Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_017160488 4540 bp mRNA linear INV 09-DEC-2024 (LOC108070139), transcript variant X1, mRNA. ACCESSION XM_017160488 VERSION XM_017160488.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017160488.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4540 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4540 /gene="LOC108070139" /note="uncharacterized LOC108070139; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108070139" CDS 146..3901 /gene="LOC108070139" /codon_start=1 /product="uncharacterized protein isoform X1" /protein_id="XP_017015977.2" /db_xref="GeneID:108070139" /translation="MSSPDDIPGTSKPRATKRSPRTSSSDSKSMPSPPQTTSNGAHGS PSGRSPSAGRSPAGNRSPAGGRSPVGGQSPGVGPTNMRDRLLVSNAIAMDVSASESTS SSSSPQMNGHNHDDSNESDQLNGGSTNGTSRKSKKKKKKSHSRRERRLSGDSALMGWT GGFPKLTAMASIDSSSDLEPQSPGELRALGRRGLSVFPRVEPQAETAAGPSESSEVAV TETETEITEEQQQQEQQQQQQSLATPPSPMMTSPVESSLSSNSDLNMTTSTPPGRGPE PEQQEPEQPITLATATSTNLTTTTPTTPTTSNSYNNVNATGTASPRTTATATATNMQQ TELDNQEKEMEKEQPAKAEEKQDDQDKQQQQPAENPEQEEQIESLVVTEDENSSSVPP VLKSSSPPSTPRSRKRAFSPAKKENTKKTTPDEAMDVSLDESAEKTEDIPLPVSSRFA KRFKSFCSQTLQSVELMRRTSRFSSQEPPAKLEEELAPVVGSKESPDPKPEAAAAEAP PTPSALKLKATDEFYRLPFAYGWKRELVLPSTGNPKRRTGDVFFIAPNGRKLRSREDI VPMLKGELTIEHFCFQRQAQEAGPEFELVRRATPSSVQRRKSQQAVAQPAPLPVTGKR VSKPKVPKGASPPSEGWTATMAVKGNSRVLASSNGSSSSTGATIVTTSTRKRSFMSRQ SSRLTSEKIVACIHCQAPLQGSPKTNICQNCSKIKRKKERESEMTAEPQPENEDQDEE QNDDGDETESVGSLLEIGEEIEVPGQQPPAELFNNLGHRRSPKDQEVVVIGGRKAIAI KADPPRRQVKVVPRQPDLTGYEKIYSKRSQVKNSDNELVESLGNAHNGCQVLMAIMKT MNLKDRANMSRVCKTWAMVSREMSVWRSVSLRDTYVGNWLFCMRELARHRTRELDMMG VIMAKPQLRFAGDLRVLKALRVLRTDAVDGEFLQLVFRHLPQLLELRATCTSATLNLC HLEQSAELRVLRIHMTEPKSTLVSLDSLAKLTHLTELSLRGVSDLGKLNLLFLKDLAG LEVLSLGSCQDLNSSQFGTQVLPALKLLRSFRLENDHKGMAMFPVDEIMLGLSKAGGV KRLELVNVDVDGGFSALLADCPSVTDLLLTPKCMHNTANMTNAVMQAISDNAEQLLVF RLGLVTQLLSATGALYKGKGKDVIPVQRPVPGIPENDHLNHCSGDDNCQETEHSQCVA FLPVERLKAILHHMMPQAWLTVAKVAMCETTSIKFLPRPEESSEENF" misc_feature 1715..1897 /gene="LOC108070139" /note="MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to...; Region: MBD; cl00110" /db_xref="CDD:469618" misc_feature order(1745..1747,1751..1753,1763..1765,1784..1786, 1790..1792,1817..1819,1826..1828,1838..1840) /gene="LOC108070139" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238069" misc_feature 2690..2794 /gene="LOC108070139" /note="F-box domain; Region: F-box; pfam00646" /db_xref="CDD:425796" misc_feature <2996..