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LOCUS XM_017160729 3284 bp mRNA linear INV 09-DEC-2024 (org-1), mRNA. ACCESSION XM_017160729 VERSION XM_017160729.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017160729.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3284 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3284 /gene="org-1" /note="optomotor-blind-related-gene-1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108070308" CDS 623..2719 /gene="org-1" /codon_start=1 /product="T-box transcription factor TBX1" /protein_id="XP_017016218.2" /db_xref="GeneID:108070308" /translation="MTHLMGPTECASAMMTTSMQFLDTSLPDYNCYANDYWTSPYMTG GLSPMKQIEACIQTAGKDRSSYKPLEQIDAKLADIETHSTGSTGTANSSSSSLSSGNP ISNSNANASCQEQSSSLLQSDYPGGNSEASTAATSSDGTTAAGSTAAGGGSASTGSKK LKGQHKKDNSIGDNNTGKASSNISKGDSEPVHPSLAQAIVVLETKALWDQFHAQGTEM IITKTGRRMFPTFQVRIGGLDPHATYICMMDFVPMDDKRYRYAFHNSCWVVAGKADPI SPPRIHVHPDSPAAGSNWMKQIVSFDKLKLTNNQLDENGHIILNSMHRYQPRFHLVYL PPKNASLDENEHSSHFRTFIFPETSFTAVTAYQNQRVTQLKISSNPFAKGFRDDGTND VTSGGGSSMSSMSHESQARMKQQQQQQQQQLQQQQQQQQQQQLKERSAATSNFSLSCT ELSVVEQQQQQQAGVLQLPATPSSSSTSGNSPDLLGYQMELQQQQQQQHQQQQQQQPH QQQHLHQQQHQANQQQSLLQQSQNQTQYGSYHHAYQPHQPQPHPLTPHSTSSASPPAI AAGSTATGATATSAGGAGATSAVGTGATQVMTAANIYSSIGQPYAQEQSNFGAIYHHN AAAAAAAHYHHGHAHAHGHAHSHGPYASAYDKLKVSRHAAAAAYGMGATYPSFYGSAA HHQMMRPNSYIDLVPR" misc_feature 1211..1783 /gene="org-1" /note="DNA-binding domain of T-box transcription factor 1 and 10, and related T-box proteifactors; Region: T-box_TBX1_10-like; cd20187" /db_xref="CDD:410313" misc_feature order(1277..1279,1295..1300,1397..1399,1535..1537, 1544..1546,1583..1588,1712..1720,1736..1738,1745..1750, 1757..1777) /gene="org-1" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:410313" polyA_site 3284 /gene="org-1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cggaccagcg ctttacggaa cggatgtgtg cgtgatcaga gatctcggat aagatcagat 61 cagatcagat cagaaaagtg cggcggacgc gatatatacg gataatcagt tcgcacttgg 121 ccggaagaag gtggcaattg agacaactca acgctttctg attctgccag gcgaaataga 181 aagaaaacaa ataaaagaag ttcaagtcaa tcaatcagcc aaattcgaaa tacgaaaaag 241 aggaaatttt cgccagtcaa cgcgatcggg ccataaaaac attcgagcca agaaaaaagg 301 aattacattt ttttttcgat ctcgattctg attgacaact gcgaaaggtt gcggtgattt 361 ttcacaccca ttcgttcggc gatagaactg tttttatttc accatttttt ttttgcggtg 421 cacattgagt gagtgagtga gtgagatgca ataatcaaat ttgacaactg cgcgaaaaac 481 gtttgagatc aaaacagcgc gcagcgaaaa caaatcaaat cggaataaat gggccaagaa 541 tttagtgcga tttccttttt tttactgtga gcccccagaa gatatacaca aaccaaatat 601 atatacataa atcccattcg cgatgacgca cttgatgggt cccacggagt gtgccagcgc 661 catgatgacc acctcgatgc agttcctgga caccagcctc ccggattaca actgctacgc 721 caacgactac tggacctcgc cctacatgac cggcggcctc agtcccatga agcagatcga 781 agcctgcatc cagacagctg gcaaggatcg cagttcgtac aagccgctgg agcagatcga 841 tgccaagttg gcggacatcg agacgcacag tacaggtagc