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LOCUS XM_017160486 4837 bp mRNA linear INV 09-DEC-2024 protein bifocal (bif), transcript variant X1, mRNA. ACCESSION XM_017160486 VERSION XM_017160486.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017160486.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4837 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4837 /gene="bif" /note="protein phosphatase 1-binding protein bifocal; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108070138" CDS 322..4086 /gene="bif" /codon_start=1 /product="serine-rich adhesin for platelets isoform X1" /protein_id="XP_017015975.2" /db_xref="GeneID:108070138" /translation="MESQKRPSLHLLTDVPAGSAAGGAGPAGSAAEMSPTSGFLPDMP QWKKDLIQRRKTNVARTQAASIASPTDGSCGALAEATAAPGAIADSTEPATIISTSQK RNMIGSEEKCEKSSISNTNSNSTGGHHSVVAVSLSPEAATTNVTVTPIPKQRSSLLLN TRSQEKEGEREILAESAERERETESEREQPAAVVVVVGSGRCGEVETGTTGAAATSSP SSSSANQNPNPNHLKTKCKPGQSVAEGKPSAKETTISISSESTTKSCSKTKSISDKLQ SNKFIIQQQQQQQQQQQQLSPTKVTVKPTMVAMQEMKKTTKQNGQHRHLTAKIGTASG PGGVDVDSQSPNPIPDSLDTGEDLSYGPGIVSKLRCRYLSLALRESRQQSSKQRLQRS TSLNTLLDRDDDEVDVEVEPEVVASSQVRAKSTPPPILGAKPTGKPNRQDNQQQQQQR PVSLGANGGSAAVNPPLTSEDAQPGQVIANGSANRSRHFKRGNEVMKRARSVEALLCE KSPWNSQRISTAGTPSPTAIKANVAPSPVVTSPTCVTIEDKIHNARERLHSGTDTAPP KRLTSIIDDTERPPPDLVKQTLKMFEASANRRPRAAHRSNGVGGVASKVASYKSIIKD QATPPPSSGFASSTPLRNPHHVHPDIIPRQVDSPVSALSLMMRRMELQDPETPERDTT PQSEAPSETERNDRDEGDVDGEGDGEGDDDSPNNNDDHDDDSSDNNEQCDKMGAAAGG GGDKPKPPAESAAGGAQRSFAASTENAHVASGSSSTSSTTTTVRKLNNNSSSSISDSS GPAVTKQIGVIRPLFNSQGAGSTPLTSREIEKNRINEMKKSTATEAGAGSGSGSATGS SPTASLDTVINTKEAASSETDASASPLWTLRKLRSSQSQGAGGGGGASGGSGPSSSHH STENTSMVFNFSKSTKEVPDYIESDVVIYRRKRELPKPNEPGFVLLGDLSVETSTDTD YDDYSMCPPSPCDVEFENANIVIDGKSSIRQKAKDSSFRVQFNDTLTSTFEYPSEASM TIEDPPYADPFGHVSKHHQMLLAEQMHRLQHQQQLEQLELEQMHQLGLQEQHHHVTVD EIIELPTSTAGHGHGHGYRAGAAGGGPMLGNLPLGSKALGFYTPMKGVSPMDNLFQLG VTRYALPESSSSGSSNGSHSPSSNGSSPAGATAAAGGQLMFNGNGSIVGFGEGLIKGQ QQEDSTAEAAATGAGGSTSAGDEDDYDHLTATPGAGVVYSEGTQKTDLLY" polyA_site 4837 /gene="bif" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aatcgatagg cagtatttgt gtattggaaa cgcggcttaa cttgatgcag atttttccgc 61 tgattcggct gcaaatgatg cacttttgag gcgcagcgag tgcacccacg cccccgagtt 121 cgagtgcagt tgcagtcggg aaagtttgga aagtgcgcgg agcgtggaga gcgacgaatt 181 cggccagcgc gtcgagctga aaggagcgga aaagaaaagt gacgaaaagc gggggaaaac 241 ggcggatgag cgaaaatcgg aaaattgaaa acgaaaccaa ccaccgactt gtttaagccc 301 agcatctcaa aaacggggat aatggagtca cagaagcggc cgtcgttgca tttactcacg 361 gatgtgccag caggatcggc agctggagga gctggacctg caggatctgc agctgagatg 421 tcgcccactt ccggcttcct gccagacatg ccgcagtgga agaaggacct