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LOCUS XM_017160483 8298 bp mRNA linear INV 09-DEC-2024 variant X1, mRNA. ACCESSION XM_017160483 VERSION XM_017160483.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017160483.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8298 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..8298 /gene="rudhira" /note="rudhira; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108070137" CDS 1326..7370 /gene="rudhira" /codon_start=1 /product="uncharacterized protein rudhira isoform X1" /protein_id="XP_017015972.2" /db_xref="GeneID:108070137" /translation="MSADSPRRHPSGVVGSGLGSTSGSISGSGSAGGSSKSGTAVPAI VPPQTVSDRSILDSAIGFINDVTLANQPVQDPKDTITWARFETCADVSDPRFGDDWEL EGNAAPPLLLILGYGLGVQVWAIPANGEAVEVLSWRHGVVTALRVLPTPATAAALDEN GRADEPVDAFAEKRPLVAFVDGGSAAASGLLSGNPGLGLGGGGGGGGIPTVGGSVGGA GVSAAAQFSAVNFMSLKTGVQVKTIKFKNAVLDIQANRSAVVITFHERIAVFDARTLE DRLTITTCYPSPGINPNPIALGPRWLAYAEHKLLHSKRSGGGCDGEGVPSYTATVLNA AKSLGKGLRELGEQVAAGLTGTTAGSAGSSKSSSFDSASGGPDAKQSGVVTIIDVKHP VKDYSPTSGTPLSSTGGSQGGGDPIVAHFVAHSEALVALEFDSSGMLLLTADRRGHDF HVFRIQPHPVGPSLAAVHHLYVLHRGDTSAKVQHIAFSLDSRWAAVSTLRGTTHVFPI TPYGGAMGVRTHTSLHVVNKLSRFHRSAGLGADGRSSSPISHSESTTFVQSLQPYHNP TLPPYPRPSVVQPLAQLRQPFTLGSPPGSAGLGGGGGVGGGGGMSSGVSSVGHGGVGV GSSSQRQRQRLSSLSDDSGKPLSVCSIFAKSRSWLLEPPMATREQPHRVQRKAVDSLF VMAGHGALIQYDLDTKLASHVAKEKICDDTPIELEVEARAQWNLGRRKDGSQEIAPPL TLDNWLIKDRHGSLLQDSTHHFDEPDERAESWLAQVEIITHAGPHRRLWMGPQFVFKN YNTPSGSNLNHVDAEAVEIGVTKTTTTTLPSTAAASSVLGGGKDRSSPLNMPLNAATS VGGSGIGSSAVTGRSGAGVPVLIESGSYSSIEQSPKLMDRFRHGHLDSDYGHGDTRLK EDLADAMRESPSTAAARRETSAASADPAAPPPCGDQHHLATGSSPSPADLLAAGGGGS SSSNCDNACYYDALAEHESLNDLDEVAEDHHPDTDTHLHSMDSINALASVLPNICSYS RVEKMVNPLGTVTDLNAGISGELQTDMLDEVVGQLAAEETVIHENCDEALFRPVVAIF CSDPVERQKLLQKKDPQTDEAMAAELELQQASCQPPVVLVNKLIVPVIAKEVDEVLVQ KEKQKSQKSQKAQQQQQQKNLRSLAAAEDAAQAQRFAELSHLNKPKSNTNNNNKTASQ KSGSGTSEDEATNATIAKSAKKAKSNKQKTRKPEQEKIVKEKEEVMKEVEIQEEEQLS EAESDHADSLLANKSSIAAVMVSSASAQGLSLHVEMSAPDAQDEDEEEEEEKEERDTE EEPPKAAKKKQQPGGAVATMTIDKEKEKTKEKELKLKEKEKEKEKEKEREAKLKEKEK EERLKLKEREEREKKEREREENLKEEKIKEKQREEKLKEEKEREERIKEKERQEKIKE KEREERIKEKEREEKLKEKQREEKLKEEKIKEKEREEKLKEKERAEKIKEKEREEKLK EKEREEKIKKEREERQKEKEREEKLKEKERQEKLREKEREEKLKKEMEEKQKEREREE KLKEKEKAEKLKELEREAKLKEKEREAKLKEKAEKEKVKEKEKTLESPLPAAVTSPWR RVADETPTKLPAVQDYPSLGKKPAKASPEKKRDEKLLPGLTTPPKEEVKDTFEDFLSG LKPLEALPPLPALEPLEVKDDSKKETLSLINFESPLQEKSAIPRNISPPPRGFTEQNL ILALCGSLHYENEQERVREADLEVVATPEPAYITLDTLSLQKSTSTSNNSSGSEEIVI MEEPVKKLSKKHKRLKQLQLQQQQREREREPDDEELRPLISISMCDSQLEQPARSAAD EDEAGDVEETEPEPEPQPESLPEDLLHFGSSGVATNATSEDSEGPVPATTSDDNVVYG