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LOCUS XM_017160753 5263 bp mRNA linear INV 09-DEC-2024 (Tomosyn), transcript variant X1, mRNA. ACCESSION XM_017160753 VERSION XM_017160753.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017160753.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5263 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5263 /gene="Tomosyn" /note="syntaxin-binding protein tomosyn; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108070330" CDS 605..5008 /gene="Tomosyn" /codon_start=1 /product="syntaxin-binding protein 5 isoform X1" /protein_id="XP_017016242.2" /db_xref="GeneID:108070330" /translation="MKKFTFKGVLDGFRQSVQPQATRQEQEIQEQLKADHFTLKKTFR HGFPYSPTSFAFDPVQKLLAIGDKSGYIRILGRPGVDAHAKHEGESECAVLFAQFLVN EGALVTVTADDTIHLWSIRQKTPRIVQSLKFQRERVTCIHLPVGSKWLYVGTEKGNIH VVHIDTFALSGYIINWNKAIEVVRTSHPGAVIALCDNPLDANKLLIAFECGLLVLWDL KAKCAELRWQAAEAVKSLAWHYEGKYFVSSHTDGSICSWPTKPQAKPQSQVCPHAKIN KDGNAEKCKPIYKVDLKSSATGETFTIFSGGMPSEKGSKSNCITVMVGKATTVLEMEH AVCDFITLCENPWPCETQEPYAIAVLLQYDLVLIDLLTPGFPCFESPYPMDLHESPVT CCTYLTDCPSDLVPAFYSVGRTTTSKKSCFSEREWPISGGEWSPASCSYSEIVITGHQ DGSLKFWDSGAGTLQILYKLKTAKMFEKPRSHVAHSHPESDNPLAVHLIFLCSESRRL CVAGAMGQVMLFKFRKVESTSEVLVLEIPILYENFDDIYGTSPECDFLTGHQVQKAES SDSDKTTECSLKVRFGAQRKPPGFQSQLVCLTTGPNRRNVQVTSLCISSSYGLMAYGT EYGLVIIDIIQKICLLSVACPDLYGAHDPYSRTPKSPKRIENKEEQSRSPSSDQLNDT TSPDSPSLEFVPEAPGESSTANDGVATTMSSSRPSSPDGPPMVVNSSRETLVSGSAAS AAMMMAKSPQRDDAAPKELQDRRKSMSWKTFNLKRQLSKVNMKIGGLNVNADMESLKN NSIFYTPKEVSPEGATPPATEEEATPEGREEMESLDDAEMAAASSSSPSPAVRGKFRS STTDSPDEGAAAASGSSSNFRRVDFEQPAAVEVERPNNLPLADAPAPLKPARQKFKEK SRDQRLLSVPNIKYQPRDLRGGVRTLKNDVSPLTGGGGGGGVASGSGGVGGKKIHKLD GTFSRSRSSSMSSIDMSSSESVTCLAFIESYAKRNDILTLVPTLWIGTSFGSILTLFI TMPERDVRKSQPVLITINGGPVVRLKGSITSMSFLDSYGSIIPYTFETWRDEKRGDKD RTPTKSSSRTSPTFAPTTANTISNTSVAGGMAGAASSGGAVGGAGGAAGGAASGGSAA GGAAGGAAGGASAGAAGGSGAGATGGGGGGMSSSSASSSGISGSVSTGLETLTDRQYI VIASEKQTKVFDVANQCCINRIQLSEMDFAVKAETITMKDGSCLATYLSNGHLMVHSL PSLKLLLDTDFLPLMELSFQTKCKQGIVDPMLSIWGQQIIVHEDTTQISKIFCFSHKG HGLYMASPTEIQKFTISSEFCQFILEMMGELYTVHEMPEQPKEGFFKGLFGGGAKLLD REELFGEQSGKPNRSVARHIPGANLEQLGARASTAASEISRAHQLAMERGEKLNLLEE RAERMANTAQDFSGTAHQLMLKYKDKKWYQL" misc_feature <725..1375 /gene="Tomosyn" /note="WD40 repeat [General function prediction only]; Region: WD40; COG2319" /db_xref="CDD:441893" misc_feature 887..1003 /gene="Tomosyn" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1016..1156 /gene="Tomosyn" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1178..1282 /gene="Tomosyn" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1406..1732 /gene="Tomosyn" /note="LLGL2; Region: LLGL; pfam08366" /db_xref="CDD:462446" misc_feature 4802..4984 /gene="Tomosyn" /note="SNARE domain of STXBP5, STXBP6 and related proteins; Region: R-SNARE_STXBP5_6; cd15873" /db_xref="CDD:277226" misc_feature order(4811..4813,4820..4825,4829..4831,4841..4846, 4850..4858,4862..4867,4871..4876,4883..4888,4892..4909, 4913..4930,4934..4951,4955..4963,4967..4972,4979..4981) /gene="Tomosyn" /note="heterotetramer interface [polypeptide binding]; other site" /db_xref="CDD:277226" misc_feature 4883..4885 /gene="Tomosyn" /note="zero layer; other site" /db_xref="CDD:277226" polyA_site 