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LOCUS XM_017160754 5249 bp mRNA linear INV 09-DEC-2024 (Tomosyn), transcript variant X2, mRNA. ACCESSION XM_017160754 VERSION XM_017160754.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017160754.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5249 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5249 /gene="Tomosyn" /note="syntaxin-binding protein tomosyn; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108070330" CDS 591..4994 /gene="Tomosyn" /codon_start=1 /product="syntaxin-binding protein 5 isoform X1" /protein_id="XP_017016243.2" /db_xref="GeneID:108070330" /translation="MKKFTFKGVLDGFRQSVQPQATRQEQEIQEQLKADHFTLKKTFR HGFPYSPTSFAFDPVQKLLAIGDKSGYIRILGRPGVDAHAKHEGESECAVLFAQFLVN EGALVTVTADDTIHLWSIRQKTPRIVQSLKFQRERVTCIHLPVGSKWLYVGTEKGNIH VVHIDTFALSGYIINWNKAIEVVRTSHPGAVIALCDNPLDANKLLIAFECGLLVLWDL KAKCAELRWQAAEAVKSLAWHYEGKYFVSSHTDGSICSWPTKPQAKPQSQVCPHAKIN KDGNAEKCKPIYKVDLKSSATGETFTIFSGGMPSEKGSKSNCITVMVGKATTVLEMEH AVCDFITLCENPWPCETQEPYAIAVLLQYDLVLIDLLTPGFPCFESPYPMDLHESPVT CCTYLTDCPSDLVPAFYSVGRTTTSKKSCFSEREWPISGGEWSPASCSYSEIVITGHQ DGSLKFWDSGAGTLQILYKLKTAKMFEKPRSHVAHSHPESDNPLAVHLIFLCSESRRL CVAGAMGQVMLFKFRKVESTSEVLVLEIPILYENFDDIYGTSPECDFLTGHQVQKAES SDSDKTTECSLKVRFGAQRKPPGFQSQLVCLTTGPNRRNVQVTSLCISSSYGLMAYGT EYGLVIIDIIQKICLLSVACPDLYGAHDPYSRTPKSPKRIENKEEQSRSPSSDQLNDT TSPDSPSLEFVPEAPGESSTANDGVATTMSSSRPSSPDGPPMVVNSSRETLVSGSAAS AAMMMAKSPQRDDAAPKELQDRRKSMSWKTFNLKRQLSKVNMKIGGLNVNADMESLKN NSIFYTPKEVSPEGATPPATEEEATPEGREEMESLDDAEMAAASSSSPSPAVRGKFRS STTDSPDEGAAAASGSSSNFRRVDFEQPAAVEVERPNNLPLADAPAPLKPARQKFKEK SRDQRLLSVPNIKYQPRDLRGGVRTLKNDVSPLTGGGGGGGVASGSGGVGGKKIHKLD GTFSRSRSSSMSSIDMSSSESVTCLAFIESYAKRNDILTLVPTLWIGTSFGSILTLFI TMPERDVRKSQPVLITINGGPVVRLKGSITSMSFLDSYGSIIPYTFETWRDEKRGDKD RTPTKSSSRTSPTFAPTTANTISNTSVAGGMAGAASSGGAVGGAGGAAGGAASGGSAA GGAAGGAAGGASAGAAGGSGAGATGGGGGGMSSSSASSSGISGSVSTGLETLTDRQYI VIASEKQTKVFDVANQCCINRIQLSEMDFAVKAETITMKDGSCLATYLSNGHLMVHSL PSLKLLLDTDFLPLMELSFQTKCKQGIVDPMLSIWGQQIIVHEDTTQISKIFCFSHKG HGLYMASPTEIQKFTISSEFCQFILEMMGELYTVHEMPEQPKEGFFKGLFGGGAKLLD REELFGEQSGKPNRSVARHIPGANLEQLGARASTAASEISRAHQLAMERGEKLNLLEE RAERMANTAQDFSGTAHQLMLKYKDKKWYQL" misc_feature <711..1361 /gene="Tomosyn" /note="WD40 repeat [General function prediction only]; Region: WD40; COG2319" /db_xref="CDD:441893" misc_feature 873..989 /gene="Tomosyn" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1002..1142 /gene="Tomosyn" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1164..1268 /gene="Tomosyn" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1392..1718 /gene="Tomosyn" /note="LLGL2; Region: LLGL; pfam08366" /db_xref="CDD:462446" misc_feature 4788..4970 /gene="Tomosyn" /note="SNARE domain of STXBP5, STXBP6 and related proteins; Region: R-SNARE_STXBP5_6; cd15873" /db_xref="CDD:277226" misc_feature order(4797..4799,4806..4811,4815..4817,4827..4832, 4836..4844,4848..4853,4857..4862,4869..4874,4878..4895, 4899..4916,4920..4937,4941..4949,4953..4958,4965..4967) /gene="Tomosyn" /note="heterotetramer interface [polypeptide binding]; other site" /db_xref="CDD:277226" misc_feature 4869..4871 /gene="Tomosyn" /note="zero layer; other