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LOCUS XM_017160499 5273 bp mRNA linear INV 09-DEC-2024 transcript variant X2, mRNA. ACCESSION XM_017160499 VERSION XM_017160499.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017160499.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5273 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5273 /gene="Met" /note="Methoprene-tolerant; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins" /db_xref="GeneID:108070145" CDS 749..2881 /gene="Met" /codon_start=1 /product="basic helix-loop-helix ARNT-like protein 1" /protein_id="XP_017015988.2" /db_xref="GeneID:108070145" /translation="MAAAETGNTSSTGSGSGSGSGSGSGSSTDPANGREARNLAEKQR RDKLNASIQELATMVPHAAESSRRLDKTAVLRFATHGLRLQYVFGKSASRRRRRPSCL KGASSGLSSAAAAAGDLANPSLHLTDTLMQLLDSCFLTLTCSGQIVLVSSSVEQLLGH CQSDLYGQNLLQITHPEDQALLRQQLIPRDIETLFYQQQHQQQQQQHSTSTSASASGS DLDEEEMETEEQHLEEQEQDDNPYDRRPPSPRSIAHLAAIDERLRADRRCFTVRLARA STRAEATRHYERVKIDGCFRRSDSSLTGGAAANYPIVSQLIRRSRNNNMLAAAAAVAA EAATTSVPPQHDAIAQAALHGISGNDIVLVAMARVLREERPPEEAEGALGGLTIYRQP EPYQLEYHTRHLIDGSIIDCDQRIGLVAGYMKDEVRNLSPFCFMHLDDVRWVIVALRQ MYDCNSDYGESCYRLLSRNGRFIYLHTKGFLEIDRGSNKVHSFLCVNTLLDEQAGRQK VQEMKEKFSTIIKAEMPAQSSSPDLPASQAPQQLERIVLYLIENLQKSVDSGESAVGG QPMESLMDDGYSSPANTLTLEELAPSPTPTLALVPPAPSSVKSSISKSVSVVNVTAAR KFQQDREQAKERQHSSSQGVIRQLSSCLSEMETASCTLSPASSLSAGEAPDTPDPHSN TPPPPPQQPQPLHARPSVLHRTLTSTLR" misc_feature 848..1003 /gene="Met" /note="basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain family; Region: bHLH_PAS; cd11391" /db_xref="CDD:381397" misc_feature order(848..850,857..862,869..874,878..883,893..895, 956..961) /gene="Met" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:381397" misc_feature order(878..880,887..892,899..904,908..913,920..928, 956..964,971..976,983..985,992..997,1001..1003) /gene="Met" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:381397" misc_feature 1160..>1309 /gene="Met" /note="PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130" /db_xref="CDD:238075" misc_feature 1934..2263 /gene="Met" /note="PAS domain; Region: PAS_11; pfam14598" /db_xref="CDD:464214" polyA_site 5273 /gene="Met" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 agcacgacgg gccgttacat cgatgtatcg atagttttta gcctggccaa ccgagccaat 61 gtttattgtt ataaaataaa tgttaaaaat aaacaattaa tcacttaata taaacaaaaa 121 ccagtgcagg cattgtaaaa acgccccccg cccccgaaac tgacctcatc gcaggcaaac 181 aacaaataaa tagagcaaca acaacgccaa cggcagcagc agcagcaaca acaacaagca 241 ggagattcag attcgcaacg caatcaaaaa agaaaaaacg gaaaaaaagc tacaaggcga 301 aacgcataaa taaataggga aacaaataat agtaataata ataataagac taaagccaag 361 tggaaaagta cgaaagcgaa aagagaaaac atatgtacgt tgcgtgagag tgacgtgtga 421 gtgtgtgtgt gcgggcgagc gagagagaac gaccaaggag aggggcgaga ggagaggcga 481 gcaaaaacaa aaacaacagc acagcataag cgagaccttg aaaactttaa aagcagcagc 