actggcaccg cgaacagcag 901 cagcagcagc ctctctagcg gcaatcccat ctccaattcc aatgcgaatg ccagttgcca 961 ggagcagtcc tcgtccctcc ttcaaagcga ttatcccggc ggcaacagtg aagcctcgac 1021 ggcagcaacc tcctccgatg gcacgacggc agcaggatcg acggcagcgg gaggaggaag 1081 tgcatcgacg ggatccaaga agctcaaggg acaacacaaa aaagacaaca gcattgggga 1141 caataataca gggaaagcca gcagcaatat tagcaaaggg gactcggagc cagtgcatcc 1201 atcgctcgcc caggctatcg tggtgctgga gacgaaggcg ctgtgggatc agttccacgc 1261 ccagggcacc gagatgatca tcaccaagac gggccgtcgg atgtttccca cctttcaggt 1321 gaggatcggc ggacttgatc cgcacgctac ctacatctgc atgatggatt tcgtgcccat 1381 ggatgacaag cggtatcgct acgcgttcca taattcctgc tgggtggtgg ctggcaaggc 1441 ggatcccatc tccccgccca ggattcacgt gcatcccgac tcacctgccg ccggttccaa 1501 ttggatgaaa cagatcgtgt cctttgacaa gctaaagctc acaaacaatc aactcgacga 1561 aaatggccat atcattctga actcaatgca tcgctatcag ccccgattcc atttggtgta 1621 cttgccaccg aagaacgcgt ccttagatga gaacgagcac tccagccact tccgcacttt 1681 tatctttcca gagacgagct ttacggccgt aactgcctac cagaatcagc gggtgacaca 1741 gcttaagatc tccagcaatc cattcgccaa aggctttcgg gatgatggca ccaatgatgt 1801 aacctctggc ggtggcagca gcatgtcctc catgagccac gaaagtcagg ctcgcatgaa 1861 gcaacagcag cagcagcaac aacagcaact gcaacagcag cagcagcagc aacaacagca 1921 gcaactcaag gagcgatcgg cggcaacaag caacttcagc ctgagttgca ccgagttgtc 1981 cgttgtggag cagcagcaac agcagcaggc gggagtcctg caactgccgg ccacgccctc 2041 cagcagctcc acctccggca actcgcccga tctgctgggc taccaaatgg agctccaaca 2101 gcagcagcaa cagcaacacc agcagcagca gcaacagcaa ccgcaccagc agcaacatct 2161 ccaccagcag caacatcagg ccaaccagca gcagtcgctg ctccagcaga gccaaaatca 2221 gacccaatac ggaagctatc accatgccta tcagccgcat cagccgcagc cccatcccct 2281 caccccgcac tccaccagct ccgcatctcc gccggcaatt gcagcgggat cgacggcaac 2341 gggtgcaaca gcaacatccg ccggcggagc gggagcaaca tcagccgttg gcacgggcgc 2401 aactcaggtg atgaccgctg ccaatattta ctcgagcatc ggtcaaccct acgcccagga 2461 acagagcaac tttggggcca tctaccatca taatgcggct gccgctgccg ccgcccacta 2521 tcaccatggc cacgcccatg cccacggcca cgcccacagc cacgggccgt atgccagcgc 2581 ctacgacaag ctgaaggtgt cgcgccacgc ggccgccgcc gcctacggca tgggggccac 2641 ctatccaagt ttctacggtt cggcggccca ccaccagatg atgcgaccca acagctacat 2701 agacctggtg ccgcgctagg aaagatcgct ggggattgca gtcctgagca gagaccattt 2761 cggtttaaat aggctaagaa ataaccttaa acttgcctgt aaaaattatt taatatccta 2821 tcgctaagat tacttcatca atatctaaaa gcacaaagta ttcctgccaa agctagatat 2881 atctgaagcc aaaaagtagt tcttaaatca agaaaccatc agttatgaat attacaaaaa 2941 ataaatatta caaaaaggct aggaaattat ttcaaatcaa aaatataggt ccaataacta 3001 gcacactaaa aatgtaaaaa caaatattct tgaaatatat aattataaat atatatataa 3061 taaaaaaaca aatccaaaat taatgtccag atataaatat cttaattgtt taaattaaaa 3121 tataacacaa acatttacat acaaaatatt ctacaatata ttcctatatt aaaaaaaaaa 3181 aattatttta ccatacaata acatccaata tttgtactac aaaatcagtg aactcgaaat 3241 aatataagga aaaatgtttt gaataaatac tcttgatttt agaa