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LOCUS XM_017160489 1838 bp mRNA linear INV 09-DEC-2024 ACCESSION XM_017160489 VERSION XM_017160489.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017160489.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1838 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1838 /gene="rho-4" /note="rhomboid-4; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108070140" CDS 258..1511 /gene="rho-4" /codon_start=1 /product="rhomboid-related protein 2" /protein_id="XP_017015978.1" /db_xref="GeneID:108070140" /translation="MPVKTVNRQQSQTPAQQLQMQQQRDVENGLYPTIPPERRSPPSR PQTLRQDTIDMEEIPLNQTSAQEPEDRRKMHEIFDKHDSDRDGLISTHELKELISDGY CRDIPAYIAEQILKRSDQDNDGHLDFEEFYAMSLRHKWMVRNMLTRYCRYVVPPPKPL EGDEPDGAYEKQMSICPPPLTMVLFSIIEIIMFLVDVIHFQDDPNYQDRIGESTSGPA ATLFIYNPYKRYEGWRFVSYMFVHVGIMHLMMNLIIQIFLGIALELVHHWWRVGLVYL AGVLAGSMGTSLTSPRIFLAGASGGVYALITAHIATIIMNYSEMEYAIVQLLAFLVFC FTDLGTSVYRHLTDQHDQIGYVAHLSGAVAGLLVGIGVLRNLEVRRWERILWWVAVIV YFALMTTGIIIHVFVPDYFPKQEYN" misc_feature <402..650 /gene="rho-4" /note="Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]; Region: FRQ1; COG5126" /db_xref="CDD:444056" misc_feature 933..1379 /gene="rho-4" /note="Rhomboid family; Region: Rhomboid; pfam01694" /db_xref="CDD:426384" polyA_site 1838 /gene="rho-4" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gagagtcgtt ttttttttgt gtttttggtt gttcgcttgc tccgcggttt ccaggtgctc 61 cgctttttat ggcccgctct taatcttatc gcaaatcaaa ccgcgggcaa tgagaattgt 121 aattgcattt tttggctaac ggtaacggtt tcgcacagtg ggcttaaacg gcgattgaca 181 ttgaatcgaa tccgtttaac caaaatccga atttcgagtt cttggggtga ataaacaaca 241 aaaaaaaaag aagaaaaatg cccgtgaaga cggtgaatcg tcagcagagc caaacgcccg 301 cccaacaact gcaaatgcag cagcagcggg acgtggaaaa tggcctttat cccacgattc 361 cgcccgagcg ccgctcgccc ccctcccgcc cgcagacgct gcgacaggac accatcgata 421 tggaggaaat accgctcaat cagaccagcg cccaggagcc cgaggatcgt cgcaaaatgc 481 acgagatctt cgacaagcac gactccgaca gggatggact gatcagcacg cacgagctga 541 aggagctgat ctcggatggc tactgccggg acattcccgc ctacatcgcc gagcagatcc 601 tgaagcgcag cgatcaggac aacgacgggc acctggactt cgaggagttc tacgcgatgt 661 cgctgcgcca caagtggatg gtgcgcaaca tgctgacccg ctactgccgc tacgtggtgc 721 cgcctccgaa gcccttggag ggcgacgaac cggacggcgc ctacgagaag cagatgtcca 781 tctgcccgcc gccgctcacc atggtcctct tctcgatcat cgagatcatc atgttcctgg 841 tggacgtcat tcactttcag gacgatccca actaccagga tcgcattggc gagagcacca 901 gcggaccggc ggccacgctg ttcatctaca atccctacaa gcgctacgag ggatggcgct 961 tcgtgagcta catgttcgtc cacgtgggca tcatgcatct gatgatgaat ctgatcatcc 1021 agatcttcct gggcatcgcc ctggagctgg tgcatcactg gtggcgcgtg ggtctggtct 1081 acttggctgg tgtcttggcc ggatccatgg gcacctcgct caccagtccc cgcatctttc 1141 tggcgggtgc ttcgggtggt gtctatgcac taatcacggc gcacattgct acgattatta 1201 tgaactactc ggagatggag tacgccatcg ttcagctgct ggccttcctg gttttctgct 1261 tcaccgattt gggcacctcg gtctaccgcc acctgaccga ccagcacgac cagattggct 1321 atgtggcgca cttgtccggc gccgtcgccg gattgctggt ggggatcggg gtgctgcgca 1381 acctggaggt gcggcgctgg gagcgcatcc tctggtgggt ggccgtcatc gtttatttcg 1441 ctttgatgac caccgggatc atcatccatg tgtttgtgcc cgactacttc ccgaaacagg 1501 agtacaacta gccctagaac ttagccgtag ccctagccct agcctagacc atgtccaaag 1561 tgcacttcga tgttgagcaa aggctgcagt acgcacagtg ctatctatag gataccaatg 1621 ccgaccatgt gcctatgcgc gagatggaaa cgtaatttat tatcttactc cttgccatgg 1681 cagcttcatc ccatccgtac gtatggtgta cgtattttta tatctaaata tttatacaag 1741 tattctcgat ctacatgacg caacgaaatg tccggggtgg tttcccattt caaaacccac 1801 agagaacaaa actcagctgc atttcgtgat tttttttt