site" /db_xref="CDD:277226" polyA_site 5249 /gene="Tomosyn" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 accaaagttg aacaattaat aaaaagaaaa accatgatct atttgcaaat gaaaaaaatt 61 caaaattaaa agaaaacatt tttttttgta tttttcatac gttcaagtga agaagaagca 121 gcatcagcat aagaagaaga tgtagctaac atatattaat tcgactattg ttaacctagt 181 ttcacatctc aaaaataaat caaacaacaa ggacgagttc agagcagcgc tggcttctct 241 ggcttcgatt acgcacagtt caagcactat ctaaaaacaa ggacaaccaa ggactcgagg 301 gagagactcg ccgcgggcag aggaagaaac caatccccac acttttcggt tctcctcgga 361 ccaggatcat cccccatccc gaccccggca ctactgtttc cccgtagaac cattccaatt 421 ctgtccactc tgtccactcc gtcactcctc gcacccaact gcaactacaa ctacaactat 481 ttggtaaact attcctcctt ggccagacca ttttgagagg gagcacaaga acagcatcgc 541 ataactgtgg atagagcagc cggagcacga ggacgactca tgttacaaaa atgaaaaagt 601 tcacattcaa aggagttcta gatggatttc gacaaagcgt tcagccccaa gcgacacgac 661 aggagcagga gatccaggag caactcaagg ccgaccattt tacgttaaag aaaacctttc 721 gccatggctt tccatactcg cccacatcct ttgccttcga tcctgtacaa aagctactag 781 cgattggcga caaatcgggc tacattcgca ttttgggacg acctggcgtc gatgcccatg 841 ccaaacacga gggcgaatcc gagtgcgccg tgctctttgc ccagttcctg gtcaacgagg 901 gcgccttggt caccgtcacc gccgatgaca ccattcactt gtggagtatt cgccaaaaga 961 caccgcgcat tgtgcagagc ctgaaatttc agcgggagcg cgtgacttgc atacacctgc 1021 ccgtgggcag caaatggctg tacgtgggca ccgagaaggg aaacatacac gttgttcaca 1081 tagatacatt tgcacttagt ggttatatta ttaactggaa taaagcaatt gaagtggtta 1141 gaactagtca tccaggtgct gtgattgcgt tatgtgataa tccattggat gcaaacaagt 1201 tgcttattgc atttgagtgc gggctgcttg ttttgtggga tctgaaggcg aaatgcgctg 1261 aattgcgatg gcaagcggcc gaggccgtca agtccctggc ctggcactat gagggcaagt 1321 actttgtgtc ctcgcacacg gatggctcca tttgctcctg gcccacgaag ccgcaggcca 1381 agccgcagtc gcaggtctgt ccgcatgcta aaatcaacaa ggatggcaat gcggaaaaat 1441 gcaaaccgat ttacaaagta gacttgaagt ccagcgcgac tggggaaacc ttcaccattt 1501 tctcgggcgg catgccctcg gagaagggct ccaagtccaa ctgcatcacg gtaatggtgg 1561 gcaaggccac cacggtgctg gagatggagc acgccgtatg cgatttcata acactctgcg 1621 agaatccctg gccctgcgag acccaggagc cgtatgctat tgccgtgctg ctgcaatacg 1681 acttagtatt aatagactta ttaacacccg gttttccatg ttttgaatcg ccttatccaa 1741 tggacttaca cgaatcacct gttacatgtt gcacatattt aaccgattgc ccatcggatt 1801 tggttcctgc tttctattca gttggtcgca caacgacaag taaaaagagc tgcttctcgg 1861 agcgcgaatg gccgatatcc ggtggcgagt ggtcgccggc gtcgtgcagc tattcggaga 1921 tcgtgatcac cggacaccag gacggcagcc tcaagttctg ggactccggt gcaggcacgc 1981 tgcagatcct ctataagctg aagacggcca agatgttcga gaagccgcgc tcccacgtcg 2041 cccactcgca tccggagagc gacaatccgc tggcggtgca cctcatcttc ctttgctcgg 2101 agtcgcgacg cctctgtgtg gccggcgcca tgggccaggt gatgctcttc aagttccgca 2161 aggtggagtc cacgtcggag gtgctggtgc tggagatacc gatactctat gagaattttg 2221 atgacattta tggcacgagt cccgagtgcg actttctaac gggccatcaa gtgcagaagg 2281 ccgagtcgag tgattcggat aagacgaccg agtgttcgct gaaggtgcgc tttggggcgc 2341 agcgcaagcc gccgggcttc cagtcgcagc tggtctgcct caccaccgga cccaatcgcc 2401 ggaacgtgca ggtcacctcg ctgtgcatca gctccagtta cggcctaatg gcttatggta 2461 ccgaatatgg acttgtcata attgatataa tccaaaaaat ttgcctattg agtgttgcat 2521 gccccgatct gtatggcgca catgatcctt actcgcgaac accaaaaagt ccaaaacgca 2581 ttgagaacaa