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LOCUS XM_017160548 5060 bp mRNA linear INV 09-DEC-2024 transcript variant X1, mRNA. ACCESSION XM_017160548 VERSION XM_017160548.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017160548.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5060 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5060 /gene="NFAT" /note="NFAT nuclear factor; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108070182" CDS 382..4764 /gene="NFAT" /codon_start=1 /product="nuclear factor of activated T-cells 5 isoform X1" /protein_id="XP_017016037.2" /db_xref="GeneID:108070182" /translation="MRFTYNQYKHYESGYRIPSKMHNLSHHNSNNNNNNTNNNNSNNN NGGGHNNNNSHHYAHHNNNNNGGNNNTNFQAYQHHYKSNFGMRMTMSTNSTMSARIHR KGFRIPSKRQPGKGLPGKLHTITRAGPGKIVPGKRIPQRPHPPPCDNSNDSGLGFDQH TELRSSGGGGGGGVADPAVNGGGSGANSAQRSNLLVNSALTNTVAAAAAAAAAAVASN TLQQHQQHHQQQQQQQQQQQQQQQQQQQQQQQQHSPQQHLIRAIPVSRSRHDKKMMGH YLEDLDLVSASSSEDSAASTPPGVLDEDTGFVNDSNSTTIGGNSNSDPFGGVFQATEA AVAAAVNAFTLQQQQQQQQHQVQQQQQFQYNGLLLQQQQQHHQQQQHHHHHHHHRHGK HIKRKKFECNQVELDNDDACSEDEFIRKIASSVAVASGTVADATPPVAAPAPATPTVS LLPRISSSNNSNSNNNETKFISARTVTRVANKRQPTTPLNSIASSNDGQVQLEIVSQP EQQHRARYQTEGSRGAVKDRSGNGFPIVRLAGYDKGAVLQVFIGTDIGRVAPHMFYQA CKVAGKNSTQCNEKKVDGTMVIEIDFKPETDMTVTCDCVGILKERNVDVEHRFPEHLA QKNKKKSTRCRMVFRTQLTRDDGTTETLQVCSNPIICTQPPGVPEICKKSLNSCPVDG GLELFIIGKNFLKDTHVVFQETYDSVNGDDPATEIAVRQQLIGGTAALWEQSVLPDKE YLHQTHLICTVPPYLHQSILKPVQVQVSIVSSGKKSEPHTFTYTPKGQYTTLAAASTL SNTIHAQDVSGFMDTTAASASSGSSSGGPWSGPAANPGDNVEAKHEIDSGMMPPPITT QIPMGVRRSSLPSVTPMITDQQLVHLSAVASAEALKTELLDDGNSHSPLTGESTPDSP NAALQYHRFAHRKPSLDTIMYDQSNSLPGFPAVVAPATAAAVAAAVDIDPAAVAVAVE LAVKNEIVKHVVQQHQQMQEQMQEQQQQQQQQQQQQQQQQQQQQPQQQQQQQQQQQVH KFIDELTKSTSVVTSNGTSEPALFTTSAVIDHALTDILQAKVGIAPPNVVLERSLSLS STNSNSSMSGGSESSPNSSPLTQDIILNSEPAAALAGAAALGGPAPVDVVTGGLSTDI IMNPAVSPSTILCSANGAATAVVPNILAPHQVTMANSILNDIAMQPEPTQQDAAVAAL ALSNIMMSPPTAVVASGVGVVDTLPPTPAAMQPEVAATATSTAVSNMIIKAAADFITT QEQEQEQHNYHHRVHSHSPQAAVGVSGNPAETASDPLVNLLLNHSSTPETAAAAAAAV AVEAANFQSMGHSHHAMNHSHHGHSHSHPHSHSHGHHHGHHHGHHLPVVPPTPQESLI VALASENALQKSVATAAVTTNGAVMTQQASAPNTAGSILPAAVGAVAAAAAVAVQPPI PQELTTMSDQDLISYINPSTFDQL" misc_feature 1879..2370 /gene="NFAT" /note="N-terminal sub-domain of the Rel homology domain (RHD) of tonicity-responsive enhancer binding protein (TonEBP); Region: RHD-n_TonEBP; cd07882" /db_xref="CDD:143642" misc_feature order(1918..1920,1927..1929,1933..1950,2206..2208, 2212..2217,2269..2271,2275..2277,2368..2370) /gene="NFAT" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:143642" misc_feature 2380..2736 /gene="NFAT" /note="Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor...; Region: IPT; cl15674" /db_xref="CDD:472823" polyA_site 5060 /gene="NFAT" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 caggcagata aatacaacaa ctaaaactgc agaaaacatt taacaacaaa caaaaaagca 61 acaacaaaca aatgtacaaa gccaatccaa aagtaaaata attaaattaa acacacaaac 121 atacaaaaaa gaaaaacaag