catccagcgg 481 cggaaaacga acgtggcccg cacccaggcg gcgtccatcg cctcgcccac cgatggcagt 541 tgtggggctt tggcggaagc caccgccgct ccaggtgcaa ttgcagattc cacggaaccg 601 gcgacaatca ttagcactag tcaaaagaga aatatgatcg gttcagagga aaagtgtgag 661 aaatcttcca tttccaatac caattccaat tccactggag gtcatcactc tgttgttgcc 721 gtctcccttt cgcccgaagc ggcaacaaca aatgtaacag taacaccaat accaaagcag 781 cgatcgagtt tactactcaa cacgagaagt caggagaagg agggagagcg cgagattcta 841 gccgagagtg cggagagaga gagagagaca gagagcgaac gcgaacagcc ggctgccgtg 901 gtggtggtgg tgggtagcgg ccggtgtggt gaagttgaaa ctggcacaac tggagcagca 961 gcaacatcgt cgccgtcgtc gtcgtcagca aatcaaaatc caaacccaaa tcacttgaaa 1021 acgaaatgca aaccgggaca gagcgttgct gagggcaagc cttcagcgaa agagaccacc 1081 atttccattt ccagcgaaag caccaccaag agctgcagca agacgaagag tatttccgat 1141 aaattgcaga gcaacaagtt tataattcag caacagcagc agcagcagca gcaacaacag 1201 caactgtcgc ccacaaaggt aacggtaaaa ccgacaatgg tcgccatgca agagatgaag 1261 aagacaacca aacaaaatgg ccagcaccgc cacctaacgg ccaaaatagg cactgccagc 1321 gggccaggcg gcgtggatgt ggattcccaa tcgccgaatc ccattccaga ttccctggac 1381 accggcgagg atctgagcta cgggcccggc attgtgtcca agctgcgctg ccgctacctc 1441 agcctggcgc tccgcgagtc tcgccagcag agtagcaagc aacgcctcca gcgctccacc 1501 agcctgaata ctctcctgga tcgcgacgac gacgaggtgg atgtggaggt ggagcccgag 1561 gtggtggcca gtagtcaggt gcgtgccaaa tccacaccgc caccgattct gggtgccaaa 1621 ccgaccggca aacccaacag acaggacaac cagcagcagc agcagcagcg tccggtgagc 1681 ctgggcgcca atggaggatc ggcagctgtt aacccgcccc tcacctcgga ggatgcccag 1741 ccaggtcagg tgatagccaa cggatcagcc aatcgatcgc gtcactttaa gcgcggcaac 1801 gaagtgatga agcgggcccg ctccgtggag gccctcctct gcgagaagtc gccgtggaac 1861 agtcagcgga tcagcaccgc gggaacacct tcaccaacgg ccatcaaggc caacgttgcc 1921 ccctcacctg ttgtcacctc gcccacctgc gtcaccatcg aggataagat ccacaatgcc 1981 cgcgagcggc tgcacagcgg cacggatacg gcgccgccca agcggctgac ctcgattatc 2041 gacgacaccg aacggccgcc accggatctg gtcaagcaga cgctcaagat gttcgaggcg 2101 agtgccaatc ggcgaccgcg ggccgcccat cgttccaacg gcgtgggcgg agtggccagc 2161 aaggtggcga gctacaaatc aatcatcaag gatcaggcca cgccgccgcc gtcgtcgggc 2221 tttgcctcct cgacgccgct caggaatccg catcatgtcc atcccgatat aataccccgc 2281 caggtcgact cgcccgtttc ggcgttgagt ctgatgatgc gtcgcatgga gctgcaggat 2341 ccggagacgc ccgaaaggga taccacaccg cagagcgagg cgccaagcga gactgagcga 2401 aacgatcgcg atgaaggcga tgtcgatggc gagggcgatg gcgaaggcga tgacgacagc 2461 cccaacaaca acgacgatca cgacgacgac agcagcgaca acaatgagca atgcgataaa 2521 atgggcgcgg cggcaggcgg cggcggcgat aagcctaagc ccccagcgga atcggcagcg 2581 ggaggcgccc agcgatcatt cgctgcctcg acggagaacg cgcatgtagc cagcgggagt 2641 agcagtacca