtgc gcaaatctca gccagtattg ataacaataa atggtggccc cgtggtacga 3541 ctcaaaggat ccataacttc catgtctttt ttagactcat acggctcgat cataccctat 3601 acgtttgaga cctggcgtga cgagaaaagg ggggacaaag accgcacacc cacaaagagc 3661 agcagccgca ccagtcccac attcgcaccg acaactgcca atacaatatc aaacacctcg 3721 gtcgctggcg gcatggcggg tgctgcgtcc tccggcggag cagtcggcgg tgctggtggt 3781 gctgccggtg gtgcggcgag tggaggatca gctgctggcg gagcagctgg tggtgcagct 3841 ggtggggcat cggctggagc ggccggcggc agtggtgccg gagcaaccgg cggcggcggc 3901 ggcgggatga gcagcagcag cgccagcagc agcggcatca gcggaagcgt gagcaccggc 3961 ctggaaactc tcaccgatcg acaatacatc gttatcgcta gcgagaagca aacaaaagtc 4021 ttcgatgtgg ccaaccagtg ctgcatcaac cgcatacaat tatcggaaat ggattttgca 4081 gtcaaggcag aaactatcac gatgaaagat ggctcttgct tagcaaccta tctttcgaat 4141 ggccatctaa tggtacatag tcttcctagt ctaaaactgt tactggatac tgatttctta 4201 ccgcttatgg aactaagttt tcaaacaaaa tgtaaacagg gaattgtaga tccaatgctt 4261 tcgatatggg gtcaacagat cattgttcat gaagatacaa ctcaaatatc aaaaatattt 4321 tgctttagtc ataaaggtca tggattgtac atggcatcgc ccaccgaaat tcaaaaattc 4381 acgatatcat cggaattttg tcaatttatt ttggagatga tgggtgaact atatacggta 4441 cacgaaatgc ccgaacagcc gaaggagggt ttcttcaagg gtctttttgg cggcggcgcc 4501 aagctcctgg atcgcgagga gctatttggc gagcagagcg ggaagccgaa ccgatcggtg 4561 gcccggcaca tacccggggc caatttggag cagctcggcg cgagggcttc caccgccgca 4621 tcggagatca gccgggcgca ccagctggcc atggagcgcg gcgagaagct caatttgctg 4681 gaggagcgcg ccgagcgcat ggccaacact gctcaagatt tcagcggcac tgcgcatcaa 4741 ttaatgctta aatataaaga caagaagtgg tatcagttgt aaaatatcta ttttaggagc 4801 caattctacc acagttattg taatattgct tttataacac tttctactac attacgagta 4861 aagtacactt atttaatttc tgttttcaag tcgtcacgtt atttacaaaa accgaaaacc 4921 aacaaaaaaa aacaacaaaa accgaaaatt cacaaaaaca aaaacaaaaa aactgaaaga 4981 gaaaaaccaa caaaaaaaac tgtttttaat aaaaatatat agaccaaaaa acaggca