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LOCUS XM_017160591 3328 bp mRNA linear INV 09-DEC-2024 subunit (AP-1-2beta), transcript variant X2, mRNA. ACCESSION XM_017160591 VERSION XM_017160591.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017160591.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3328 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3328 /gene="AP-1-2beta" /note="adaptor protein complex 1/2, beta subunit; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108070207" CDS 120..2897 /gene="AP-1-2beta" /codon_start=1 /product="AP-1 complex subunit beta-1" /protein_id="XP_017016080.1" /db_xref="GeneID:108070207" /translation="MTDSKYFTTTKKGEIFELKSELNNDKKEKKKEAVKKVIASMTVG KDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDSNPLI RALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDISATMVEDQG FLDQLKDLLSDSNPMVVANAVAALSEINEASQSGQPLVEMNSVTINKLLTALNECTEW GQVFILDSLANYSPKDEREAQSICERITPRLAHANAAVVLSAVKVLMKLLEMLSSDSD FCATLTKKLAPPLVTLLSSEPEVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIY VKLEKLDIMIRLANQSNIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEPSAERC VSTLLDLIQTKVNYVVQEAIVVIKDIFRKYPNKYESIISTLCENLDTLDEPEARASMV WIIGEYAERIDNADELLDSFLEGFQDENAQVQLQLLTAVVKLFLKRPSDTQELVQHVL SLATQDSDNPDLRDRGFIYWRLLSTDPAAAKEVVLADKPLISEETDLLEPTLLDELIC HISSLASVYHKPPTAFVEGRGAGVRKSLPNRAAGSAAGGEQPESGAGGSEAMVIPNQE SLIGDLLSMDINAPAMPAAPAATSNVDLLGGGLDILLGGAPAEAAPGGGGGASSLLGD IFGLGGASLSAGVQIPKVTWLPAEKGKGLEIQGTFSRRNGEVFMDMTLTNKAMQPMTN FAIQLNKNSFGLVPSSPLQAAPLPPNQSIEVSMALGTNGPIQRMEPLNNLQVAVKNNI DIFYFACLVHGNVLFAEDGQLDKRVFLNTWKEIPAANELQYSLSGVIGTTDGIASKMT TNNIFTIAKRNVEGQDMLYQSLKLTNSIWVLLELKLQPGNPDATLSLKSRSVEVANII FAAYEAIIRSP" misc_feature 231..1724 /gene="AP-1-2beta" /note="Adaptin N terminal region; Region: Adaptin_N; pfam01602" /db_xref="CDD:396262" misc_feature 270..344 /gene="AP-1-2beta" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature order(318..323,330..332,339..344,429..434,441..443, 450..455,534..539,546..548,555..560,567..569,651..656, 663..665,672..677,780..785,792..794,801..806) /gene="AP-1-2beta" /note="putative peptide binding site [polypeptide binding]; other site" /db_xref="CDD:293787" misc_feature 378..461 /gene="AP-1-2beta" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature 480..572 /gene="AP-1-2beta" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature 597..677 /gene="AP-1-2beta" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature 708..806 /gene="AP-1-2beta" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature 1296..1370 /gene="AP-1-2beta" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature 1404..1493 /gene="AP-1-2beta" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature 1512..1604 /gene="AP-1-2beta" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature 1635..1745 /gene="AP-1-2beta" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature 2238..2528 /gene="AP-1-2beta" /note="Adaptin C-terminal domain; Region: Alpha_adaptinC2; smart00809" /db_xref="CDD:197886" misc_feature 2556..2888 /gene="AP-1-2beta" /note="Beta2-adaptin appendage, C-terminal sub-domain; Region: B2-adapt-app_C; smart01020" /db_xref="CDD:198088" polyA_site 3328 /gene="AP-1-2beta" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ccccggcgaa cggtcgcact aattacgaag agagaaaaaa aaagctaaca attttttcag 61 tgcccgaaaa ctaattattt aaaaggtaat taaagcgagg agcagcatca tcaggcgaga 121 tgaccgattc caagtacttc accaccacca agaagggcga gatcttcgag ctcaagtcgg 181 agctgaacaa cgacaagaag gagaagaaga aggaggcggt gaagaaggtg attgcgagca 241 tgaccgtcgg caaggacgtc tcggcgctct tcccggacgt ggtcaactgc atgcagacgg 