5263 /gene="Tomosyn" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctggtcactt tagttttaac gaatgtcgtt tgttttgtcg tgctttttgt ttaaacattg 61 cgttgtgttt tcgtttatcg ccccgtggtg aaccgatcgg ccatccaagt ggactggtca 121 agcgcgacaa gtgtgacaag cagcggagag aatcgccatg aaacagatat taattcgact 181 attgttaacc tagtttcaca tctcaaaaat aaatcaaaca acaaggacga gttcagagca 241 gcgctggctt ctctggcttc gattacgcac agttcaagca ctatctaaaa acaaggacaa 301 ccaaggactc gagggagaga ctcgccgcgg gcagaggaag aaaccaatcc ccacactttt 361 cggttctcct cggaccagga tcatccccca tcccgacccc ggcactactg tttccccgta 421 gaaccattcc aattctgtcc actctgtcca ctccgtcact cctcgcaccc aactgcaact 481 acaactacaa ctatttggta aactattcct ccttggccag accattttga gagggagcac 541 aagaacagca tcgcataact gtggatagag cagccggagc acgaggacga ctcatgttac 601 aaaaatgaaa aagttcacat tcaaaggagt tctagatgga tttcgacaaa gcgttcagcc 661 ccaagcgaca cgacaggagc aggagatcca ggagcaactc aaggccgacc attttacgtt 721 aaagaaaacc tttcgccatg gctttccata ctcgcccaca tcctttgcct tcgatcctgt 781 acaaaagcta ctagcgattg gcgacaaatc gggctacatt cgcattttgg gacgacctgg 841 cgtcgatgcc catgccaaac acgagggcga atccgagtgc gccgtgctct ttgcccagtt 901 cctggtcaac gagggcgcct tggtcaccgt caccgccgat gacaccattc acttgtggag 961 tattcgccaa aagacaccgc gcattgtgca gagcctgaaa tttcagcggg agcgcgtgac 1021 ttgcatacac ctgcccgtgg gcagcaaatg gctgtacgtg ggcaccgaga agggaaacat 1081 acacgttgtt cacatagata catttgcact tagtggttat attattaact ggaataaagc 1141 aattgaagtg gttagaacta gtcatccagg tgctgtgatt gcgttatgtg ataatccatt 1201 ggatgcaaac aagttgctta ttgcatttga gtgcgggctg cttgttttgt gggatctgaa 1261 ggcgaaatgc gctgaattgc gatggcaagc ggccgaggcc gtcaagtccc tggcctggca 1321 ctatgagggc aagtactttg tgtcctcgca cacggatggc tccatttgct cctggcccac 1381 gaagccgcag gccaagccgc agtcgcaggt ctgtccgcat gctaaaatca acaaggatgg 1441 caatgcggaa aaatgcaaac cgatttacaa agtagacttg aagtccagcg cgactgggga 1501 aaccttcacc attttctcgg gcggcatgcc ctcggagaag ggctccaagt ccaactgcat 1561 cacggtaatg gtgggcaagg ccaccacggt gctggagatg gagcacgccg tatgcgattt 1621 cataacactc tgcgagaatc cctggccctg cgagacccag gagccgtatg ctattgccgt 1681 gctgctgcaa tacgacttag tattaataga cttattaaca cccggttttc catgttttga 1741 atcgccttat ccaatggact tacacgaatc acctgttaca tgttgcacat atttaaccga 1801 ttgcccatcg gatttggttc ctgctttcta ttcagttggt cgcacaacga caagtaaaaa 1861 gagctgcttc tcggagcgcg aatggccgat atccggtggc gagtggtcgc cggcgtcgtg 1921 cagctattcg gagatcgtga tcaccggaca ccaggacggc agcctcaagt tctgggactc 1981 cggtgcaggc acgctgcaga tcctctataa gctgaagacg gccaagatgt tcgagaagcc 2041 gcgctcccac gtcgcccact cgcatccgga gagcgacaat ccgctggcgg tgcacctcat 2101 cttcctttgc tcggagtcgc gacgcctctg tgtggccggc gccatgggcc aggtgatgct 2161 cttcaagttc cgcaaggtgg agtccacgtc ggaggtgctg gtgctggaga taccgatact 2221 ctatgagaat tttgatgaca tttatggcac gagtcccgag tgcgactttc taacgggcca 2281 tcaagtgcag aaggccgagt cgagtgattc ggataagacg accgagtgtt cgctgaaggt 2341 gcgctttggg gcgcagcgca agccgccggg cttccagtcg cagctggtct gcctcaccac 2401 cggacccaat cgccggaacg tgcaggtcac ctcgctgtgc atcagctcca gttacggcct 2461 aatggcttat ggtaccgaat atggacttgt cataattgat ataatccaaa aaatttgcct 2521 attgagtgtt gcatgccccg atctgtatgg cgcacatgat ccttactcgc gaacaccaaa 2581 aagtccaaaa cgcattgaga