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LOCUS XM_017160577 4509 bp mRNA linear INV 09-DEC-2024 mRNA. ACCESSION XM_017160577 VERSION XM_017160577.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017160577.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4509 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4509 /gene="LOC108070196" /note="RRP12-like protein; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108070196" CDS 102..4244 /gene="LOC108070196" /codon_start=1 /product="RRP12-like protein" /protein_id="XP_017016066.2" /db_xref="GeneID:108070196" /translation="MGKFRSKLKRHGKGKTWGKGQSATSNPDQMKHRLKAKSRFFQPN LSLAAATPTGLTLEAVHKHEQRQAFNAETTTVNEVAGSLRSFRLDDEEDMSESGGTAP SGTYKTFQTFASNYSSCSNTSFRKLLTGFRASSDLHKEMLAILSALTEIIRESGGGET STEYFLLLMEQIEAASEERDIVAGVALLSMGIKSVPAAVLRKRFAQTAATMQALLQRF VEATNQSVIRYVIGCLSVLLRAQDYATWTYSSTFQYFDALLAFSIHSKPKIRKAAQHA VVSIIHGSCFMLPLAKSDEDQEEKEQPKVKNHPASSRVTKFCLAQFKPEVLANAQTTV LHTLALLKDTLAGFRTEDIRSVCEHLLSIMTAANVLVRTNCFQALHALFLTRSPNLNA SLCAKLLAAIHEYRPDRSDVRQTLAWVTVLKEGHLHLATLQLDLCMQALPRLVEICTT DLWLSERTELVVGVSNCIKELLQDCVARACATEEEAQRSRPSVARIIGSLHKVLNAPF GEISKYVILIFSIVFEACGRQFGKELTPSLLTIAKRYDSQSGHRLQIEHTLISAIKAL GPELILTAIPLADGKGGMQLERSWLLPLLREGAHGASLQFFREKIVPLAMDCQQKWKE FSEAKNKSSSHIYELLCCQLWGLFPGFCRRPRDPEYLRQLAPTLGAALEKNPEFRAPI YDGLMELLDESQSAECHQAIGQYAKNFLPRLFNIYTQKPSGTYEADQRKRVLDVIRLY ISRAPADVQLQLFENAQGQLAASAVASFEYDALFDINAAIVRVQKCKGIEAYFEKYMA PILRNDKSKLVAKDEQKLKKQQRKTYELLRELMTSELASCQKFTRKNSIALQQILLEA FTTSCNVCQASRLYCLKSLMECRSNLSYNDQLVMKAIPEAVLSYKEFSTRKEQVAEQL IKSITQLYQDAGKINDFVDILTAGFTGDESLVTNTILAFRAVLQQQGQHLTVATLEFV LQQVSVFLVQKSRNQSEAAVAFLITFIKVMPIPLVANHLETIMRSLSAMTKDTKRYCR IQIGYFLKKLCKRFSTEELARFVPGDDEVTHRRLKKIRKQMRRDTRKKQSEEAQADSS DEELVGGLEQKSYTIDDILADSDSDLPEDMDAEDESGVAGKREKKSKQKKSTYIREDP DEIVDLADLKSIGNVLTSGSAQAAATAKSLKTKPQLPNGGFKTADDGRLIISDKALRG QRGGGGGGGDDESDSDSDSDASMGEAGGAAKEPKAKRGMEEDSSDEEELQQQQSKAAK RTRKAGDAMSMKSGKTTASSRYTAGGKGIHRQLAGGQSDAMSVKSGKSAGNEYSSKKA KGDMKKRGQLDPYAYIPLTRNNLNKRKRSLNSRKFKSVLRGAGGEGGGGGGGGRVSKK YK" misc_feature 1587..2174 /gene="LOC108070196" /note="NUC173 domain; Region: NUC173; pfam08161" /db_xref="CDD:462386" polyA_site 4509 /gene="LOC108070196" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tttatcggta aagcgggtac tcttcgcacg tgttgcgatt tgcgtgtttt gggttttcgg 61 gcactttctt tcgagcattt ctcgctttac tcgcactgac catgggcaaa ttccgttcga 121 agctaaagcg ccatgggaag gggaagacgt ggggcaaggg ccagtcggcc acctcgaatc 181 ccgaccagat gaagcaccgc ctgaaggcca agtcgcgttt cttccagccc aacctgagtt 241 tggccgctgc cacgcccacc