agaggagcaa agccgatcgc ccagctcaga tcagctgaac gacacgacca 2641 gtccggacag tccgtcgctt gaatttgtac cggaggctcc cggcgaatcg tcgacggcca 2701 acgacggcgt ggcgacaacg atgagctcct cacgtcccag ttcaccggat ggtccaccga 2761 tggtggtgaa cagttcccgt gaaacactgg tcagcggatc ggcggcatcg gcggccatga 2821 tgatggccaa gagtccccag cgggatgatg cggctcccaa ggagctgcag gacagacgca 2881 agtcaatgtc ctggaaaacg ttcaatttga agcgtcaatt atcgaaagtc aatatgaaga 2941 tcggcggtct gaatgtcaac gccgacatgg agtcgctcaa gaataactcc attttctaca 3001 cacccaagga ggtgtcaccg gagggagcca cgccaccggc gaccgaggag gaggccacgc 3061 cggagggcag ggaggagatg gagtcgctgg atgatgccga aatggcagca gcatcatcat 3121 catcaccatc gccggcagtt cgtggcaaat ttcgatcctc gaccaccgat tcgccagatg 3181 agggggccgc cgccgccagc ggcagcagca gcaactttcg tcgggttgac tttgaacagc 3241 cggctgcggt ggaggtggag cgacccaaca atctgccact ggcggatgca ccagctccgc 3301 tgaagcccgc ccgccaaaag ttcaaggaga agtcgcgcga tcagcggcta ttgtccgttc 3361 cgaatatcaa gtaccagccg cgagatttgc gaggcggtgt gcgcaccctt aagaacgatg 3421 tctccccgtt gacgggcggc ggtggtggag gaggcgttgc cagcggcagc ggaggagttg 3481 gcggcaagaa gatacataaa ttggatggaa ctttctcaag atccagatca tcgtcaatgt 3541 ccagcattga tatgtcttcc tctgaatctg ttacctgttt agcttttatc gagagttatg 3601 caaaacgaaa tgatattttg acacttgttc ctactttgtg gattggaact agtttcggtt 3661 cgatactgac attgttcatc accatgccgg agcgagatgt gcgcaaatct cagccagtat 3721 tgataacaat aaatggtggc cccgtggtac gactcaaagg atccataact tccatgtctt 3781 ttttagactc atacggctcg atcataccct atacgtttga gacctggcgt gacgagaaaa 3841 ggggggacaa agaccgcaca cccacaaaga gcagcagccg caccagtccc acattcgcac 3901 cgacaactgc caatacaata tcaaacacct cggtcgctgg cggcatggcg ggtgctgcgt 3961 cctccggcgg agcagtcggc ggtgctggtg gtgctgccgg tggtgcggcg agtggaggat 4021 cagctgctgg cggagcagct ggtggtgcag ctggtggggc atcggctgga gcggccggcg 4081 gcagtggtgc cggagcaacc ggcggcggcg gcggcgggat gagcagcagc agcgccagca 4141 gcagcggcat cagcggaagc gtgagcaccg gcctggaaac tctcaccgat cgacaataca 4201 tcgttatcgc tagcgagaag caaacaaaag tcttcgatgt ggccaaccag tgctgcatca 4261 accgcataca attatcggaa atggattttg cagtcaaggc agaaactatc acgatgaaag 4321 atggctcttg cttagcaacc tatctttcga atggccatct aatggtacat agtcttccta 4381 gtctaaaact gttactggat actgatttct taccgcttat ggaactaagt tttcaaacaa 4441 aatgtaaaca gggaattgta gatccaatgc tttcgatatg gggtcaacag atcattgttc 4501 atgaagatac aactcaaata tcaaaaatat tttgctttag tcataaaggt catggattgt 4561 acatggcatc gcccaccgaa attcaaaaat tcacgatatc atcggaattt tgtcaattta 4621 ttttggagat gatgggtgaa ctatatacgg tacacgaaat gcccgaacag ccgaaggagg 4681 gtttcttcaa gggtcttttt ggcggcggcg ccaagctcct ggatcgcgag gagctatttg 4741 gcgagcagag cgggaagccg aaccgatcgg tggcccggca catacccggg gccaatttgg 4801 agcagctcgg cgcgagggct tccaccgccg catcggagat cagccgggcg caccagctgg 4861 ccatggagcg cggcgagaag ctcaatttgc tggaggagcg cgccgagcgc atggccaaca 4921 ctgctcaaga tttcagcggc actgcgcatc aattaatgct taaatataaa gacaagaagt 4981 ggtatcagtt gtaaaatatc tattttagga gccaattcta ccacagttat tgtaatattg 5041 cttttataac actttctact acattacgag taaagtacac ttatttaatt tctgttttca 5101 agtcgtcacg ttatttacaa aaaccgaaaa ccaacaaaaa aaaacaacaa aaaccgaaaa 5161 ttcacaaaaa caaaaacaaa aaaactgaaa gagaaaaacc aacaaaaaaa actgttttta 5221 ataaaaatat atagaccaaa aaacaggca