acaaagagga gcaaagccga tcgcccagct cagatcagct 2641 gaacgacacg accagtccgg acagtccgtc gcttgaattt gtaccggagg ctcccggcga 2701 atcgtcgacg gccaacgacg gcgtggcgac aacgatgagc tcctcacgtc ccagttcacc 2761 ggatggtcca ccgatggtgg tgaacagttc ccgtgaaaca ctggtcagcg gatcggcggc 2821 atcggcggcc atgatgatgg ccaagagtcc ccagcgggat gatgcggctc ccaaggagct 2881 gcaggacaga cgcaagtcaa tgtcctggaa aacgttcaat ttgaagcgtc aattatcgaa 2941 agtcaatatg aagatcggcg gtctgaatgt caacgccgac atggagtcgc tcaagaataa 3001 ctccattttc tacacaccca aggaggtgtc accggaggga gccacgccac cggcgaccga 3061 ggaggaggcc acgccggagg gcagggagga gatggagtcg ctggatgatg ccgaaatggc 3121 agcagcatca tcatcatcac catcgccggc agttcgtggc aaatttcgat cctcgaccac 3181 cgattcgcca gatgaggggg ccgccgccgc cagcggcagc agcagcaact ttcgtcgggt 3241 tgactttgaa cagccggctg cggtggaggt ggagcgaccc aacaatctgc cactggcgga 3301 tgcaccagct ccgctgaagc ccgcccgcca aaagttcaag gagaagtcgc gcgatcagcg 3361 gctattgtcc gttccgaata tcaagtacca gccgcgagat ttgcgaggcg gtgtgcgcac 3421 ccttaagaac gatgtctccc cgttgacggg cggcggtggt ggaggaggcg ttgccagcgg 3481 cagcggagga gttggcggca agaagataca taaattggat ggaactttct caagatccag 3541 atcatcgtca atgtccagca ttgatatgtc ttcctctgaa tctgttacct gtttagcttt 3601 tatcgagagt tatgcaaaac gaaatgatat tttgacactt gttcctactt tgtggattgg 3661 aactagtttc ggttcgatac tgacattgtt catcaccatg ccggagcgag atgtgcgcaa 3721 atctcagcca gtattgataa caataaatgg tggccccgtg gtacgactca aaggatccat 3781 aacttccatg tcttttttag actcatacgg ctcgatcata ccctatacgt ttgagacctg 3841 gcgtgacgag aaaagggggg acaaagaccg cacacccaca aagagcagca gccgcaccag 3901 tcccacattc gcaccgacaa ctgccaatac aatatcaaac acctcggtcg ctggcggcat 3961 ggcgggtgct gcgtcctccg gcggagcagt cggcggtgct ggtggtgctg ccggtggtgc 4021 ggcgagtgga ggatcagctg ctggcggagc agctggtggt gcagctggtg gggcatcggc 4081 tggagcggcc ggcggcagtg gtgccggagc aaccggcggc ggcggcggcg ggatgagcag 4141 cagcagcgcc agcagcagcg gcatcagcgg aagcgtgagc accggcctgg aaactctcac 4201 cgatcgacaa tacatcgtta tcgctagcga gaagcaaaca aaagtcttcg atgtggccaa 4261 ccagtgctgc atcaaccgca tacaattatc ggaaatggat tttgcagtca aggcagaaac 4321 tatcacgatg aaagatggct cttgcttagc aacctatctt tcgaatggcc atctaatggt 4381 acatagtctt cctagtctaa aactgttact ggatactgat ttcttaccgc ttatggaact 4441 aagttttcaa acaaaatgta aacagggaat tgtagatcca atgctttcga tatggggtca 4501 acagatcatt gttcatgaag atacaactca aatatcaaaa atattttgct ttagtcataa 4561 aggtcatgga ttgtacatgg catcgcccac cgaaattcaa aaattcacga tatcatcgga 4621 attttgtcaa tttattttgg agatgatggg tgaactatat acggtacacg aaatgcccga 4681 acagccgaag gagggtttct tcaagggtct ttttggcggc ggcgccaagc tcctggatcg 4741 cgaggagcta tttggcgagc agagcgggaa gccgaaccga tcggtggccc ggcacatacc 4801 cggggccaat ttggagcagc tcggcgcgag ggcttccacc gccgcatcgg agatcagccg 4861 ggcgcaccag ctggccatgg agcgcggcga gaagctcaat ttgctggagg agcgcgccga 4921 gcgcatggcc aacactgctc aagatttcag cggcactgcg catcaattaa tgcttaaata 4981 taaagacaag aagtggtatc agttgtaaaa tatctatttt aggagccaat tctaccacag 5041 ttattgtaat attgctttta taacactttc tactacatta cgagtaaagt acacttattt 5101 aatttctgtt ttcaagtcgt cacgttattt acaaaaaccg aaaaccaaca aaaaaaaaca 5161 acaaaaaccg aaaattcaca aaaacaaaaa caaaaaaact gaaagagaaa aaccaacaaa 5221 aaaaactgtt tttaataaaa atatatagac caaaaaacag gca