>3340 /gene="LOC108070139" /note="Leucine-rich repeat (LRR) protein [Transcription]; Region: LRR; COG4886" /db_xref="CDD:443914" polyA_site 4540 /gene="LOC108070139" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 caacgctgcc gacaaccagg tggcaactct ttccggccga tttaccgaat gtcatttgag 61 agagtacttc tcactttttc gagggaaatt ggattgataa gtgaattttt ctggtgaaaa 121 gtaatttcgt gctaaaaaga gcaacatgag ctcgcccgac gacattcccg gaacatcaaa 181 gccgcgcgcc acgaagcgct ctccacggac ctccagcagc gactccaagt caatgccctc 241 gccgccccag acgaccagca atggggcaca tggctcgcca tccggcagat ctcccagcgc 301 cggacgcagt cccgccggca accgaagccc tgccggcggt cgtagtcccg tgggtggcca 361 gagtcccggc gtgggtccaa ccaacatgcg cgatcgcctg ctggtgtcca atgccattgc 421 catggatgtg tcggccagcg agtcgacctc tagctcttca tcgccgcaga tgaatggcca 481 taatcacgat gactccaacg agtccgatca gcttaacgga ggttccacaa atggaacctc 541 tcgcaagtcc aagaagaaaa agaagaagag ccacagtcgt cgtgagcgcc gcctatccgg 601 agattcggct ctcatgggct ggacaggggg attccccaag ctgacggcca tggccagcat 661 tgatagtagc tcggatttgg agccgcagtc gccgggcgag ctgcgggcgc tgggcagaag 721 aggtctgagt gtgtttccga gggtcgaacc gcaggcggag acagcagcag ggccatcaga 781 gtcgtctgaa gtggctgtaa ctgaaactga aacagaaatt actgaggagc agcagcaaca 841 agagcagcag cagcagcagc agtcgctagc aacgcctcca tcgccgatga tgacgtcgcc 901 ggtcgagtcc tcgctgtcct ccaactctga cttgaatatg acgacatcta cgccaccggg 961 acgtggacca gaaccagaac aacaagaacc agaacaacct atcactttag caactgcaac 1021 tagtacaaat ctaactacaa ccacaccaac aacaccgaca actagcaaca gctacaacaa 1081 tgtaaacgca actggtactg caagtccaag aacaacagca acagcaacag caaccaacat 1141 gcaacaaaca gaattagaca atcaggagaa ggaaatggag aaggagcagc cagcgaaggc 1201 agaggaaaag caggatgatc aggataagca gcagcagcag ccggcagaga atccggagca 1261 ggaggagcaa attgaatcgt tggtggtgac cgaggatgag aacagctcaa gtgttccccc 1321 ggtattaaag tcatcgtcgc cgccgtcgac tcctcgttcc cgcaaacgcg cattcagtcc 1381 cgccaagaag gagaatacca agaagacaac tcccgacgaa gctatggatg tttcgctaga 1441 cgagagtgcc gaaaaaactg aggacatacc cctgcccgtg tccagtcgct ttgccaagcg 1501 tttcaagtcc ttctgtagcc agaccttgca gtcggttgag ctgatgcgtc gcacttcgcg 1561 cttcagcagc caggagcctc cagccaagct ggaggaggaa ctggcccccg tcgtgggcag 1621 taaggagtcg cctgatccta aaccggaggc cgccgctgcg gaagcacctc ccacaccctc 1681 ggccctgaaa ctaaaggcca ccgacgagtt ctatcgcctg cccttcgcct acggctggaa 1741 gcgtgagctc gtcctgccca gcactggtaa tcccaagcgt cgcaccggcg atgttttctt 1801 cattgcgccc aacggacgca agttgcgttc gcgcgaggat attgtgccca tgctgaaggg 1861 cgagctgacc atcgagcact tttgcttcca gcggcaggcg caggaggcgg ggccggagtt 1921 cgagttggtg cgtcgggcca cgccctccag cgtgcagcgt aggaagtccc agcaggcggt 1981 ggctcagccg gctcccttgc cggtcaccgg gaagcgtgtg tccaagccca aggtgcccaa 2041 gggcgccagt ccaccgagcg agggatggac ggccaccatg gcggtgaagg ggaattcccg 2101 agtgctggcc tccagcaacg ggagcagcag ctcgaccgga gccacaattg tgaccacgtc 2161 cactcgcaag cgaagcttca tgtccagaca gtcgtcgcgg ctgaccagcg agaagattgt 2221 ggcctgtatt cattgccagg ctcctttgca gggctctccc aagaccaaca tttgtcagaa 2281 ctgctcgaag