aaacaattaa atgtgccaac aatatttagc aagtaaacaa 181 aaaacaatat aagtcaaagg gaaaacaaga aaatcgatgc ctgtaaacat aattataaaa 241 tatactaaaa gcacttatcc caaaaagaga acgagaagct cgaggagaga gtagaaagag 301 tgaaagaaca ctgagcaaaa ataaattaat tgcgtagcca taggagtaaa ttaatcgaaa 361 gtccagtgag aatcaatcaa aatgcgcttc acctacaatc agtataaaca ttacgaatcc 421 ggttatcgga ttccatcgaa aatgcataat ctgagccacc ataatagcaa caacaataat 481 aataacacca acaacaacaa tagtaataac aataatgggg gtggccacaa caacaacaat 541 agccatcatt atgcccatca caacaacaac aataacggcg gcaacaacaa cacaaatttt 601 caagcctatc agcatcatta caaaagcaat tttggcatga ggatgaccat gtccacgaat 661 tccacaatga gtgcgcgaat acatcggaag ggatttcgca taccatcgaa aagacagccg 721 ggtaagggat tgcccggcaa gttgcatacc atcaccaggg cgggtcccgg aaagatagtt 781 cctgggaagc gaataccaca acgaccccat ccgccgccct gcgacaactc caacgacagt 841 ggccttggct tcgatcagca cacggagctg aggtcctcgg gcggaggcgg gggcgggggc 901 gtggccgatc ctgcggtcaa tggaggaggc agtggcgcca actccgccca gcggtccaac 961 ttgctggtca atagcgctct aaccaacaca gtggctgctg cggcagccgc ggcagctgct 1021 gcagtggcca gcaacacgtt gcagcaacat cagcagcacc accagcaaca gcagcagcaa 1081 cagcagcagc agcaacaaca gcagcaacag cagcagcaac aacaacagca gcaacattca 1141 ccgcagcagc atttaatacg agcgatacct gtatcaagat cgcggcacga caagaaaatg 1201 atgggtcact atctggagga tctggacctc gtgtcggcgt cctcctcgga ggactcggca 1261 gcctcgacgc cgccgggcgt cctggacgag gacacgggct ttgtgaacga cagcaattcg 1321 acgaccatcg gtggcaatag caactcggat ccctttggag gcgttttcca ggccaccgaa 1381 gcagccgtgg cagcggcggt aaatgccttc accctgcaac agcagcagca gcagcagcaa 1441 catcaggtgc aacagcagca acagtttcag tacaacggat tgctgttgca gcaacagcag 1501 caacatcacc agcagcagca acatcatcac catcatcatc atcatcgaca tggcaagcac 1561 atcaaacgca agaagttcga gtgcaatcag gtggaactgg acaacgatga tgcctgcagc 1621 gaggatgagt ttatccgcaa gattgccagt tcggtggctg tggcatcggg tacagtggca 1681 gatgccacgc cccctgtggc cgcccccgca cctgccacgc ccactgttag cctcctgccg 1741 cgcatcagca gcagcaacaa cagcaacagc aacaacaatg agacaaaatt catatcggcc 1801 aggactgtca cccgggtggc caacaagcgg cagccgacga cgccgctgaa cagcatcgcc 1861 agctccaacg acggccaggt gcagctggag atcgtctcgc agccggagca gcagcaccgg 1921 gcccgctacc agacggaggg cagccgggga gccgtcaagg atcgcagcgg caacggattc 1981 cccatcgttc ggctcgccgg ctacgacaag ggcgccgttc tgcaggtctt catcggcacc 2041 gacattggcc gcgtggcacc gcacatgttc tatcaggcct gcaaggtcgc cggcaagaac 2101 tcgacgcagt gcaacgagaa gaaggtcgac ggcaccatgg tcatcgagat cgatttcaag 2161 cccgaaacgg acatgaccgt cacctgcgat tgcgttggca tcttgaagga acgcaatgtg 2221 gatgtggagc accggtttcc ggagcatctg gcgcagaaga acaagaagaa gtcgacccgc 2281 tgccgcatgg tgttccgcac tcagctgacc cgcgacgatg gcaccaccga gaccctgcag 2341 gtctgctcga atcccatcat ctgcactcaa ccacctggcg taccggagat atgcaagaaa 2401 tcattgaact cgtgtcccgt tgacggcggc ctcgagctat tcatcatcgg caagaacttc 2461 ctgaaggaca cgcacgtggt gttccaggag acctacgaca gcgtcaatgg cgacgatccg 2521 gccaccgaga tagcagtgcg ccagcagctc atcggcggga ccgccgccct ttgggagcag 2581 agcgttctgc cggacaagga