NAAAAPPHKLKTKKLEHKINLIAAIEAATSSSTSSAEESSVETTVHPADSTGLGLGLQ SHSPGGGTSSGNLTTGAAAATTAALNAAGGGGGGVTSVGVASPPSATKKKTKRRKR" misc_feature 3225..3776 /gene="rudhira" /note="Breast carcinoma amplified sequence 3; Region: BCAS3; pfam12490" /db_xref="CDD:463605" polyA_site 8298 /gene="rudhira" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tcccaccacc tctagccaga agagagacaa aaaacagaga cagaaacagc gcagcaacca 61 aaataataac aattaataat actaagtgtc cgctaacgat attacccgaa taaaggcagg 121 cgctcgctag cagtttttga ccagctagca ctagtttttt ttccttttcg ttttggcagc 181 agtctctctt ggttattttc tgtttttttt ttctgttgcg acgcataaat cgtctttaat 241 cgatacacat atatatatat atataagtta acgggagagt acaacaacaa caaggccagc 301 gattgcagat ttaatgtcgc agttactttt tgtgcagcaa caacaacaaa cacagtggca 361 gtcggcagca caacagcaac aataacaaaa tcataatcga aaaacgacga aaaagaagta 421 gaaaaaaata aaacgtacga cgcagcgcag tcgttgtgtc tgtattggtg cgtgtgcgtg 481 tgtgtgtgtg agtgcgagtg agccagcaat agggctctgc gtcgacggcg gcagcggcag 541 aagaagaaga agcagcaaaa agttcagttt tttcaaacaa aacccgagct ccgcagttga 601 gaacttgctg cgcgtttcga ggagagctat taattaatta gtagaagccc aaaaattaag 661 cacccgcact tggagggcgt ggcaaaacaa caaaaaacca gaaaataaag gggggcggat 721 agaaagagag gggaaaagca agacgcagtt tggagacttg acttttttgt tgctgctgct 781 gccgcctgca acaaacgaag ataataaaaa agaggagctc gaaaacaaca acaacaagaa 841 gaacacacca aaaaggaaat caacaacaaa agcttgagca agagagagcg agagagacat 901 agagagagag cgagcagcta aaaacatatg atttttgttt gtgttgttgt ttttgcgcgc 961 gctctgcgga acgtgtgaga aaagtggaac gagcgaatgt gtttcagctg ctgctgattc 1021 agattcaacc aacgaacagc aacaacaacg caagtgttga caacaagaga gagccaacga 1081 gagacagaga gcgagagagt gagcgggagc gaaagagcag gggaaagcaa gaaccgatca 1141 gacgcagtgt ctccagtagc atatacccac tgcccactgc cagccccacc ccgcccctct 1201 gtccactgac cagtccagtg tggaggcact gcatcattgg cagcagctgt ggtagcagct 1261 agaagaggag gagcgattcc aggagcggcc atctcccccc ctcccgcagc cgtcgtcgtc 1321 gcatcatgtc cgcggattcg ccacgccgcc atccctcagg cgtggtcggt tccggtttgg 1381 gctccacatc cggatccatt tccggttccg gctccgctgg aggcagcagc aaatccggca 1441 ccgccgtacc cgccattgtg ccaccgcaaa cagtctcgga tcgctcgatt ctcgactcgg 1501 ccattggctt catcaacgat gtgactttgg ccaaccagcc ggtgcaggat cccaaggaca 1561 ccatcacctg ggcccgcttc gaaacgtgtg cggatgtcag cgatccgcgt ttcggtgacg 1621 actgggaact ggagggcaat gcggcgccgc cactgctcct catcctcggc tacggcctgg 1681 gcgtccaggt gtgggccatc ccagcgaatg gcgaagcggt tgaggtgcta tcctggcgtc 1741 acggcgtcgt cactgccctc cgggtgctgc ccacgccggc cacggccgcc gctctggacg 1801 agaatggccg ggcggacgag ccggtggatg cctttgccga gaagcgtccc ctggtggcgt 1861 