ggcctcaccc tggaggcggt gcacaagcac gagcagcgcc 301 aggcgttcaa tgcggagacc acgacggtca acgaagtggc cggcagcctg cgaagcttcc 361 ggctggacga cgaagaagac atgtcggaat cagggggcac cgcacccagc ggcacctaca 421 agaccttcca gaccttcgcc tccaactaca gcagctgcag caacacgagc ttccgcaagc 481 tgctcaccgg cttccgggcc tcctcggatc tgcacaagga gatgctggcc attttgagcg 541 ccctcaccga gataatccgc gagagcggcg gcggcgagac gtccacggag tacttcctgc 601 tgctcatgga gcagatcgag gcggccagcg aggagcggga cattgtggcc ggcgtggcgc 661 tgctctccat gggcattaaa tcggtgccgg ctgcggtgct gaggaagcgt ttcgcccaga 721 cggcggccac catgcaggcg ctgctccagc ggttcgtgga ggccaccaac cagtcggtga 781 ttcgctatgt cattggctgc ctgtccgtgc tgctgcgtgc ccaggactac gccacctgga 841 cgtacagctc cacgttccag tacttcgatg ccctgctggc cttcagcatt cactccaagc 901 ccaagatccg caaggcggcc cagcatgcgg tggtctctat catacacggc agctgcttca 961 tgttgccatt ggctaagtct gatgaggatc aggaggagaa ggagcagccg aaggtgaaga 1021 accaccctgc cagcagccgg gtgaccaagt tctgcctggc ccagttcaag ccggaggtgc 1081 tggccaatgc ccagacgacg gtgctccaca cattggccct gctcaaggac actctagctg 1141 gcttccgcac ggaggacata cgcagcgtgt gcgagcacct gctctccatc atgacggcgg 1201 ccaatgtgct ggtgcgcacg aactgcttcc aggcgctgca cgccctcttc ctcacgcgca 1261 gcccgaatct gaatgcctcg ctgtgcgcca agctgctggc ggccatccac gagtatcggc 1321 cggatcgcag cgatgtccgg cagacgctcg cctgggtgac tgtcctgaaa gagggccacc 1381 tgcacctggc caccctgcag ctggatctgt gcatgcaggc gctgccccgc ctcgtagaga 1441 tctgcaccac ggacctctgg ctctcggagc gaacggaact ggtggtgggc gtttcgaact 1501 gcatcaagga gctgctgcag gactgcgttg cgcgtgcctg tgccaccgag gaggaggccc 1561 agcgcagcag gcccagtgtg gccaggataa tcggatcgct gcacaaggtc ctgaacgctc 1621 ccttcggcga gatctccaaa tatgtgatcc tcatcttctc cattgtcttt gaggcctgcg 1681 gcaggcaatt cgggaaagaa ctcactccct cgctgctcac aatcgccaag cgctacgaca 1741 gccagagcgg ccatcgcctg cagatcgagc acacgctgat cagcgccatc aaggctctgg 1801 gacccgaact catcctcacc gcgattccac tggccgacgg caagggcggc atgcagctgg 1861 agcgttcctg gctgctgccc cttttgcgcg agggagccca cggcgccagt ctgcagttct 1921 tcagggagaa gatcgtgccg ctggccatgg actgccagca gaagtggaag gagttcagcg 1981 aagcgaagaa caagtcatcg tcgcacatct acgagctgct ctgctgccag ctgtggggcc 2041 tctttcccgg tttctgtcgc cgcccaaggg atccggagta cctgcgccag ctggccccca 2101 ctttgggtgc cgccctggag aagaatcccg agttcagggc ccccatttac gatggtctga 2161 tggagctgct cgacgagagt cagagtgcgg agtgccatca ggcgattggc cagtatgcca 2221 agaacttttt gccccgtctg tttaatatct acacccagaa accgagtgga acttacgagg 2281 cggatcagcg gaagcgcgtg ctggacgtca tccgcttgta tatctcaagg gcgccggctg 2341 atgtgcaact gcagctcttc gagaacgccc agggacagct ggcggccagt