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LOCUS XM_017160590 3325 bp mRNA linear INV 09-DEC-2024 subunit (AP-1-2beta), transcript variant X1, mRNA. ACCESSION XM_017160590 VERSION XM_017160590.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017160590.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3325 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3325 /gene="AP-1-2beta" /note="adaptor protein complex 1/2, beta subunit; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108070207" CDS 117..2894 /gene="AP-1-2beta" /codon_start=1 /product="AP-1 complex subunit beta-1" /protein_id="XP_017016079.1" /db_xref="GeneID:108070207" /translation="MTDSKYFTTTKKGEIFELKSELNNDKKEKKKEAVKKVIASMTVG KDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDSNPLI RALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLYDISATMVEDQG FLDQLKDLLSDSNPMVVANAVAALSEINEASQSGQPLVEMNSVTINKLLTALNECTEW GQVFILDSLANYSPKDEREAQSICERITPRLAHANAAVVLSAVKVLMKLLEMLSSDSD FCATLTKKLAPPLVTLLSSEPEVQYVALRNINLIVQKRPDILKHEMKVFFVKYNDPIY VKLEKLDIMIRLANQSNIAQVLSELKEYATEVDVDFVRKAVRAIGRCAIKVEPSAERC VSTLLDLIQTKVNYVVQEAIVVIKDIFRKYPNKYESIISTLCENLDTLDEPEARASMV WIIGEYAERIDNADELLDSFLEGFQDENAQVQLQLLTAVVKLFLKRPSDTQELVQHVL SLATQDSDNPDLRDRGFIYWRLLSTDPAAAKEVVLADKPLISEETDLLEPTLLDELIC HISSLASVYHKPPTAFVEGRGAGVRKSLPNRAAGSAAGGEQPESGAGGSEAMVIPNQE SLIGDLLSMDINAPAMPAAPAATSNVDLLGGGLDILLGGAPAEAAPGGGGGASSLLGD IFGLGGASLSAGVQIPKVTWLPAEKGKGLEIQGTFSRRNGEVFMDMTLTNKAMQPMTN FAIQLNKNSFGLVPSSPLQAAPLPPNQSIEVSMALGTNGPIQRMEPLNNLQVAVKNNI DIFYFACLVHGNVLFAEDGQLDKRVFLNTWKEIPAANELQYSLSGVIGTTDGIASKMT TNNIFTIAKRNVEGQDMLYQSLKLTNSIWVLLELKLQPGNPDATLSLKSRSVEVANII FAAYEAIIRSP" misc_feature 228..1721 /gene="AP-1-2beta" /note="Adaptin N terminal region; Region: Adaptin_N; pfam01602" /db_xref="CDD:396262" misc_feature 267..341 /gene="AP-1-2beta" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature order(315..320,327..329,336..341,426..431,438..440, 447..452,531..536,543..545,552..557,564..566,648..653, 660..662,669..674,777..782,789..791,798..803) /gene="AP-1-2beta" /note="putative peptide binding site [polypeptide binding]; other site" /db_xref="CDD:293787" misc_feature 375..458 /gene="AP-1-2beta" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature 477..569 /gene="AP-1-2beta" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature 594..674 /gene="AP-1-2beta" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature 705..803 /gene="AP-1-2beta" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature 1293..1367 /gene="AP-1-2beta" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature 1401..1490 /gene="AP-1-2beta" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature 1509..1601 /gene="AP-1-2beta" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature 1632..1742 /gene="AP-1-2beta" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature 2235..2525 /gene="AP-1-2beta" /note="Adaptin C-terminal domain; Region: Alpha_adaptinC2; smart00809" /db_xref="CDD:197886" misc_feature 2553..2885 /gene="AP-1-2beta" /note="Beta2-adaptin appendage, C-terminal sub-domain; Region: B2-adapt-app_C; smart01020" /db_xref="CDD:198088" polyA_site 3325 /gene="AP-1-2beta" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 agtcactccc cggcgaacgg tcgcactaat tacgaagaga gaaaaaaaaa gctaacaatt 61 ttttcagtgc ccgaaaacta attatttaaa agcgaggagc agcatcatca ggcgagatga 121 ccgattccaa gtacttcacc accaccaaga agggcgagat cttcgagctc aagtcggagc 181 tgaacaacga caagaaggag aagaagaagg aggcggtgaa gaaggtgatt gcgagcatga 241 ccgtcggcaa ggacgtctcg gcgctcttcc cggacgtggt caactgcatg cagacggaca 301 atctggagct