gtatctccac cagacccatt tgatttgcac cgtgccgccg 2641 tatctgcacc agagcatcct gaagcccgtc caggtgcagg tctccattgt ctcgagcggc 2701 aagaagagcg agccgcacac gttcacctac acgcccaagg gacagtacac gacgctggcg 2761 gcggccagca cgttaagtaa cacaatccac gcccaagatg tgagcggttt catggacacc 2821 accgcggcgt ccgcttcgag tggctcctcc tctggtggcc cctggagcgg tccagccgcc 2881 aatcccggcg acaatgtgga ggccaagcac gagatcgact cgggaatgat gccgccgccg 2941 atcaccaccc agataccgat gggcgtgcgc cgctcctcgc tgcccagcgt gacgcccatg 3001 atcacggacc agcagctggt ccacctgagt gcggtggcca gtgcggaggc gctgaagacg 3061 gagctcctgg acgacggcaa ttcgcatagt cccctgacag gggaatccac gccggatagt 3121 ccgaatgcag cgctgcagta tcatcgcttt gcccatcgaa agcccagcct ggataccatc 3181 atgtacgatc agtccaacag cttgcccggt ttcccggccg tcgtggctcc cgcaacagca 3241 gccgctgtgg ccgccgccgt ggatatcgat cccgctgccg tcgccgtggc cgtggaactg 3301 gccgtcaaga acgagattgt caagcatgtg gtgcagcagc atcagcagat gcaggagcaa 3361 atgcaggagc agcagcagca gcagcaacag cagcaacagc agcagcaaca gcagcagcag 3421 cagcagcaac cccagcagca acagcaacag cagcagcagc aacaggtgca caaattcatc 3481 gatgagctga ccaaatccac ttcagtggtc accagcaatg gcaccagtga accggcgctc 3541 ttcaccacct cggcggtgat tgatcacgcc ctcaccgata ttctgcaggc caaggtgggc 3601 attgcaccgc cgaatgtggt gctcgagagg agcctatccc tgagctccac aaactctaac 3661 agttcaatga gcggcggcag cgagagttcg cccaacagtt cgccgctcac ccaggatatc 3721 atactcaatt cagagcccgc cgcagctctc gccggagcag ctgccttggg cggaccggcg 3781 cccgtggatg tggtgaccgg tggcctgtcc accgacatca tcatgaatcc cgccgtctcg 3841 ccctcgacga ttctgtgctc ggccaatgga gcagctactg cggtggtgcc taatatcctg 3901 gctccccacc aggtgaccat ggccaattcg atactgaacg acattgccat gcagccggag 3961 cccacgcagc aggatgcagc ggtggccgcc ttggcgctga gcaacatcat gatgagtcca 4021 ccgacggcgg tggtggcgtc gggcgtcgga gtggtggaca ctttgccgcc gacgccggcg 4081 gccatgcagc ccgaggtggc ggccacagcg acgtcgacgg cggtgagcaa catgatcatc 4141 aaggcggcgg cggactttat aaccacgcag gagcaggaac aggagcagca taactaccat 4201 catcgcgtcc attcgcattc gccgcaggcg gccgtcggcg ttagcggcaa tccggcggag 4261 acggcctcgg atccgctggt caatctgctg ctgaatcact cgagcacacc ggaaacagcg 4321 gccgcagccg ccgcagcggt ggccgtggag gcggccaact ttcagtcgat gggccacagc 4381 caccacgcca tgaatcacag ccaccacggg catagtcaca gtcaccccca tagtcacagt 4441 catggtcacc atcatggcca ccatcatggc caccacttgc cggtggtgcc gccgacacca 4501 caagaatctc tgatcgtagc gctggccagc gagaatgcgc tgcaaaagtc ggtggccacc 4561 gccgcggtga ccaccaacgg ggcggtgatg acgcagcagg cgtcggcacc gaacaccgcc 4621 ggcagcatcc tgcccgcggc ggtgggagcg gtggctgcgg cggccgccgt ggcggtacag 4681 ccgcccattc cccaggagct gaccacgatg tcggatcagg atttgatcag ctacatcaat 4741 ccgagcacct tcgatcagct ttaaacggct tcagatcaac aaattaaact acgtggactt 4801 gttttttttt taattaacaa taaatgtcac tcctacacag gcttagtctt aagtatatat 4861 gtagtatata gacacacaca aacacaaaca caaacgataa ggtttcatgt ggaccaactt 4921 tttgaccaag tggatggttt aaaatcggga gaagaaagcg aaaaaaccac taacacacac 4981 acacaaacac acattagtag ctgtagcttt gtttttacat ttaggaataa accctacctt 5041 atatggaata cctacattta