541 aaaaacaaca aaataaaata aagtaaaacc caaaaaaaaa gctgaaaaat ataatcgaac 601 taaatatttt tatataaaat ttagagagga gagtagcgga cacggatacc ctgttatgga 661 gagtgacgat tttcatttac cgcaaggcgc caattaaagg ggaaaatcca tagagaaaaa 721 ccgagaaacg agcgaggaaa atcggaaaat ggcagcagcc gaaacgggca acacaagctc 781 cacgggatcg ggatctggtt ccggatctgg atctggatcc ggatcctcta cagatcccgc 841 caacggcagg gaggcccgca atcttgccga gaaacagcgg cgggataagc tgaatgccag 901 catccaggag ctggccacca tggtgccgca tgcggcggag tcatcgcgcc gcctggacaa 961 gaccgccgtc ctccggttcg ccactcatgg cctgcgactc cagtatgtct ttggcaagtc 1021 ggcctcccga cgccgccgga gacccagctg cctcaagggt gccagttccg gtctctcctc 1081 cgccgccgcc gccgccggag atctggccaa tcccagcctg cacctcacgg acaccctgat 1141 gcagctgctg gacagctgct tcctcaccct cacctgcagc ggccaaatcg tcttggtctc 1201 ctccagcgtg gagcagctgc tgggccactg ccagtccgat ttgtatggcc agaatctgct 1261 gcagatcacc catcccgagg atcaggccct gctgcgccag cagctgatac ccagggacat 1321 cgagacgctc ttctaccagc agcagcacca gcagcagcag cagcagcact ccacctccac 1381 ttcggcctcc gcctcgggaa gtgacctgga tgaggaggaa atggagacgg aggagcagca 1441 tctggaggag caggagcagg acgacaaccc gtatgataga cgcccgccca gtccgcgcag 1501 cattgcccac ttggcggcca tcgacgagcg gctgcgcgcc gatcgccgtt gcttcaccgt 1561 ccgcctggcc agggcatcca cgcgggcgga ggccacgcgc cactacgagc gcgtgaagat 1621 cgatggctgc ttccggcgca gcgactcctc gctcaccggc ggagcggcgg ccaactatcc 1681 cattgtctcg cagctgatac gccgctcgag aaacaacaat atgctggccg cggcggcggc 1741 ggtggcagcg gaggcggcga caacgtcggt gccgccccag cacgatgcca tcgcccaggc 1801 ggcgctgcac gggatcagtg gcaatgacat tgtcctggtg gccatggccc gcgtgctgcg 1861 agaggagcgg ccgcccgagg aggcggaggg agcgctgggg ggcctaacca tctacaggca 1921 gccggagccc tatcagctgg agtatcacac gcggcaccta atcgacggca gcatcatcga 1981 ctgtgatcag agaatcggtc tggtggcggg ctacatgaag gatgaggtgc gcaacctcag 2041 ccccttctgc ttcatgcacc tggacgacgt gcgctgggtt atcgtggccc tgcggcagat 2101 gtacgactgc aacagcgact acggcgagag ctgctaccgc ctgctgtcgc ggaacgggcg 2161 cttcatctac ctgcacacca agggctttct ggaaatcgat cgcggcagca acaaggtgca 2221 ctcctttctg tgcgtcaaca cgctgctcga cgagcaggcc gggcggcaga aggtgcagga 2281 gatgaaggag aagttctcga ccatcatcaa ggccgagatg cccgcgcaga gcagcagtcc 2341 cgatttgccc gcctcccagg cgccgcagca gctggagagg attgtcctct atctaattga 2401 gaacctgcag aagagcgtgg actcggggga gtcggcggtt ggcgggcagc cgatggaaag 2461 cctaatggac gatggctaca gctcgccggc gaatacgttg accctcgagg agctggcccc 2521 gtcgcccacg cccaccttgg ctttggtgcc gccggctccg tcgtcggtga agagctccat 2581 ctccaagtcg gtgagtgtgg tgaatgtgac ggcggccagg aagtttcagc aggatcggga 2641 gcaggcgaag gagcggcagc acagctcctc gcagggagtg atccgccagc tgagcagctg 2701 cctcagcgag atggagaccg catcctgcac tctgtcgccg gccagcagcc tgagtgccgg 2761 cgaggcgccc gatacgcccg atccgcacag caatacgccg cctccgccgc cacagcagcc 2821 acagccgctc catgcgcgtc ccagtgtcct gcatcgtacc ctcaccagca cgctgcgatg 2881 acgggccgat ggctcctggt ttgccttcta