gcagtacgac aaccacagtg cggaagctca acaacaacag cagcagcagc 2701 atcagcgatt ccagcggacc agcggtgacc aaacagattg gtgtgatccg gccgctgttc 2761 aatagccagg gagctgggag tacgccactg acgagtcgcg agatcgagaa gaatcgcatc 2821 aatgagatga agaagtcgac ggccacagaa gccggtgcgg gatcgggatc gggatccgca 2881 acgggatcct cgcccaccgc tagtctcgac accgtgataa acaccaagga ggcggccagc 2941 agcgaaacgg atgccagcgc ctcgccactg tggacactgc gcaagctgag gagcagccag 3001 agtcagggag ccggcggcgg aggaggagcc agcgggggat cgggacccag ttccagccat 3061 cattccacgg agaacacctc gatggtgttc aacttctcca agagcaccaa ggaagtgccc 3121 gactacatcg aaagcgacgt tgtgatttac aggcgcaagc gggagctgcc caagccaaat 3181 gagcctggct tcgtgctgct gggcgatctc tccgtggaaa cgtcaacgga cacggactat 3241 gacgactact ccatgtgccc gccatcgccg tgcgatgtgg agttcgagaa tgccaacatt 3301 gtgatcgacg gcaagtccag catacgccag aaagccaaag attcttcgtt ccgcgtgcag 3361 ttcaacgaca cgctgacgtc gacgtttgaa tacccctccg aggcatcgat gaccatcgag 3421 gatccgccgt acgccgatcc gttcgggcat gtgagcaagc accaccagat gctgctggcg 3481 gagcagatgc acaggctgca gcaccagcag cagctggagc agctggagct ggagcagatg 3541 caccagctgg ggctgcagga gcagcaccac catgtgaccg tcgacgagat catcgagctg 3601 cccacgtcga cggcgggaca tggacatgga catggataca gggcgggggc ggcggggggc 3661 ggaccgatgc tggggaattt accgttgggc tccaaggctc tgggcttcta cacgcccatg 3721 aagggcgtct cgccgatgga caacctcttc cagctgggcg tcacccggta cgctttgccc 3781 gagagcagca gcagtgggag cagcaacggc agccacagtc cgagcagcaa cgggagcagt 3841 ccggccggag ctaccgccgc cgccggcggc cagctgatgt tcaacgggaa cggcagcatc 3901 gtgggcttcg gcgagggact gatcaagggg cagcagcagg aagactcaac ggcggaagca 3961 gcggcgacgg gagcaggtgg ctccacctcg gccggggacg aggatgacta tgaccatctg 4021 acggcgacgc cgggcgcggg agttgtgtac agcgagggta cacagaagac ggatctgctg 4081 tattaaaaac cggagcaggg agctcttttc taccggtttc caagccccaa aacccaaaac 4141 ccgccccaaa acccaaaacc attcccctaa attgaaaagc gtgcgcttag gtgaaatatc 4201 aatttcggtt agacacaaaa aaaaaacgta gaaaacaacg taaaccaagt atggcaagaa 4261 atccataaag atacgtatat aaatagatat tatttgtaag tttgtaggcc tagagatccg 4321 atgtgtatgt gtacaacagc aagcgtgtgt gtctgtcttc tttatatata tatatatata 4381 aatatatgtg tttttttttc gataaattaa taattatatt attgtaatgt atccacggca 4441 ctgaatgaac aactttgctg cttctattgt atttgtattg tgtattccat ttacggcatt 4501 ttgatagtaa atatacaaca acaacaaatc aacgtatttc cgactgctgc atcccgaagg 4561 taacttaaat cttaatctac gaagcgagcg gttaagtccg ccggagtatt aacttaatgg 4621 atcttgaaat ggtcccctct tgtgaaccat tctcccctta cgcgaacctt cttccgcccc 4681 gaaaaaaaag aaacaaaaat tatacaaatt ttaagtcctc cccaaccgga agaatgcaaa 4741 agaaaatgta acatttgcct cataattatt atatacatta gcgcttatta aatatttttt 4801 acaattgtat tccgtaaata aatataatat acatcaa