tcgtcgatgg aggcagtgca gcggcgagtg gtttactttc cggcaatcca ggattgggtt 1921 tgggcggagg cggcggtggc ggtggaatcc ccacagttgg cggatccgtt ggaggagctg 1981 gcgtttcggc tgccgcccaa ttcagtgccg tgaacttcat gtccctcaaa acgggcgtcc 2041 aggtgaagac gatcaagttc aagaacgccg tgctggacat tcaggccaat cgatcggcgg 2101 tggtcatcac gttccacgaa cggatcgccg tcttcgatgc gcgaacgctg gaggaccgcc 2161 tcaccatcac cacctgctat cccagtccgg ggatcaatcc caatcccatt gctttgggac 2221 cgcgctggct ggcctatgcg gagcacaagt tgctgcactc caagcgcagc ggcggcggct 2281 gcgatggcga gggcgttccc agctacacgg ccaccgtgct caatgcggcc aaatctttgg 2341 gcaagggtct gcgggagctg ggcgagcagg tggccgccgg actgacgggc accaccgccg 2401 gcagcgccgg cagctccaag agcagcagct tcgactcggc cagcggcggt ccggatgcca 2461 agcaatcggg tgtggtcacc attatcgatg tgaagcatcc tgttaaggac tacagtccca 2521 cgtcgggcac tccgctgagc tccacgggcg gctcgcaggg cggcggcgat cccatcgttg 2581 cccactttgt ggcccacagc gaggctctgg tggccctgga gtttgacagc tccggcatgc 2641 tgctcctgac cgccgatcgg cggggccacg acttccatgt gttccgcatt cagccgcatc 2701 ccgttggccc cagcctggcc gccgtccacc atctgtacgt gctgcatcgc ggcgatacga 2761 gcgccaaggt gcagcacatc gccttctcgc tggactcgcg ctgggctgcc gtgtccacgc 2821 tgcgcggcac cacccacgtc ttccccatca cgccctacgg cggcgccatg ggcgttcgca 2881 cgcacacctc gctgcatgtg gtcaacaagc tgtcgcgctt ccatcgcagt gccggtttgg 2941 gcgccgacgg gcgctccagt tcgcccattt cgcactcgga gagcacgacg tttgtgcagt 3001 cgctgcagcc gtatcacaat cccaccctgc cgccgtatcc gcggccgtcg gtggtgcagc 3061 cactggccca gctgcgtcag cccttcacgc tcggctcgcc gccaggatcg gcgggcctgg 3121 gcggtggtgg tggcgtgggc ggcggcggtg gcatgagcag cggagtgagt tccgttggcc 3181 acggaggcgt tggcgtgggc agcagcagcc aaaggcagcg acagcggctc tcctcgctgt 3241 ccgatgacag cgggaaacca ctgagcgtct gctccatttt cgccaaatcg cgctcctggc 3301 tgctggagcc accgatggcg acacgagagc agccgcatcg cgtccagcgc aaggcggtgg 3361 actcgctctt cgtgatggcc ggacacgggg cgctcatcca gtacgatctg gacacaaagc 3421 tagcctcaca tgttgccaaa gagaagattt gtgatgacac gcccatcgag ctggaggtgg 3481 aggcccgcgc ccagtggaat ctggggcggc gcaaggatgg atctcaagaa atcgcaccac 3541 cgctgacgct ggacaactgg ctgatcaagg atcgccatgg cagcctgctg caggacagca 3601 cccatcattt cgacgagccg gacgagcggg ccgagagctg gctggcgcag gtggagatca 3661 tcacgcacgc gggtccgcac cgccggctgt ggatgggtcc gcagtttgtc ttcaagaact 3721 acaatacgcc cagcggttca aatctgaacc atgtcgatgc agaggcggtg gagattggcg 3781 tcaccaagac gacgaccacc acgctgccct cgacggcagc cgcttcgtcg gttttgggag 3841 gcggcaagga tcgctccagt ccgctgaaca tgccgctgaa tgcagccact tcggtgggag 3901 gatcgggcat cggcagctca gcggtgacgg gacgcagcgg tgccggagta ccggttctaa 3961 tcgaatccgg atcatacagc agcattgagc agagtcccaa gttaatggat