gaagaagctg gtctacctct acctgatgaa ctacgccaag tcgcagccgg 361 acatggccat tatggcggtg aacacgttcg tcaaggactg cgaggactcg aatccgctga 421 tccgggctct ggccgttcgc acgatgggct gcatccgggt ggacaagatc accgagtatc 481 tgtgcgaacc gctgcgcaag tgcctgaagg acgaggatcc ctacgttcgc aagacggccg 541 ccgtgtgcgt ggccaagctg tatgatatct cggccaccat ggtggaggat cagggcttcc 601 tggaccagct gaaggacctg ctgtccgact cgaatcccat ggtggtggcc aatgccgtcg 661 ctgcgctcag cgagatcaac gaggccagcc aatcgggtca gccgctggtc gagatgaact 721 cggtgaccat caacaagctg ctgacggcgc tcaacgagtg caccgaatgg ggtcaggtct 781 tcatcctgga ctcgctggcc aactacagtc ccaaggacga gcgcgaggcg cagtccatct 841 gcgaaagaat caccccgcgg ctggcccacg ccaatgcagc cgtcgtgctg agcgccgtca 901 aggtgctgat gaagctgctc gagatgctgt ccagcgacag cgacttctgc gccacgctca 961 ccaagaagct ggccccgcca ctggtcacgc tgctctcctc ggagcccgag gtccagtatg 1021 tggcgctgcg caacatcaat ctgattgtcc agaagcgacc cgacattctc aagcacgaga 1081 tgaaggtgtt cttcgtcaag tacaacgatc ccatctacgt gaagctggag aagttggaca 1141 ttatgatacg gctggccaac cagagcaaca tcgcccaggt gctcagcgag ctgaaggagt 1201 acgccaccga ggtggacgtg gactttgtgc gcaaggcggt gcgcgccatc gggcgatgcg 1261 ccatcaaggt ggagccctcc gccgagcgct gcgtgtccac gctgctcgat ctcatccaga 1321 ccaaggtcaa ctatgtggtg caggaggcca ttgtggtgat caaggacatc ttccgcaagt 1381 acccgaacaa gtacgagagc atcatcagca cgctctgcga gaatctggac acgctggacg 1441 agccggaggc gcgcgcctcg atggtctgga tcattggcga gtacgccgag cgcattgaca 1501 acgccgacga gctgctcgac agctttctcg agggtttcca ggacgagaac gcccaggtgc 1561 agctgcagct gctgacggcc gtcgtcaagc tgttcctgaa gcgcccctcg gacacccagg 1621 agctggtcca gcacgtcctc tcgctggcca cccaggactc ggacaacccc gatctgcggg 1681 accgcggctt catctactgg cgcctcctgt ccaccgatcc ggctgccgcc aaggaggtgg 1741 tgctggccga caagccgctc atctcggagg agaccgacct gctggagccg acgctcctag 1801 acgagctcat ttgccacatc agctcgctgg ccagcgtgta tcacaagccg cccacggcgt 1861 ttgttgaggg tcgcggtgcc ggcgtgcgca agtcgctgcc caatcgcgcc gccggctcag 1921 cagctggtgg cgagcagccg gagagcggag ccggcggctc ggaggccatg gtcataccca 1981 accaggagtc gctcatcggc gatctgctct ccatggacat caatgcacca gccatgcccg 2041 ctgccccggc ggccaccagc aacgtggatc tgctgggcgg cggcctggac atcctgctgg 2101 gtggagcacc ggcagaggcg gctcccggcg gcggcggcgg tgcctccagc ctgctgggcg 2161 acatcttcgg cctgggcggc gcctcgctgt cggcgggcgt gcagataccc aaggtcacct 2221 ggctgcctgc ggagaagggc aagggcctcg agatacaggg caccttctcg cggcgcaacg 2281 gcgaggtctt catggacatg acgctgacca acaaggccat gcagccgatg accaacttcg 2341 ccatccagct gaacaagaac agcttcggcc tggtgccgtc gtcgcccctc caagctgctc 2401 ccctgccgcc caaccagtcc atcgaggtga gcatggcgct gggcaccaac ggacccatcc 2461 agcgcatgga gccgctcaac aacctgcagg tggccgtgaa gaacaacatc gacatcttct 2521 acttcgcctg tttggtgcac ggcaacgtgc tgttcgccga ggacgggcag ctggacaagc 2581 gcgtgttcct caacacctgg aaggagatac cagccgccaa cgaactgcag tacagtttga 2641 gcggcgtgat cggcaccacc gacggcatcg cctccaagat gaccaccaac aacatcttca 2701 ccatcgccaa gcgcaacgtc gagggccagg acatgctgta tcagtcgctc aagctgacca 2761 acagcatctg ggtgctgctg gagctcaagc tgcagccggg caacccggac gccacgctca 2821 gcctgaagtc gcgctccgtg gaggtggcca acatcatctt cgccgcctac gaggccatca 2881 tccgttcgcc ctaagcgctc cacgggggat aaatggtcag ataggtcaga tggtcggacg 2941 gcggacgagg agcacaaagc aatcggagcg atcagtttat gtgggagccg actagaggtt 3001 ctctgcgggc gtttaagatt agctcaacaa aacaaattgt aatttacgta ttattattat 3061 attgtgtgct ggccacttcg ccactcacat tacattattt atgcatatat gcacacctat 3121 aaaccaatca agtttgtcga gagaactgtt aattgttaat cggagccgca tgtcctccat 3181 gtactgtaac gtatgtaaaa cggtagcgaa atctgcgccc cggctaacgt tgcgtaatcg 3241 cattccaaaa ctctgtaacc ctcatatgca cggcatctat gtacatgtac gtgtcctagt 3301 aaaatgtatg acataacaca ctaaa