atcaagcgca agaaagagag ggaatccgag atgacggcag agcctcagcc 2341 ggaaaatgag gatcaggatg aggagcagaa tgacgatggc gatgagaccg agagcgttgg 2401 cagcctgttg gagattggcg aggagattga ggtgcccggc caacagccgc cggccgagct 2461 gttcaacaat ttgggacacc ggcgctcgcc caaggatcag gaggtggttg tgattggcgg 2521 acgcaaggct atagccatta aggccgatcc gccgcgtcgc caagtgaaag tggttccacg 2581 acagcctgat ttaactggct atgagaaaat ctacagcaag cgcagccagg tcaagaattc 2641 ggataacgaa ctggtggaga gcctgggcaa tgcccacaac ggatgccagg tgctgatggc 2701 catcatgaag acgatgaacc tgaaggaccg cgccaacatg tcgcgggtgt gcaaaacctg 2761 ggccatggtc agccgcgaga tgagcgtgtg gcgctcggtg agcctgcgcg acacttatgt 2821 aggcaactgg ctattctgta tgcgcgaact ggcccgccac cgcactcgcg agctggacat 2881 gatgggcgtg atcatggcca agccgcagct tcgtttcgcc ggcgatttgc gcgtcctcaa 2941 ggcgctgcgc gttctacgca ccgatgcggt ggatggagag ttcctgcagc tggtctttcg 3001 ccatctgccg cagctgctgg agctgagggc cacctgcacg agtgctacac tgaatctgtg 3061 ccacctggag cagtccgcag aactgcgcgt gcttcgcatc cacatgaccg agccgaaatc 3121 gaccttggta tcgctggact cactggccaa acttacgcat ctgactgagt tgagtctgcg 3181 tggagtgtcc gatttgggca agctgaactt gctgttcttg aaggatctcg ccggcctgga 3241 ggtgctatcg ttgggctcgt gccaggacct aaactcttcg cagtttggca cgcaagtgct 3301 gcccgctctg aagctgctgc gctccttccg cctggagaac gatcacaagg gcatggccat 3361 gttcccggtg gacgagatta tgcttggtct atcgaaggcc gggggagtca aacgcctgga 3421 gctggtgaat gtggatgtgg acggcggatt cagcgccttg ctggccgact gccccagtgt 3481 tacggatctg ctgctgaccc ccaagtgtat gcataacacg gccaatatga ccaatgccgt 3541 tatgcaggcg atcagcgaca atgccgagca gttgctggtg ttccgtctcg gtttggttac 3601 ccagctgctc agtgccaccg gggcgctgta caagggaaag ggcaaggacg tgatcccagt 3661 gcagcgtcca gtgccgggaa ttccggagaa cgaccaccta aatcactgct ccggcgacga 3721 taattgccag gagacggagc acagccagtg cgtggccttt ctgcccgtgg agcgcttgaa 3781 ggcgatcctg caccacatga tgccgcaggc ctggctcacg gtggccaagg tggcgatgtg 3841 cgagacgacc agcatcaagt tcctgccccg tccggaggag agcagcgagg agaacttcta 3901 gcctaggtgc cataagatat agatataagt aacccccctc ctcctcccag taccagagat 3961 gccaagactg acactttgag aaccatcaca aaaaaaccac aactaaattc cagcggaaac 4021 gaagaacgaa caaggaaatg ttattgcgtc atcttaaaaa gagcattccc aggaatcgca 4081 cattattttt gtttttgaaa tcatctttcg tttaacggcg tttaaaacgt cccattgtct 4141 caccttcgca ttggaagtag aatcaacagc aacgctgtgt ttttgttcga ccttcgggta 4201 cttaccattt attacatctt aaacatcttg taatcaaacc aatttgtaat aggagttgaa 4261 cctaataaaa cggcagatct cctagtgtgg gaaaacttac ttgactaaat tgatagagaa 4321 ccaaatgatt gggaaatgtt gaatttcaaa ttcagcggta ttctttagtt cataagttag 4381 aaatagctca agtctatatg tacataaagg tcctgtttgc cttcaatacg aagctcagat 4441 cgaactattg attaagttgt agtcgtaaaa tgtcgcacat tatgtacatt tcggcactca 4501 tttaaaaata aaatccataa gggaaacacc cttcactttc