cgcttccggc 4021 atggtcacct ggattcggac tacggccatg gcgacactcg tcttaaggag gatctggcgg 4081 atgccatgcg agagtcccca tccacggcgg cggcgcgacg tgagacttcg gctgcctccg 4141 cagatcccgc agctccgcct ccgtgtggcg atcagcacca cctggccacc ggttcctcgc 4201 catcgccagc ggatctcctg gccgccggcg gcggcggaag ttcgtcctcg aattgtgata 4261 atgcctgcta ttacgatgcc ctcgccgagc acgagagtct caacgatctg gacgaggtgg 4321 ccgaggatca tcatccggat acggatacgc atttgcactc gatggattcc atcaacgccc 4381 tggcctccgt tctgcccaac atctgcagct attcgcgcgt ggagaagatg gtcaatccgc 4441 tgggcaccgt aacggatcta aatgcgggaa tctccggtga actacagacg gatatgctgg 4501 acgaggtggt gggccaactg gcggccgagg agacggtgat ccatgagaat tgcgacgagg 4561 ctctcttccg gccggtggtg gccatctttt gcagtgatcc cgtcgagcgg cagaagctcc 4621 tgcagaaaaa ggatccccag acggacgagg ctatggctgc ggaattggaa ctgcagcagg 4681 ccagttgcca accgcctgtg gtgctggtta acaagctgat tgtaccggtg attgccaagg 4741 aggtggacga ggtgctcgtc cagaaggaga agcaaaagtc gcagaagtcg caaaaggcgc 4801 aacagcagca gcaacagaag aacctacgat ccttggcagc tgccgaggat gcggcgcagg 4861 cgcagagatt cgcggagctt tcgcatctca acaagccgaa aagtaacacc aataacaaca 4921 ataaaactgc cagccagaag agtggtagtg gcacctccga ggatgaggcc accaatgcca 4981 cgatcgcaaa atcagcgaag aaggccaaga gtaacaagca aaagaccaga aagccagagc 5041 aggagaagat cgtaaaggag aaggaggagg ttatgaagga ggtggaaatc caagaggagg 5101 agcagctctc cgaagcggaa tccgatcatg cagacagtct gttggccaac aagagcagca 5161 ttgcggccgt tatggtgagc agtgccagtg cccagggatt gagtctgcat gtggagatga 5221 gtgcgccgga tgcccaggat gaggatgagg aggaagagga agagaaagag gagcgggata 5281 ccgaggagga gcctccaaag gcggccaaaa agaagcaaca gccaggagga gcagtagcca 5341 ccatgacaat cgacaaggaa aaggagaaga ccaaggaaaa ggagctaaag ctaaaggaga 5401 aagagaagga gaaggagaaa gagaaagaaa gggaagcaaa gctcaaggag aaagaaaaag 5461 aagaaaggct gaagctcaag gaaagagaag aaagagaaaa gaaagaaaga gaacgggaag 5521 aaaatctaaa ggaggaaaag atcaaggaga aacaaaggga agaaaagctg aaggaggaga 5581 aggaaaggga agaaaggatc aaagaaaagg aaaggcaaga aaaaatcaag gaaaaggaaa 5641 gagaagaaag aatcaaggaa aaagagcgcg aagagaagct taaggagaag cagcgtgaag 5701 aaaagctcaa ggaagaaaag atcaaggaga aggaacggga agaaaaatta aaggaaaagg 5761 aaagagctga aaagatcaag gagaaggaac gggaagagaa actcaaggag aaggaaaggg 5821 aagaaaagat caagaaagaa agggaagaga gacagaagga aaaggagaga gaagagaagc 5881 tcaaggagaa agaaaggcaa gagaagctca gagagaaaga gcgtgaagag aagctcaaga 5941 aggaaatgga agagaagcaa aaggaaaggg aaagagagga gaagctcaag gagaaagaga 6001 aagccgagaa gctcaaggag cttgaaagag aggccaagct taaggagaag gaaagagagg 6061 ccaagctcaa ggagaaggcg gagaaagaga aagtgaagga gaaggaaaag accctcgaat 6121 cccccctccc ggcagcggtg accagtccct