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LOCUS XM_017160749 1722 bp mRNA linear INV 09-DEC-2024 (Spx), mRNA. ACCESSION XM_017160749 VERSION XM_017160749.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017160749.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1722 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1722 /gene="Spx" /note="Spliceosomal protein on the X; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108070327" CDS 118..1137 /gene="Spx" /codon_start=1 /product="splicing factor 3B subunit 4" /protein_id="XP_017016238.1" /db_xref="GeneID:108070327" /translation="MAAGPIAERNQDATIYAGGLDDKVSETLLWELFVQAGPVVNVHM PKDRVTQMHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHQKNLDVGANI FIGNLDVEVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFASFEASDAAMD AMNGQYLCNRPISVSYAFKKDHKGERHGSAAERLLAAQNPSAHADRPHQLFADAPVQN MMPQMPGQMMPPPMMAPPPPVVPVSNNNMGMIAPPPPVPQPAPFPATIPPPPLPPMAG GQPPLPPAMGIPPPPRMMQANAWAPPGMPAPPPRPPPTNWRPPPVPFAPAPFARPYQP DGYQY" misc_feature 160..381 /gene="Spx" /note="RNA recognition motif 1 (RRM1) found in splicing factor 3B subunit 4 (SF3B4) and similar proteins; Region: RRM1_SF3B4; cd12334" /db_xref="CDD:409771" misc_feature 412..660 /gene="Spx" /note="RNA recognition motif 2 (RRM2) found in splicing factor 3B subunit 4 (SF3B4) and similar proteins; Region: RRM2_SF3B4; cd12335" /db_xref="CDD:409772" polyA_site 1722 /gene="Spx" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tttagcagga ccgtttgttt tttctgggca tttggcaacc ctgctcagtt tgcatgtcaa 61 aagaaacgcc gaaccgaaaa ttagttttta ggttttgttt ataaaaatag ctgagaaatg 121 gcagctggac cgattgctga acggaatcaa gatgccacca tctatgccgg cggtttggac 181 gacaaggtgt cggaaacgct gctctgggag ctctttgtgc aggcgggacc agtggttaac 241 gtacacatgc ccaaggatcg ggtcacccag atgcaccagg gctatggctt cgtggagttc 301 ctcagcgagg aggacgccga ctatgccatc aagatcatga acatgatcaa gttgtatggc 361 aaacccatac gcgttaataa ggcttcggcg catcagaaga atctggatgt gggcgccaat 421 atctttatag gcaatctgga tgtggaggtc gatgagaaac tgctctacga taccttctcc 481 gccttcggcg tcattctgca gacgccgaaa atcatgcgag atccggagac tggcaaatcc 541 aagagcttcg ccttcatcaa ctttgccagc ttcgaggcca gcgatgcggc catggatgcc 601 atgaatgggc agtatctgtg caatcgtcct atatccgtat cctatgcctt taagaaggat 661 cacaagggcg agcggcatgg ttcggcggcg gagcgtctgc tggccgccca gaatccctcg 721 gcgcacgcgg atcggccgca tcaactgttc gccgacgcac cggtgcagaa tatgatgccc 781 cagatgccgg gccagatgat gcccccgcct atgatggcac caccgccgcc agtggtgccc 841 gtttcgaaca acaacatggg catgattgcg ccgccgccgc cggtgccgca accagcgcca 901 ttcccggcga cgataccgcc accgccgctg ccaccgatgg ccggcggtca gccgccgctg 961 ccgccggcga tgggcattcc gccgccgccg cgcatgatgc aggcgaacgc ctgggcgccg 1021 cccggaatgc cggcaccgcc gccgcgaccg ccgcccacca actggcggcc gccgcccgtg 1081 cccttcgccc ccgcgccctt cgcacggccc tatcaacccg acggctacca gtactaaaaa 1141 ctagtgtgta gactaaggag acgacaaaat aaattgtaat aggatctatc tgggttaggc 1201 taagactgct tccgtttttt aattgccgaa atgtgtacga aaacgtattg aatcctcgtt 1261 tttcctccat ctcccaatgc ttttttgtac gatttttaaa ggatttacga acgaaagaga 1321 tgctctgatc tttttatgca atttctattc ttaataaata caaaatcagt caaaattcta 1381 gtatactttt tacaaaaatt ttcaaaagcc actaaactac ttgtactaaa tctagtttgt 1441 gtagtcgaaa agtaaaaaaa aagggtttat aaaagaaaga acctgtctaa tttcactagt 1501 gcgtggatcc ctcctttaaa tgcatttaat ttaatgtcta tatttcgaaa catgtataga 1561 aactagcttg tagtttatac aaatttaggt gagacaaaat aaactccata aaaggattta 1621 taataccata catgatttcg accagcagtt tatttttcat aatatgaaga aaaagaaatt 1681 taccaaataa aaacgaaaaa tatcagggat tgaaaacgaa aa