301 acaatctgga gctgaagaag ctggtctacc tctacctgat gaactacgcc aagtcgcagc 361 cggacatggc cattatggcg gtgaacacgt tcgtcaagga ctgcgaggac tcgaatccgc 421 tgatccgggc tctggccgtt cgcacgatgg gctgcatccg ggtggacaag atcaccgagt 481 atctgtgcga accgctgcgc aagtgcctga aggacgagga tccctacgtt cgcaagacgg 541 ccgccgtgtg cgtggccaag ctgtatgata tctcggccac catggtggag gatcagggct 601 tcctggacca gctgaaggac ctgctgtccg actcgaatcc catggtggtg gccaatgccg 661 tcgctgcgct cagcgagatc aacgaggcca gccaatcggg tcagccgctg gtcgagatga 721 actcggtgac catcaacaag ctgctgacgg cgctcaacga gtgcaccgaa tggggtcagg 781 tcttcatcct ggactcgctg gccaactaca gtcccaagga cgagcgcgag gcgcagtcca 841 tctgcgaaag aatcaccccg cggctggccc acgccaatgc agccgtcgtg ctgagcgccg 901 tcaaggtgct gatgaagctg ctcgagatgc tgtccagcga cagcgacttc tgcgccacgc 961 tcaccaagaa gctggccccg ccactggtca cgctgctctc ctcggagccc gaggtccagt 1021 atgtggcgct gcgcaacatc aatctgattg tccagaagcg acccgacatt ctcaagcacg 1081 agatgaaggt gttcttcgtc aagtacaacg atcccatcta cgtgaagctg gagaagttgg 1141 acattatgat acggctggcc aaccagagca acatcgccca ggtgctcagc gagctgaagg 1201 agtacgccac cgaggtggac gtggactttg tgcgcaaggc ggtgcgcgcc atcgggcgat 1261 gcgccatcaa ggtggagccc tccgccgagc gctgcgtgtc cacgctgctc gatctcatcc 1321 agaccaaggt caactatgtg gtgcaggagg ccattgtggt gatcaaggac atcttccgca 1381 agtacccgaa caagtacgag agcatcatca gcacgctctg cgagaatctg gacacgctgg 1441 acgagccgga ggcgcgcgcc tcgatggtct ggatcattgg cgagtacgcc gagcgcattg 1501 acaacgccga cgagctgctc gacagctttc tcgagggttt ccaggacgag aacgcccagg 1561 tgcagctgca gctgctgacg gccgtcgtca agctgttcct gaagcgcccc tcggacaccc 1621 aggagctggt ccagcacgtc ctctcgctgg ccacccagga ctcggacaac cccgatctgc 1681 gggaccgcgg cttcatctac tggcgcctcc tgtccaccga tccggctgcc gccaaggagg 1741 tggtgctggc cgacaagccg ctcatctcgg aggagaccga cctgctggag ccgacgctcc 1801 tagacgagct catttgccac atcagctcgc tggccagcgt gtatcacaag ccgcccacgg 1861 cgtttgttga gggtcgcggt gccggcgtgc gcaagtcgct gcccaatcgc gccgccggct 1921 cagcagctgg tggcgagcag ccggagagcg gagccggcgg ctcggaggcc atggtcatac 1981 ccaaccagga gtcgctcatc ggcgatctgc tctccatgga catcaatgca ccagccatgc 2041 ccgctgcccc ggcggccacc agcaacgtgg atctgctggg cggcggcctg gacatcctgc 2101 tgggtggagc accggcagag gcggctcccg gcggcggcgg cggtgcctcc agcctgctgg 2161 gcgacatctt cggcctgggc ggcgcctcgc tgtcggcggg cgtgcagata cccaaggtca 2221 cctggctgcc tgcggagaag ggcaagggcc tcgagataca gggcaccttc tcgcggcgca 2281 acggcgaggt cttcatggac atgacgctga ccaacaaggc catgcagccg atgaccaact 2341 tcgccatcca gctgaacaag aacagcttcg gcctggtgcc gtcgtcgccc ctccaagctg 2401 ctcccctgcc gcccaaccag tccatcgagg tgagcatggc gctgggcacc aacggaccca 2461 tccagcgcat ggagccgctc aacaacctgc aggtggccgt gaagaacaac atcgacatct 2521 tctacttcgc ctgtttggtg cacggcaacg tgctgttcgc cgaggacggg cagctggaca 2581 agcgcgtgtt cctcaacacc tggaaggaga taccagccgc caacgaactg cagtacagtt 2641 tgagcggcgt gatcggcacc accgacggca tcgcctccaa gatgaccacc aacaacatct 2701 tcaccatcgc caagcgcaac gtcgagggcc aggacatgct gtatcagtcg ctcaagctga 2761 ccaacagcat ctgggtgctg ctggagctca agctgcagcc gggcaacccg gacgccacgc 2821 tcagcctgaa gtcgcgctcc gtggaggtgg ccaacatcat cttcgccgcc tacgaggcca 2881 tcatccgttc gccctaagcg ctccacgggg gataaatggt cagataggtc agatggtcgg 2941 acggcggacg aggagcacaa agcaatcgga gcgatcagtt tatgtgggag ccgactagag 3001 gttctctgcg ggcgtttaag attagctcaa caaaacaaat tgtaatttac gtattattat 3061 tatattgtgt gctggccact tcgccactca cattacatta tttatgcata tatgcacacc 3121 tataaaccaa tcaagtttgt cgagagaact gttaattgtt aatcggagcc gcatgtcctc 3181 catgtactgt aacgtatgta aaacggtagc gaaatctgcg ccccggctaa cgttgcgtaa 3241 tcgcattcca aaactctgta accctcatat gcacggcatc tatgtacatg tacgtgtcct 3301 agtaaaatgt atgacataac acactaaa