gcggtggcca 2401 gtttcgagta cgacgccctg ttcgacatca atgcggccat tgtgcgcgtg cagaagtgca 2461 agggcatcga ggcgtacttc gagaagtaca tggcacccat tctgcggaac gacaagtcca 2521 agttggtggc caaggatgag cagaagctga agaagcagca gaggaagacc tacgagctcc 2581 tgcgggaact gatgacctcg gagctggcgt cttgccagaa gttcacccgc aagaacagca 2641 tcgccctgca gcaaatcctg ctggaagcct tcaccaccag ctgcaatgtc tgccaggcct 2701 cgcgattgta ctgcctgaaa tccctgatgg agtgccgcag caacctgtcg tacaacgatc 2761 agctggtgat gaaggccatt cccgaggcag tgctcagcta caaggagttc tccacgcgca 2821 aggagcaggt ggccgagcag ctaatcaaat cgatcaccca gctgtaccag gatgcgggca 2881 agatcaatga ctttgtggac atattgacgg ccggctttac tggcgacgaa tcgctggtga 2941 ccaacacgat cctcgccttt cgggcggtgc tccagcagca gggacagcat ctcacagtgg 3001 ccacgctcga gttcgtcctg cagcaggtct ccgtcttcct cgtccagaag tcgcgcaatc 3061 aatcggaggc agccgtcgcc tttctgatca ccttcatcaa ggtgatgccc atacccctgg 3121 tggccaatca cctggaaacg attatgcgct ccctgtccgc catgaccaag gacacgaagc 3181 gctactgccg catccagatc ggctacttcc tgaagaagct ctgcaagcgc ttcagcaccg 3241 aggagctggc ccgcttcgtg cccggcgacg acgaggtgac ccaccggcgg ctcaagaaga 3301 tccgcaagca gatgcgccgg gatacgcgca agaagcagag cgaggaggcc caggcggata 3361 gctccgacga ggagctagtt ggcggtctgg agcagaagag ctataccatc gatgacattc 3421 tggctgactc cgactcggat ctgcccgagg atatggacgc cgaggatgaa agcggagtag 3481 ctggcaagcg ggagaagaag tccaagcaga agaagagcac ttacatacgc gaggatcccg 3541 atgagattgt cgatttggcc gatctcaagt ctattggcaa tgttttaact agtggctctg 3601 ctcaagcggc tgccaccgcc aagagcctga agacgaagcc ccagctgccc aacggcggct 3661 tcaagacggc cgacgacgga cgcctgatca tcagcgacaa ggctctgcgc ggccaacgag 3721 gaggaggagg aggcggcggc gacgatgagt ccgactcgga ctccgattcc gatgcatcga 3781 tgggcgaagc tggaggagcg gctaaggagc ccaaggccaa gcgcggaatg gaggaggatt 3841 ccagcgacga ggaggagctg cagcagcagc aatcgaaggc cgccaagcgg acgcgcaagg 3901 cgggcgatgc gatgagcatg aagtccggca agacgacggc cagcagtcgc tacacagccg 3961 gcggcaaggg catccatcgc cagctggccg gtggccaatc ggatgccatg tcagtgaagt 4021 cgggcaagtc ggctggcaat gagtacagca gcaaaaaggc caagggcgac atgaagaagc 4081 gcgggcaact ggatccgtat gcgtacatac cgctcacaag gaataacctg aacaagagaa 4141 agcgttcgct gaactcaagg aaatttaaga gcgtcttgcg aggagcaggc ggtgaaggag 4201 gaggaggagg aggcggcggt cgggtgtcca agaaatacaa atagagaggc cactaactgg 4261 atcgtaaagc tatagagata taatataacg actggatagt gcggactgct gataagcaag 4321 ccgagacgtt gatgattatt tcccttccct gttaccttgc ttaaatatat aaatataatt 4381 aattatgtat gcttgcggag ggggttgtaa atgccagaga taaactaaag cgaaaacaga 4441 atagtcgggt attaagtgac tatgaataaa agtggaaaat gtagcctaca ttatatggtt 4501 aatagttaa