attgggtgtg gaaatggacg ccactagtag 2941 cgcacatcaa gtccaagcca agtgaaagcc caaaatgtat cagatacttt caaggattag 3001 caaagaaaac cagtggtttt taaagactcc ttttagaaga ggaacatgtt tttaacaatt 3061 ggaaatttta tttcatttca aaacatttat aaaaacagaa ttttgtaatt ttcaagggac 3121 tttccattaa ttcaggtttc ttttaaacgt gatctaaatg ccttctttat cataaccaag 3181 caaaactatt aggtttccca aatatttatc tttttagtga ctccttttag aagaagaaca 3241 attgaaaatt ttatttcatt tcaaaacact tatgaaaaca gaattttgta attttcaagg 3301 gactctccat taattctggt ttcaactaaa ttctttcctt gtcataacca atcaaaacta 3361 ttaggtttcc catatatatt aacatatccc aacatggttt cattatagtt ttaaaaacac 3421 ccatgcttat gtgaacaaaa agcgaactga gggcgcattt attttgagat tatggcagtt 3481 ataataatcc gatcacgata atcgttacag aaaagaaagg gaaagataca ttttgggtgt 3541 agtggctgaa tttacaagtg atgtcgatcc gaagtatagg ctatatatat tgaacgccga 3601 tcggtgtgcg ctgctaaatg cgttccataa tcaataatct tcgttatgta attacgttta 3661 atttgtaaat atttcgtatg tgtgtgtgtg tttgagcacg agtgcgtctg tgtgcatggg 3721 tgtgtatgag aaatagatcc gtgctctcag ctttggtttt agttgaaatt taggccccat 3781 ttcccgattt cccagtggtc cgatctccgc ccagcccccc gcacaccagt gtaaaaagag 3841 tacaaaaaaa aaaacaaaaa caaaaaacaa acaattatat atttattttg ccctaagtct 3901 agaacacgct aaaaacgact cattaatagt taaacggatt ttgcaatcga tggaaattaa 3961 acgctcgatt tttgttttgc catctcactc accacaaaca gtcaaacttc tctaaatcga 4021 actttaaatc tacaacttct taatattttt ttttagttaa tcaaactata gtgaaaaaat 4081 tactaatatt ttaggcgtat ttttaggaaa accattttta acaaacttaa aaacgtatcc 4141 actataaatt ccaaaaattc caacaccaat tataaaagct ataatacaga atcctttggt 4201 aatttaaaag ctagggatgc caaatctcga aaaaaaactt attttaaaag tatttagcca 4261 attatatacc caataatttc gaaatttagt taacattttc aaagaattca ctgtaaacga 4321 ataataacca attgtgttca gaaaacgatt ataaaataat tttttagatt taacaaaata 4381 actttagaaa aattttttat aatcgagacg gcacttatac aattttaaat gatttaagca 4441 cattatttcg aaacaagtgg agtaaaatat ttcccgacat taaatattca aatgatattc 4501 gtttttctaa gaaaaaaaat ttttttttta ttagagaaga ggcgatccag ttcgtcctag 4561 cgaagtttga ctgtacttag ttcaatactc acagttgtta tcaaagcctt tgccatcgtc 4621 cttggcgttg cggtcttatc accggcgtat cggagggaat atatgatttt ttttcgggga 4681 agtggttcgt tctagtggta attatggggc ggtgggtggt ttaggggacg agtggagggg 4741 cggggcgggg cggacgttgg tgggcgaaag gaggggggct aacgtttcgt tattttttgt 4801 ttcatagcga aattctgcta gctataatct tatgcatata tattattaac ttttcgttta 4861 gctcaatttt ttgtttgtat ttttaattat tactcggttt gtctagtgtg taatttaatt 4921 aaaagtctaa tgctaatttc ccagcgaatc gttcagtgtt tgttcaaacg agttgtgctc 4981 tttaaacact tttggtttat cccttcattt aatttttgtt tgtctacctt gcgttgttat 5041 ttgcccaaaa aaaaaacaaa acaaattaat gttttttttt agtaatttag ctttaagtgt 5101 aatgtcaaat gtcaagcggt ataatctacg taagaataat aatgtgtaat gtctttttta 5161 gaacttgcta aactctagca attaaaaaat agcacgtaat taacaataat taattataat 5221 aatcagtgac agttcatgca gatgaaacgt taataaataa taaattataa aaa