ggagaagagt agccgacgaa actccaacca 6181 agctgcccgc cgttcaggat taccccagcc tgggcaagaa gcccgccaag gcgagtcccg 6241 aaaagaagcg ggatgagaag ctgctgccgg gtctcaccac tcccccgaag gaggaggtca 6301 aggacacctt cgaggacttc ctgagcggcc tgaagccact ggaggccctg ccaccgcttc 6361 cagctctcga acccctcgag gtcaaggacg attcgaagaa ggaaaccttg agcctgatca 6421 atttcgagag tccgctgcag gagaagtcgg cgatcccgcg aaatatatcc ccaccaccgc 6481 gcggcttcac cgaacaaaat ctgatcctgg ccctctgcgg ttccctgcac tacgaaaacg 6541 aacaggagcg cgtaagggaa gcagatctgg aggtggtagc cacaccagaa ccggcgtaca 6601 ttaccctgga tacgctgtcc ctgcagaagt ccacctccac atcgaataac tcctcgggtt 6661 ccgaggagat tgtcatcatg gaggagcccg tcaagaagct gagcaagaag cacaagcgac 6721 tgaagcaact ccagttgcag cagcagcaaa gggagcggga aagggagccc gacgacgagg 6781 agctgcgtcc tctgatcagc atcagcatgt gcgattcgca gctggaacag cctgccaggt 6841 cagctgccga cgaggatgag gcaggcgatg ttgaggagac ggagcccgaa cccgaacccc 6901 aacctgaatc actgcccgag gatctgctgc actttggcag cagtggcgtg gccaccaatg 6961 ccaccagcga ggacagcgaa ggacccgtgc ccgccaccac atccgatgac aacgtggtct 7021 acggcaatgc cgccgccgca ccgccgcaca agctcaagac caagaagctg gagcacaaga 7081 tcaatctgat agcggccatc gaggcggcca cctcctcgtc cacgtcctcg gcggaggaga 7141 gcagtgtgga gacgacggtt catccggcgg attcgacggg tctgggtttg ggtttgcaat 7201 cccattcgcc cggcggagga actagttctg gtaacctgac cacgggtgct gctgctgcca 7261 cgactgctgc tctaaatgct gccggcggcg gcggaggagg cgttacctcc gtgggcgtgg 7321 ccagcccgcc gagtgccaca aagaagaaga cgaagcgacg caagagataa gaattagcga 7381 tttgtttgct gtgtgtcttt agcctggtgg tgctgtggca tctgtacgcc aatcggcagg 7441 acggagcacc cactgcccat gcgctccagc agcagcagca gcagccggag gatcatggag 7501 tatcggagca gccaggacaa cctgctgaca gccagaacaa tcgcatcctg aagcaggagg 7561 aagctgatca gaaggtgaag taggacagca gcaaacgagc aacagcaatt cgaaatccat 7621 ggacaaccaa tggaaaacaa ccacgacaga agatgactct agattcttaa tttttagctg 7681 tgtgcaagaa gtaaatcatt tcagtaacca accacaaacc acaaaaacca acaaaaaaaa 7741 aaacaacaaa acaaaaaaca aaactctgca aaaaaaattg tgatttatcg aaaagaaaaa 7801 caaaaagtta gttataatgc attaatttaa agcgaaaaaa caaacaaaaa caaaaacaaa 7861 acgactgtag ctgttcgttt agacaaaaaa catacatata aacaaatgaa aggaaaagcg 7921 acaaaaaata tttaaatact aaccgatttt taagtgcaaa gttatattgt tagctataca 7981 tttctagaaa atatgaatac aacagaacct atatataaac gacacccatt tatatatata 8041 tatatatatt acaatatata aatatttgaa agaaagtggc ctaaacgtaa gcacacagat 8101 aatgtatcaa ctaatgctct caaattgtac ataaaaggcg cccgaaaatt cgctcagtgc 8161 ggaaatcgaa atttgtaaaa ttgaaatcct gccccctagc ttacacacaa acacacacat 8221 atgcagctaa agcttgcagg acacacagtt ggaagttaat ggttaaataa atacgcaacc 8281 ccaattttat ccatagaa